Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p029589 Quercus lobata HOM05D005681 ORTHO05D007274 1.1e-164 583.2 292 100.0
CiPaw.08G024200 Carya illinoinensis HOM05D005681 ORTHO05D007274 3.1e-130 468.8 293 79.2
Dinv30262 Davidia involucrata HOM05D005681 ORTHO05D007274 1.1e-124 450.3 291 75.3
Gorai.010G110300 Gossypium raimondii HOM05D005681 ORTHO05D007274 1.1e-124 450.3 293 75.1
Gohir.A06G095700 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.3e-123 446.8 293 74.7
Lj1g0012145 Lotus japonicus HOM05D005681 ORTHO05D007274 1.3e-123 446.8 293 74.1
Ca_15613_v3 Cicer arietinum L. HOM05D005681 ORTHO05D007274 4.8e-123 444.9 291 73.2
ClCG08G012350 Citrullus lanatus HOM05D005681 ORTHO05D007274 1.1e-122 443.7 291 74.9
Duzib150G0332 Durio zibethinus HOM05D005681 ORTHO05D007274 5.3e-122 441.4 293 75.4
Atru.chr7.2148 Acer truncatum HOM05D005681 ORTHO05D007274 1.0e-120 437.2 292 74.7
GSVIVG01035659001 Vitis vinifera HOM05D005681 ORTHO05D007274 1.0e-120 437.2 290 74.1
Gorai.009G051200 Gossypium raimondii HOM05D005681 ORTHO05D007274 1.3e-120 436.8 293 73.0
TWI32G1178 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 1.3e-120 436.8 292 74.3
Psat0s2259g0040 Pisum sativum HOM05D005681 ORTHO05D007274 1.7e-120 436.4 291 72.2
Hma1.2p1_0140F.1_g063453 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 2.2e-120 436.0 291 71.8
Hma1.2p1_0140F.1_g063456 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 2.2e-120 436.0 291 71.8
Glyma.04G080900 Glycine max HOM05D005681 ORTHO05D007274 5.0e-120 434.9 291 72.2
Gohir.D05G049900 Gossypium hirsutum HOM05D005681 ORTHO05D007274 5.0e-120 434.9 293 73.0
Dinv14236 Davidia involucrata HOM05D005681 ORTHO05D007274 6.5e-120 434.5 292 72.9
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 8.5e-120 434.1 277 77.6
MELO3C011155.2 Cucumis melo HOM05D005681 ORTHO05D007274 8.5e-120 434.1 290 74.1
Manes.03G061300 Manihot esculenta HOM05D005681 ORTHO05D007274 8.5e-120 434.1 292 72.3
Medtr3g110075 Medicago truncatula HOM05D005681 ORTHO05D007274 1.4e-119 433.3 290 71.4
Actinidia13315 Actinidia chinensis HOM05D005681 ORTHO05D007274 2.5e-119 432.6 292 74.7
Cc08_g09110 Coffea canephora HOM05D005681 ORTHO05D007274 3.2e-119 432.2 301 71.1
Gohir.A05G047800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 3.2e-119 432.2 293 72.0
Nitab4.5_0000052g0240 Nicotiana tabacum HOM05D005681 ORTHO05D007274 4.2e-119 431.8 304 70.4
Actinidia31229 Actinidia chinensis HOM05D005681 ORTHO05D007274 7.2e-119 431.0 292 72.9
Ciclev10009066m.g Citrus clementina HOM05D005681 ORTHO05D007274 7.2e-119 431.0 293 72.4
TPR.G1346 Trifolium pratense HOM05D005681 ORTHO05D007274 9.4e-119 430.6 293 72.0
Peaxi162Scf00523g00017 Petunia axillaris HOM05D005681 ORTHO05D007274 2.1e-118 429.5 300 69.7
TAR626G1886 Trochodendron aralioides HOM05D005681 ORTHO05D007274 2.1e-118 429.5 291 72.2
Glyma.06G082600 Glycine max HOM05D005681 ORTHO05D007274 6.1e-118 427.9 291 71.1
Nitab4.5_0011506g0010 Nicotiana tabacum HOM05D005681 ORTHO05D007274 3.0e-117 425.6 304 69.4
VMungo1309G2636 Vigna mungo HOM05D005681 ORTHO05D007274 3.9e-117 425.2 293 71.0
SalBow4G0279 Salvia bowleyana HOM05D005681 ORTHO05D007274 5.1e-117 424.9 299 70.6
Lalb_Chr08g0243221 Lupinus albus HOM05D005681 ORTHO05D007274 6.7e-117 424.5 295 70.5
Solyc08g068350.3 Solanum lycopersicum HOM05D005681 ORTHO05D007274 8.8e-117 424.1 305 69.5
Thecc.09G041100 Theobroma cacao HOM05D005681 ORTHO05D007274 8.8e-117 424.1 293 72.4
CSS0039623 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 2.0e-116 422.9 294 71.1
Haze_21866 Corylus avellana HOM05D005681 ORTHO05D007274 2.0e-116 422.9 369 61.0
Sopen08g022200 Solanum pennellii HOM05D005681 ORTHO05D007274 5.7e-116 421.4 308 68.5
arahy.Tifrunner.gnm1.ann1.M4G12U Arachis hypogaea HOM05D005681 ORTHO05D007274 9.7e-116 420.6 292 69.9
arahy.Tifrunner.gnm1.ann1.Z4VD8H Arachis hypogaea HOM05D005681 ORTHO05D007274 1.3e-115 420.2 292 69.9
TWI34G0866 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 2.2e-115 419.5 280 72.5
PGR044G0773 Punica granatum HOM05D005681 ORTHO05D007274 3.7e-115 418.7 291 71.1
Potri.006G241200 Populus trichocarpa HOM05D005681 ORTHO05D007274 6.3e-115 417.9 291 71.1
THA.LOC104803765 Tarenaya hassleriana HOM05D005681 ORTHO05D007274 6.3e-115 417.9 293 71.7
MD15G1096600 Malus domestica HOM05D005681 ORTHO05D007274 8.2e-115 417.5 276 74.6
Prupe.1G451500 Prunus persica HOM05D005681 ORTHO05D007274 8.2e-115 417.5 276 75.0
CAN.G21.34 Capsicum annuum HOM05D005681 ORTHO05D007274 1.4e-114 416.8 308 67.2
PGSC0003DMG400010842 Solanum tuberosum HOM05D005681 ORTHO05D007274 1.4e-114 416.8 308 68.2
EL10Ac2g04057 Beta vulgaris HOM05D005681 ORTHO05D007274 6.9e-114 414.5 296 68.2
SGA_v2.0_scaffold243G44291 Striga asiatica HOM05D005681 ORTHO05D007274 1.5e-113 413.3 309 68.0
Sed0026422 Sechium edule HOM05D005681 ORTHO05D007274 2.6e-113 412.5 291 70.1
Sc23g0005990 Simmondsia chinensis HOM05D005681 ORTHO05D007274 2.6e-113 412.5 284 69.0
Phvul.009G107000 Phaseolus vulgaris HOM05D005681 ORTHO05D007274 5.9e-113 411.4 291 69.1
AUR62009315 Chenopodium quinoa HOM05D005681 ORTHO05D007274 7.7e-113 411.0 291 68.7
COL.COLO4_18685 Corchorus olitorius HOM05D005681 ORTHO05D007274 7.7e-113 411.0 315 66.7
Eucgr.C02898 Eucalyptus grandis HOM05D005681 ORTHO05D007274 2.2e-112 409.5 293 71.7
Sed0017759 Sechium edule HOM05D005681 ORTHO05D007274 2.9e-112 409.1 290 70.0
Nn3g18081 Nelumbo nucifera HOM05D005681 ORTHO05D007274 6.5e-112 407.9 278 71.9
AT4G32750 Arabidopsis thaliana HOM05D005681 ORTHO05D007274 1.1e-111 407.1 294 70.4
Carub.0007s0774 Capsella rubella HOM05D005681 ORTHO05D007274 4.2e-111 405.2 293 69.6
CARHR240740 Cardamine hirsuta HOM05D005681 ORTHO05D007274 4.2e-111 405.2 293 70.3
MSTRG.25900 Avicennia marina HOM05D005681 ORTHO05D007274 5.5e-111 404.8 298 69.8
Lsat_1_v5_gn_5_33341 Lactuca sativa HOM05D005681 ORTHO05D007274 7.2e-111 404.4 300 67.0
AL7G19000 Arabidopsis lyrata HOM05D005681 ORTHO05D007274 9.4e-111 404.1 293 70.3
Sabra18G0039000 Salix brachista HOM05D005681 ORTHO05D007274 2.1e-110 402.9 291 68.7
Sp7g30510 Schrenkiella parvula HOM05D005681 ORTHO05D007274 4.7e-110 401.7 293 69.3
Potri.018G038600 Populus trichocarpa HOM05D005681 ORTHO05D007274 1.4e-109 400.2 291 68.4
BcaB03g12761 Brassica carinata HOM05D005681 ORTHO05D007274 1.8e-109 399.8 294 69.7
Rhsim07G0152800 Rhododendron simsii HOM05D005681 ORTHO05D007274 1.8e-109 399.8 291 70.1
Hund03415 Selenicereus undatus HOM05D005681 ORTHO05D007274 3.0e-109 399.1 291 66.7
PSO566G0344 Papaver somniferum HOM05D005681 ORTHO05D007274 3.9e-109 398.7 294 69.4
MBI01_g15703_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 5.2e-109 398.3 294 70.1
PSO782G3698 Papaver somniferum HOM05D005681 ORTHO05D007274 5.2e-109 398.3 293 68.3
Thhalv10025880m.g Eutrema salsugineum HOM05D005681 ORTHO05D007274 8.8e-109 397.5 294 68.4
Sabra06G0188600 Salix brachista HOM05D005681 ORTHO05D007274 8.8e-109 397.5 291 67.7
RcHm_v2.0_Chr6g0305881 Rosa chinensis HOM05D005681 ORTHO05D007274 1.1e-108 397.1 280 70.0
A08p17930 Brassica napus HOM05D005681 ORTHO05D007274 3.3e-108 395.6 295 69.5
BraA08t33745Z Brassica rapa HOM05D005681 ORTHO05D007274 3.3e-108 395.6 295 69.5
Ah.10g035130 Amaranthus hybridus HOM05D005681 ORTHO05D007274 5.7e-108 394.8 294 67.0
Aa31LG2G17210 Aethionema arabicum HOM05D005681 ORTHO05D007274 9.7e-108 394.0 292 68.5
BolC3t21001H Brassica oleracea HOM05D005681 ORTHO05D007274 6.3e-107 391.3 295 68.8
C03p87050 Brassica napus HOM05D005681 ORTHO05D007274 1.4e-106 390.2 295 68.8
Cpa.g.sc78.73 Carica papaya HOM05D005681 ORTHO05D007274 3.1e-106 389.0 446 49.8
Migut.A00229 Erythranthe guttata HOM05D005681 ORTHO05D007274 3.1e-106 389.0 300 66.0
FvH4_2g35990 Fragaria vesca HOM05D005681 ORTHO05D007274 9.1e-106 387.5 278 70.1
FAN20G2636 Fragaria x ananassa HOM05D005681 ORTHO05D007274 2.0e-105 386.3 278 70.5
Aqoxy7G01593 Aquilegia oxysepala HOM05D005681 ORTHO05D007274 5.0e-104 381.7 291 64.3
ATR0315G043 Amborella trichopoda HOM05D005681 ORTHO05D007274 5.5e-103 378.3 274 68.2
vmacro05364 Vaccinium macrocarpon HOM05D005681 ORTHO05D007274 2.1e-102 376.3 276 68.8
CSS0012406 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 1.0e-101 374.0 283 68.2
Lj7A706G35 Lonicera japonica HOM05D005681 ORTHO05D007274 2.3e-101 372.9 297 64.0
CANSAT80G1365 Cannabis sativa HOM05D005681 ORTHO05D007274 5.7e-100 368.2 290 64.1
MD08G1117000 Malus domestica HOM05D005681 ORTHO05D007274 1.7e-99 366.7 272 68.8
Nn2g11688 Nelumbo nucifera HOM05D005681 ORTHO05D007274 2.8e-99 365.9 252 74.2
HanXRQChr08g0236281 Helianthus annuus HOM05D005681 ORTHO05D007274 1.7e-96 356.7 291 63.9
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.4e-93 347.1 254 68.5
HPP92_006301 Vanilla planifolia HOM05D005681 ORTHO05D007274 2.0e-92 343.2 282 60.6
HPP92_006306 Vanilla planifolia HOM05D005681 ORTHO05D007274 3.4e-92 342.4 282 61.0
ECA246G0085 Erigeron canadensis HOM05D005681 ORTHO05D007274 9.1e-90 334.3 257 66.9
BcaC09g52069 Brassica carinata HOM05D005681 ORTHO05D007274 2.7e-89 332.8 285 63.5
A01p05570 Brassica napus HOM05D005681 ORTHO05D007274 7.7e-89 331.3 292 62.3
CsaV3_2G031020 Cucumis sativus L. HOM05D005681 ORTHO05D007274 1.4e-85 320.5 210 75.7
Gohir.D06G095800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.8e-82 310.1 204 73.0
BolC7t46377H Brassica oleracea HOM05D005681 ORTHO05D007274 1.2e-81 307.4 209 72.7
Os02g0272400 Oryza sativa ssp. japonica HOM05D005681 ORTHO05D007274 2.9e-80 302.8 284 56.0
Dinv30480 Davidia involucrata HOM05D005681 ORTHO05D007274 2.8e-78 296.2 258 58.9
AUR62043614 Chenopodium quinoa HOM05D005681 ORTHO05D007274 8.0e-78 294.7 291 53.6
Zm00001eb203450 Zea mays HOM05D005681 ORTHO05D007274 2.0e-76 290.0 286 53.8
AUR62029668 Chenopodium quinoa HOM05D005681 ORTHO05D007274 2.6e-76 289.7 291 53.3
Duzib168G1957 Durio zibethinus HOM05D005681 ORTHO05D007274 1.7e-75 287.0 274 56.6
AagrBONN_evm.TU.Sc2ySwM_362.2150 Anthoceros agrestis HOM05D005681 ORTHO05D007274 3.0e-72 276.2 273 50.2
CDE04G0437 Ceratophyllum demersum HOM05D005681 ORTHO05D007274 8.0e-70 268.1 272 51.5
DCAR_000748 Daucus carota HOM05D005681 ORTHO05D007274 1.1e-66 257.7 164 75.6
Oeu008286.1 Olea europaea HOM05D005681 ORTHO05D007274 1.6e-65 253.8 165 73.3
Lsat_1_v5_gn_1_49740 Lactuca sativa HOM05D005681 ORTHO05D007274 3.5e-65 252.7 277 47.7
BcaNung03601 Brassica carinata HOM05D005681 ORTHO05D007274 1.0e-64 251.1 253 57.7
Mapoly0093s0011 Marchantia polymorpha HOM05D005681 ORTHO05D007274 5.0e-64 248.8 276 47.1
Pp3c7_12500 Physcomitrium patens HOM05D005681 ORTHO05D007274 1.1e-63 247.7 270 49.6
Oeu008289.1 Olea europaea HOM05D005681 ORTHO05D007274 2.1e-62 243.4 165 70.9
SMO347G0207 Selaginella moellendorffii HOM05D005681 ORTHO05D007274 1.4e-58 230.7 304 45.1
Pp3c2_21260 Physcomitrium patens HOM05D005681 ORTHO05D007274 2.7e-57 226.5 275 48.0
BraA01t00528Z Brassica rapa HOM05D005681 ORTHO05D007274 1.1e-55 221.1 168 70.2
C07p59310 Brassica napus HOM05D005681 ORTHO05D007274 2.0e-52 210.3 285 48.1
BcaNung04523 Brassica carinata HOM05D005681 ORTHO05D007274 1.9e-50 203.8 244 51.2
AUR62043618 Chenopodium quinoa HOM05D005681 ORTHO05D007274 8.1e-38 161.8 117 66.7
MBI01_g30752_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 1.5e-36 157.5 141 59.6
Oeu012191.1 Olea europaea HOM05D005681 ORTHO05D007274 3.8e-35 152.9 134 56.7
ATR0051G031 Amborella trichopoda HOM05D005681 ORTHO05D007274 1.8e-21 107.5 96 57.3
Oeu031829.2 Olea europaea HOM05D005681 ORTHO05D007274 2.0e-20 104.0 130 46.9
A03p61560 Brassica napus HOM05D005681 ORTHO05D040333 1.2e-12 78.2 240 33.8
BraA03t15198Z Brassica rapa HOM05D005681 ORTHO05D040333 1.1e-07 61.6 178 35.4
ATR0326G034 Amborella trichopoda HOM05D005681 ORTHO05D068436 2.8e-06 57.0 77 39.0


User provided reference genes

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