Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p028983 Quercus lobata HOM05D008757 ORTHO05D010583 8.4e-205 716.8 377 100.0
Cfa005830 Carpinus fangiana HOM05D008757 ORTHO05D010583 7.6e-105 384.8 365 59.5
Haze_05014 Corylus avellana HOM05D008757 ORTHO05D010583 1.5e-89 334.0 428 49.5
Potri.002G198200 Populus trichocarpa HOM05D008757 ORTHO05D010583 6.7e-61 238.8 400 41.2
TAR365G0134 Trochodendron aralioides HOM05D008757 ORTHO05D010583 1.5e-60 237.7 386 42.2
Sabra02G0159400 Salix brachista HOM05D008757 ORTHO05D010583 3.3e-60 236.5 412 40.0
Rhsim01G0289500 Rhododendron simsii HOM05D008757 ORTHO05D010583 1.3e-59 234.6 344 43.0
CSS0028194 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 1.7e-59 234.2 367 43.9
Actinidia25837 Actinidia chinensis HOM05D008757 ORTHO05D010583 1.1e-58 231.5 369 42.8
CSS0009821 Camellia sinensis var. sinensis HOM05D008757 ORTHO05D010583 1.1e-58 231.5 323 45.8
TWI18G1222 Tripterygium wilfordii HOM05D008757 ORTHO05D010583 1.7e-56 224.2 322 42.5
Gohir.D11G115900 Gossypium hirsutum HOM05D008757 ORTHO05D010583 3.0e-53 213.4 363 40.2
Gohir.A11G110800 Gossypium hirsutum HOM05D008757 ORTHO05D010583 5.2e-53 212.6 350 40.6
COL.COLO4_23259 Corchorus olitorius HOM05D002981 ORTHO05D003725 1.2e-49 201.4 285 43.5
DCAR_012364 Daucus carota HOM05D008757 ORTHO05D010583 2.2e-48 197.2 352 37.8
Lj1A19T23 Lonicera japonica HOM05D008757 ORTHO05D010583 2.1e-46 190.7 347 39.5
Gorai.007G124100 Gossypium raimondii HOM05D008757 ORTHO05D010583 1.0e-45 188.3 322 40.1
Peaxi162Scf00001g00251 Petunia axillaris HOM05D008757 ORTHO05D010583 5.2e-45 186.0 376 37.0
Nitab4.5_0000116g0030 Nicotiana tabacum HOM05D008757 ORTHO05D010583 6.8e-45 185.7 337 40.9
Nitab4.5_0000906g0100 Nicotiana tabacum HOM05D008757 ORTHO05D010583 8.8e-45 185.3 391 38.1
vmacro15123 Vaccinium macrocarpon HOM05D008757 ORTHO05D010583 1.7e-43 181.0 228 48.2
Solyc01g079630.3 Solanum lycopersicum HOM05D008757 ORTHO05D010583 1.7e-40 171.0 374 35.8
Dinv10074 Davidia involucrata HOM05D008757 ORTHO05D010583 2.3e-40 170.6 368 33.7
Sopen01g031410 Solanum pennellii HOM05D008757 ORTHO05D010583 2.3e-40 170.6 366 36.6
MSTRG.18114 Avicennia marina HOM05D008757 ORTHO05D010583 5.6e-39 166.0 384 33.1
RcHm_v2.0_Chr7g0241871 Rosa chinensis HOM05D008757 ORTHO05D010583 3.6e-38 163.3 363 33.6
Aqoxy3G01114 Aquilegia oxysepala HOM05D008757 ORTHO05D010583 8.0e-38 162.2 323 34.4
Migut.D00097 Erythranthe guttata HOM05D008757 ORTHO05D010583 8.0e-38 162.2 330 35.2
Cc08_g11800 Coffea canephora HOM05D008757 ORTHO05D010583 7.5e-36 155.6 261 40.6
FAN18G1448 Fragaria x ananassa HOM05D008757 ORTHO05D010583 7.5e-36 155.6 350 34.0
ATR0706G029 Amborella trichopoda HOM05D008757 ORTHO05D010583 1.3e-35 154.8 308 36.0
SGA_v2.0_scaffold334G49056 Striga asiatica HOM05D008757 ORTHO05D010583 1.3e-35 154.8 356 34.0
FAN13G0940 Fragaria x ananassa HOM05D008757 ORTHO05D010583 1.7e-35 154.5 350 34.0
FAN08G1681 Fragaria x ananassa HOM05D008757 ORTHO05D010583 8.3e-35 152.1 350 33.4
GSVIVG01028089001 Vitis vinifera HOM05D008757 ORTHO05D010583 1.4e-34 151.4 385 34.5
FAN04G1474 Fragaria x ananassa HOM05D008757 ORTHO05D010583 3.2e-34 150.2 350 34.0
Hma1.2p1_1302F.1_g274300 Hydrangea macrophylla HOM05D008757 ORTHO05D010583 3.5e-33 146.7 168 48.2
Prupe.8G269900 Prunus persica HOM05D008757 ORTHO05D010583 3.9e-32 143.3 203 41.9
FvH4_5g39560 Fragaria vesca HOM05D008757 ORTHO05D010583 2.5e-31 140.6 350 32.0
MD11G1316900 Malus domestica HOM05D008757 ORTHO05D010583 1.4e-29 134.8 373 31.6
Thecc.01G310700 Theobroma cacao HOM05D008757 ORTHO05D010583 3.7e-19 100.1 109 51.4
SEGI_31757 Sequoiadendron giganteum HOM05D008757 ORTHO05D010583 7.8e-17 92.4 348 22.7
PGR119G0138 Punica granatum HOM05D008757 ORTHO05D010583 1.7e-16 91.3 313 31.0
CARHR172890 Cardamine hirsuta HOM05D012658 ORTHO05D010583 5.1e-16 89.7 398 29.4
THA.LOC104817467 Tarenaya hassleriana HOM05D012658 ORTHO05D010583 1.9e-15 87.8 136 39.0
AT3G62620 Arabidopsis thaliana HOM05D012658 ORTHO05D010583 4.3e-15 86.7 141 39.0
Carub.0005s2928 Capsella rubella HOM05D012658 ORTHO05D010583 6.8e-13 79.3 317 29.3
AL5G45370 Arabidopsis lyrata HOM05D012658 ORTHO05D010583 2.2e-11 74.3 331 27.5
Thhalv10006051m.g Eutrema salsugineum HOM05D012658 ORTHO05D010583 2.9e-11 73.9 144 34.0
BcaC07g40736 Brassica carinata HOM05D012658 ORTHO05D010583 4.9e-11 73.2 182 30.8
BraA09t40861Z Brassica rapa HOM05D012658 ORTHO05D010583 8.4e-11 72.4 151 33.1
BcaC07g40779 Brassica carinata HOM05D012658 ORTHO05D010583 1.1e-10 72.0 307 28.0
BolC8t51315H Brassica oleracea HOM05D012658 ORTHO05D010583 5.4e-10 69.7 132 32.6
A09p54480 Brassica napus HOM05D012658 ORTHO05D010583 1.2e-09 68.6 144 31.9
C08p37370 Brassica napus HOM05D012658 ORTHO05D010583 1.0e-08 65.5 132 31.8
AagrBONN_evm.TU.Sc2ySwM_369.432 Anthoceros agrestis HOM05D008307 ORTHO05D010374 1.1e-07 62.0 175 26.9
SEGI_00673 Sequoiadendron giganteum HOM05D008307 ORTHO05D010374 1.5e-07 61.6 218 24.8
A05p34600 Brassica napus HOM05D012658 ORTHO05D010583 1.9e-07 61.2 149 31.5
MD16G1220900 Malus domestica HOM05D008307 ORTHO05D010374 6.2e-06 56.2 140 29.3
ATR0736G143 Amborella trichopoda HOM05D008307 ORTHO05D010374 8.1e-06 55.8 197 27.4


User provided reference genes

Program Settings