Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 1.6e-161 572.8 298 100.0
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 6.0e-137 491.1 298 89.6
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 2.6e-100 369.4 291 68.0
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 1.5e-95 353.6 262 71.4
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 9.6e-95 350.9 289 62.6
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 3.2e-90 335.9 297 60.9
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 1.3e-88 330.5 254 66.5
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 5.1e-88 328.6 295 60.3
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.1e-88 328.6 273 62.3
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 3.3e-87 325.9 299 58.5
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 3.3e-87 325.9 271 62.0
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 5.7e-87 325.1 291 59.5
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 1.6e-86 323.6 282 60.3
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 4.8e-86 322.0 262 64.1
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 6.3e-86 321.6 301 58.8
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 6.3e-86 321.6 299 58.9
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 1.1e-85 320.9 283 58.7
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 3.1e-85 319.3 291 58.8
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 3.4e-84 315.8 274 57.7
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 4.5e-84 315.5 295 58.6
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 5.9e-84 315.1 257 63.0
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 7.6e-84 314.7 303 56.4
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.0e-83 314.3 276 60.5
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 1.0e-83 314.3 287 59.9
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 1.4e-82 310.5 286 57.3
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.5e-82 309.7 282 57.1
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 2.5e-82 309.7 282 57.1
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 4.2e-82 308.9 284 58.5
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 4.2e-82 308.9 248 66.1
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 4.2e-82 308.9 285 61.8
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 4.2e-82 308.9 279 59.9
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 4.2e-82 308.9 300 55.3
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 7.2e-82 308.1 214 73.4
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.1e-81 306.6 281 55.9
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 6.1e-81 305.1 283 57.6
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 6.1e-81 305.1 247 64.0
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 1.8e-80 303.5 305 51.8
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 2.3e-80 303.1 279 57.7
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 1.5e-79 300.4 287 55.7
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 2.5e-79 299.7 283 56.5
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 7.4e-79 298.1 284 56.0
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 9.7e-79 297.7 269 57.6
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 1.3e-78 297.4 284 56.3
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 3.7e-78 295.8 294 54.8
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 6.3e-78 295.0 284 56.3
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 6.3e-78 295.0 272 57.0
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 8.2e-78 294.7 296 59.1
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.1e-77 294.3 253 64.4
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 1.8e-77 293.5 236 61.4
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 2.4e-77 293.1 295 53.2
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 3.1e-77 292.7 289 54.3
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 2.0e-76 290.0 285 55.1
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 2.0e-76 290.0 311 51.8
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 3.4e-76 289.3 287 53.7
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 1.7e-75 287.0 270 55.6
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 1.7e-75 287.0 276 54.7
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 3.8e-75 285.8 273 57.5
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 5.0e-75 285.4 229 63.8
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 8.5e-75 284.6 308 51.6
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 8.5e-75 284.6 295 51.9
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 8.5e-75 284.6 313 52.1
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 7.2e-74 281.6 262 57.3
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 1.2e-73 280.8 270 53.3
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 3.6e-73 279.3 262 56.5
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.9e-73 278.1 211 66.8
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 1.4e-72 277.3 240 62.5
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 3.0e-72 276.2 239 59.0
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 6.7e-72 275.0 232 62.1
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 6.7e-72 275.0 281 52.3
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 2.6e-71 273.1 272 55.1
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 7.7e-68 261.5 308 50.0
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 1.7e-67 260.4 254 56.7
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 6.5e-67 258.5 234 55.1
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 2.5e-66 256.5 301 47.5
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 3.2e-66 256.1 259 54.8
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 1.1e-63 247.7 278 50.4
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 1.1e-63 247.7 294 48.6
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 2.6e-63 246.5 257 54.5
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.4e-63 245.0 270 51.9
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.4e-63 245.0 270 51.9
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 9.7e-63 244.6 252 53.2
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 4.1e-61 239.2 219 58.9
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 3.5e-60 236.1 247 52.2
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 3.5e-60 236.1 204 59.8
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 1.7e-59 233.8 182 64.8
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 2.2e-59 233.4 259 48.3
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 1.1e-58 231.1 246 53.3
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 2.5e-58 229.9 240 52.1
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 5.5e-58 228.8 270 45.2
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 2.0e-55 220.3 393 37.7
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 4.4e-55 219.2 239 48.5
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 1.8e-53 213.8 178 61.2
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 9.1e-53 211.5 175 60.0
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 7.7e-52 208.4 217 55.3
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 4.2e-50 202.6 204 55.4
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 2.1e-41 173.7 258 42.6
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 6.1e-41 172.2 156 56.4
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 8.0e-41 171.8 122 68.0
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 4.0e-40 169.5 238 42.4
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 4.0e-40 169.5 143 58.0
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 3.4e-39 166.4 257 43.6
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 4.4e-39 166.0 162 54.3
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 4.9e-38 162.5 134 61.9
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 6.3e-38 162.2 143 58.7
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 5.4e-37 159.1 115 66.1
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 1.2e-33 147.9 136 57.4
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 6.1e-33 145.6 139 57.6
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 1.2e-31 141.4 109 66.1
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 1.5e-31 141.0 143 52.4
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 1.5e-31 141.0 143 52.4
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 4.4e-31 139.4 151 50.3
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 7.5e-31 138.7 161 50.9
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 2.2e-30 137.1 143 51.7
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 8.3e-30 135.2 128 53.9
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 1.8e-29 134.0 111 62.2
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 9.2e-29 131.7 120 55.8
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 7.8e-28 128.6 237 37.6
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 6.6e-27 125.6 62 90.3
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.5e-26 123.6 72 75.0
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 3.4e-23 113.2 322 26.7
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 1.3e-19 101.3 56 78.6
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-18 97.8 103 48.5
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 8.1e-17 92.0 80 62.5
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 8.1e-17 92.0 233 30.0
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 5.2e-16 89.4 120 48.3
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.2e-15 88.2 65 56.9
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 7.5e-15 85.5 129 42.6
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 4.1e-13 79.7 82 53.7
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 1.2e-12 78.2 126 38.1
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 6.6e-11 72.4 106 40.6
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 5.6e-10 69.3 45 68.9
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 3.1e-08 63.5 73 45.2
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 7.6e-07 58.9 33 75.8


User provided reference genes

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