Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p028448 Quercus lobata HOM05D007613 ORTHO05D009344 7.5e-68 260.4 130 100.0
CiPaw.07G109200 Carya illinoinensis HOM05D007613 ORTHO05D009344 1.3e-56 223.0 130 83.1
Eucgr.H01109 Eucalyptus grandis HOM05D007613 ORTHO05D009344 1.4e-53 213.0 130 79.2
Potri.014G128900 Populus trichocarpa HOM05D007613 ORTHO05D009344 4.0e-53 211.5 129 78.3
MELO3C016000.2 Cucumis melo HOM05D007613 ORTHO05D009344 4.9e-51 204.5 129 72.1
CsaV3_7G029280 Cucumis sativus L. HOM05D007613 ORTHO05D009344 1.1e-50 203.4 129 71.3
Manes.01G219200 Manihot esculenta HOM05D007613 ORTHO05D009344 1.1e-50 203.4 129 73.6
Ciclev10022836m.g Citrus clementina HOM05D007613 ORTHO05D009344 1.8e-50 202.6 130 73.8
TPR.G33996 Trifolium pratense HOM05D007613 ORTHO05D009344 2.4e-50 202.2 129 74.4
Psat6g165400 Pisum sativum HOM05D007613 ORTHO05D009344 5.4e-50 201.1 129 74.4
VMungo0720G1265 Vigna mungo HOM05D007613 ORTHO05D009344 4.5e-49 198.0 130 70.0
Lj5g0017580 Lotus japonicus HOM05D007613 ORTHO05D009344 5.9e-49 197.6 132 72.7
Duzib133G0913 Durio zibethinus HOM05D007613 ORTHO05D009344 1.3e-48 196.4 130 69.2
Phvul.007G146700 Phaseolus vulgaris HOM05D007613 ORTHO05D009344 1.3e-48 196.4 130 69.2
GSVIVG01028017001 Vitis vinifera HOM05D007613 ORTHO05D009344 3.3e-47 191.8 126 73.0
arahy.Tifrunner.gnm1.ann1.BW40YJ Arachis hypogaea HOM05D007613 ORTHO05D009344 7.3e-47 190.7 130 66.9
TAR636G2501 Trochodendron aralioides HOM05D007613 ORTHO05D009344 7.3e-47 190.7 129 69.0
Actinidia24821 Actinidia chinensis HOM05D007613 ORTHO05D009344 9.5e-47 190.3 130 70.8
arahy.Tifrunner.gnm1.ann1.7MAL8N Arachis hypogaea HOM05D007613 ORTHO05D009344 3.6e-46 188.3 130 65.4
Medtr1g088460 Medicago truncatula HOM05D007613 ORTHO05D009344 4.7e-46 188.0 129 71.3
PGR119G2478 Punica granatum HOM05D007613 ORTHO05D009344 6.1e-46 187.6 130 72.3
Ca_10334_v3 Cicer arietinum L. HOM05D007613 ORTHO05D009344 3.1e-45 185.3 129 71.3
MD03G1288400 Malus domestica HOM05D007613 ORTHO05D009344 7.5e-44 180.6 128 68.8
vmacro15014 Vaccinium macrocarpon HOM05D007613 ORTHO05D009344 7.5e-44 180.6 135 63.7
Prupe.8G261600 Prunus persica HOM05D007613 ORTHO05D009344 9.8e-44 180.3 130 66.9
AT3G62880 Arabidopsis thaliana HOM05D007613 ORTHO05D009344 2.2e-43 179.1 129 65.1
Glyma.10G018300 Glycine max HOM05D007613 ORTHO05D009344 2.9e-43 178.7 132 65.2
AL5G45650 Arabidopsis lyrata HOM05D007613 ORTHO05D009344 8.3e-43 177.2 129 63.6
Cpa.g.sc9.260 Carica papaya HOM05D000286 ORTHO05D000170 1.1e-42 176.8 116 73.3
Thecc.01G300700 Theobroma cacao HOM05D007613 ORTHO05D009344 1.1e-42 176.8 109 70.6
Gohir.D12G134100 Gossypium hirsutum HOM05D007613 ORTHO05D009344 9.2e-42 173.7 126 64.3
Gorai.008G145100 Gossypium raimondii HOM05D007613 ORTHO05D009344 1.6e-41 172.9 126 63.5
Lalb_Chr06g0166471 Lupinus albus HOM05D007613 ORTHO05D009344 3.5e-41 171.8 128 61.7
Atru.chr5.1146 Acer truncatum HOM05D007613 ORTHO05D009344 1.7e-40 169.5 126 65.1
Thhalv10006304m.g Eutrema salsugineum HOM05D007613 ORTHO05D009344 3.0e-40 168.7 129 61.2
Sp5g00640 Schrenkiella parvula HOM05D007613 ORTHO05D009344 5.0e-40 167.9 129 60.5
THA.LOC104798831 Tarenaya hassleriana HOM05D007613 ORTHO05D009344 1.9e-39 166.0 130 60.8
Peaxi162Scf00140g01222 Petunia axillaris HOM05D007613 ORTHO05D009344 4.3e-39 164.9 128 61.7
Solyc06g084550.3 Solanum lycopersicum HOM05D007613 ORTHO05D009344 4.3e-39 164.9 128 60.9
BraA04t15767Z Brassica rapa HOM05D007613 ORTHO05D009344 5.6e-39 164.5 129 58.1
Nitab4.5_0002820g0060 Nicotiana tabacum HOM05D007613 ORTHO05D009344 5.6e-39 164.5 128 61.7
Sopen06g035930 Solanum pennellii HOM05D007613 ORTHO05D009344 5.6e-39 164.5 128 60.9
Aa31LG10G16510 Aethionema arabicum HOM05D007613 ORTHO05D009344 7.3e-39 164.1 130 58.5
CARHR173140 Cardamine hirsuta HOM05D007613 ORTHO05D009344 1.2e-38 163.3 129 58.9
Nitab4.5_0019054g0010 Nicotiana tabacum HOM05D007613 ORTHO05D009344 1.6e-38 162.9 128 60.2
BcaB02g08092 Brassica carinata HOM05D007613 ORTHO05D009344 2.8e-38 162.2 129 56.6
MSTRG.18147 Avicennia marina HOM05D007613 ORTHO05D009344 6.2e-38 161.0 129 58.1
C04p30380 Brassica napus HOM05D007613 ORTHO05D009344 1.4e-37 159.8 129 58.1
BolC4t24569H Brassica oleracea HOM05D007613 ORTHO05D009344 1.4e-37 159.8 129 58.1
ECA248G1192 Erigeron canadensis HOM05D007613 ORTHO05D009344 1.4e-37 159.8 127 60.6
Lalb_Chr02g0146351 Lupinus albus HOM05D007613 ORTHO05D009344 1.8e-37 159.5 130 56.2
HanXRQChr13g0413041 Helianthus annuus HOM05D007613 ORTHO05D009344 2.3e-37 159.1 125 60.0
TWI59G0030 Tripterygium wilfordii HOM05D007613 ORTHO05D009344 4.0e-37 158.3 130 56.2
ClCG09G005860 Citrullus lanatus HOM05D007613 ORTHO05D009344 8.9e-37 157.1 137 59.1
EL10Ac7g17473 Beta vulgaris HOM05D007613 ORTHO05D009344 2.0e-36 156.0 129 60.5
Lsat_1_v5_gn_5_191040 Lactuca sativa HOM05D007613 ORTHO05D009344 2.0e-36 156.0 127 59.8
CAN.G1209.25 Capsicum annuum HOM05D007613 ORTHO05D009344 7.5e-36 154.1 128 57.0
Hma1.2p1_0491F.1_g164570 Hydrangea macrophylla HOM05D007613 ORTHO05D009344 1.3e-35 153.3 131 58.8
RcHm_v2.0_Chr6g0294031 Rosa chinensis HOM05D007613 ORTHO05D009344 3.7e-35 151.8 119 63.0
Cc01_g20860 Coffea canephora HOM05D007613 ORTHO05D009344 6.4e-35 151.0 125 57.6
Oeu048336.2 Olea europaea HOM05D007613 ORTHO05D009344 1.9e-34 149.4 129 55.0
PSO170G2016 Papaver somniferum HOM05D007613 ORTHO05D009344 1.9e-34 149.4 129 55.0
CDE08G0198 Ceratophyllum demersum HOM05D007613 ORTHO05D009344 3.2e-34 148.7 125 55.2
Sed0015913 Sechium edule HOM05D007613 ORTHO05D009344 5.4e-34 147.9 97 69.1
Migut.D00222 Erythranthe guttata HOM05D007613 ORTHO05D009344 2.1e-33 146.0 127 55.1
Ah.08g213430 Amaranthus hybridus HOM05D000286 ORTHO05D000170 3.5e-33 145.2 126 55.6
Haze_04939 Corylus avellana HOM05D007613 ORTHO05D009344 6.0e-33 144.4 103 69.9
DCAR_018332 Daucus carota HOM05D007613 ORTHO05D009344 1.0e-32 143.7 126 54.8
CSS0026666 Camellia sinensis var. sinensis HOM05D007613 ORTHO05D009344 1.9e-31 139.4 87 73.6
Sabra14G0095700 Salix brachista HOM05D007613 ORTHO05D009344 9.5e-31 137.1 129 58.9
A04p00480 Brassica napus HOM05D007613 ORTHO05D009344 3.6e-30 135.2 105 58.1
Nn3g21498 Nelumbo nucifera HOM05D007613 ORTHO05D009344 8.1e-30 134.0 86 70.9
COL.COLO4_23344 Corchorus olitorius HOM05D007613 ORTHO05D009344 5.2e-29 131.3 90 63.3
FvH4_2g25740 Fragaria vesca HOM05D007613 ORTHO05D009344 1.4e-26 123.2 127 48.0
Rhsim01G0285300 Rhododendron simsii HOM05D007613 ORTHO05D009344 4.1e-26 121.7 101 56.4
Migut.B01150 Erythranthe guttata HOM05D007613 ORTHO05D009344 1.2e-25 120.2 108 53.7
Aqoxy2G02939 Aquilegia oxysepala HOM05D007613 ORTHO05D009344 3.5e-25 118.6 118 48.3
FAN20G1450 Fragaria x ananassa HOM05D007613 ORTHO05D009344 8.6e-24 114.0 147 43.5
ATR0706G141 Amborella trichopoda HOM05D007613 ORTHO05D009344 7.3e-23 110.9 119 43.7
PGSC0003DMG400024046 Solanum tuberosum HOM05D007613 ORTHO05D009344 2.8e-22 109.0 151 42.4
HanXRQChr13g0413071 Helianthus annuus HOM05D007613 ORTHO05D009344 5.2e-21 104.8 74 64.9
Cfa005911 Carpinus fangiana HOM05D007613 ORTHO05D009344 2.0e-20 102.8 136 50.0
SMO347G0100 Selaginella moellendorffii HOM05D007613 ORTHO05D009344 4.4e-20 101.7 94 48.9
Pp3c19_22480 Physcomitrium patens HOM05D007613 ORTHO05D009344 3.8e-19 98.6 119 39.5
FAN27G2766 Fragaria x ananassa HOM05D007613 ORTHO05D009344 1.1e-18 97.1 87 54.0
Actinidia21047 Actinidia chinensis HOM05D007613 ORTHO05D009344 4.2e-18 95.1 63 74.6
BcaC02g10319 Brassica carinata HOM05D007613 ORTHO05D009344 9.2e-18 94.0 77 55.8
MD11G1309700 Malus domestica HOM05D007613 ORTHO05D009344 7.8e-17 90.9 65 66.2
Mapoly0048s0107 Marchantia polymorpha HOM05D007613 ORTHO05D009344 6.6e-16 87.8 96 42.7
Gohir.A12G130300 Gossypium hirsutum HOM05D007613 ORTHO05D009344 8.7e-16 87.4 136 41.2
SGA_v2.0_scaffold1G00364 Striga asiatica HOM05D001636 ORTHO05D003817 1.5e-15 86.7 70 55.7
AUR62008666 Chenopodium quinoa HOM05D007613 ORTHO05D009344 6.2e-14 81.3 77 50.6
SalBow3G3757 Salvia bowleyana HOM05D007613 ORTHO05D009344 1.4e-13 80.1 61 57.4
SHI15147 Sapria himalayana HOM05D007613 ORTHO05D009344 1.8e-13 79.7 63 57.1
Hund18170 Selenicereus undatus HOM05D007613 ORTHO05D009344 3.4e-12 75.5 66 59.1
AUR62033103 Chenopodium quinoa HOM05D007613 ORTHO05D009344 1.1e-10 70.5 129 35.7
FAN15G1907 Fragaria x ananassa HOM05D007613 ORTHO05D009344 7.1e-10 67.8 96 39.6
FAN24G3183 Fragaria x ananassa HOM05D007613 ORTHO05D009344 1.6e-09 66.6 64 45.3
Carub.0005s2952 Capsella rubella HOM05D001675 ORTHO05D001808 2.7e-09 65.9 47 59.6
A07p19380 Brassica napus HOM05D002174 ORTHO05D005941 6.0e-09 64.7 95 36.8
BraA07t29643Z Brassica rapa HOM05D002174 ORTHO05D005941 6.0e-09 64.7 95 36.8
BcaC02g11023 Brassica carinata HOM05D002174 ORTHO05D005941 3.9e-08 62.0 95 35.8
C04p22080 Brassica napus HOM05D002174 ORTHO05D005941 3.9e-08 62.0 95 35.8
BolC4t23731H Brassica oleracea HOM05D002174 ORTHO05D005941 3.9e-08 62.0 95 35.8
Thhalv10017379m.g Eutrema salsugineum HOM05D002174 ORTHO05D005941 3.9e-08 62.0 117 31.6
FAN16G0236 Fragaria x ananassa HOM05D002174 ORTHO05D005941 3.9e-08 62.0 97 34.0
SEGI_11453 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 5.1e-08 61.6 121 30.6
BcaB02g10211 Brassica carinata HOM05D002174 ORTHO05D005941 6.6e-08 61.2 95 35.8
THA.LOC104800661 Tarenaya hassleriana HOM05D002174 ORTHO05D005941 8.7e-08 60.8 93 34.4
unitig_0.g668 Utricularia gibba HOM05D007613 ORTHO05D009344 1.1e-07 60.5 36 72.2
Glyma.02G017851 Glycine max HOM05D007613 ORTHO05D009344 1.5e-07 60.1 50 68.0
SEGI_00670 Sequoiadendron giganteum HOM05D002174 ORTHO05D005941 1.5e-07 60.1 92 35.9
CARHR122070 Cardamine hirsuta HOM05D002174 ORTHO05D005941 1.9e-07 59.7 118 32.2
Cfa009013 Carpinus fangiana HOM05D002174 ORTHO05D005941 3.3e-07 58.9 97 30.9
FvH4_3g36080 Fragaria vesca HOM05D002174 ORTHO05D005941 3.3e-07 58.9 95 32.6
vmacro14518 Vaccinium macrocarpon HOM05D002174 ORTHO05D005941 3.3e-07 58.9 97 32.0
AagrBONN_evm.TU.Sc2ySwM_228.3892 Anthoceros agrestis HOM05D002174 ORTHO05D005941 7.3e-07 57.8 92 32.6
FAN21G2955 Fragaria x ananassa HOM05D002174 ORTHO05D005941 7.3e-07 57.8 95 31.6
FAN25G1103 Fragaria x ananassa HOM05D002174 ORTHO05D005941 9.6e-07 57.4 95 31.6
Prupe.6G077600 Prunus persica HOM05D002174 ORTHO05D005941 9.6e-07 57.4 95 32.6
Sabra16G0144700 Salix brachista HOM05D002174 ORTHO05D005941 9.6e-07 57.4 95 32.6
CiPaw.13G094300 Carya illinoinensis HOM05D002174 ORTHO05D005941 1.6e-06 56.6 106 29.2
AUR62030424 Chenopodium quinoa HOM05D002174 ORTHO05D005941 1.6e-06 56.6 95 33.7
Os05g0111200 Oryza sativa ssp. japonica HOM05D002174 ORTHO05D005941 2.8e-06 55.8 97 28.9
RcHm_v2.0_Chr5g0064511 Rosa chinensis HOM05D002174 ORTHO05D005941 2.8e-06 55.8 104 29.8
CSS0007494 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005941 3.6e-06 55.5 118 28.8
Hund14299 Selenicereus undatus HOM05D002174 ORTHO05D005941 3.6e-06 55.5 118 31.4
Dinv42951 Davidia involucrata HOM05D002174 ORTHO05D005941 4.8e-06 55.1 97 29.9
Dinv43149 Davidia involucrata HOM05D002174 ORTHO05D005941 4.8e-06 55.1 97 29.9
Hma1.2p1_0035F.1_g022420 Hydrangea macrophylla HOM05D002174 ORTHO05D005941 4.8e-06 55.1 97 29.9
Sc07g0007940 Simmondsia chinensis HOM05D002174 ORTHO05D005941 4.8e-06 55.1 95 34.7
Actinidia23940 Actinidia chinensis HOM05D002174 ORTHO05D005941 6.2e-06 54.7 97 30.9
Ah.12g058520 Amaranthus hybridus HOM05D002174 ORTHO05D005941 6.2e-06 54.7 98 29.6
MSTRG.17832 Avicennia marina HOM05D002174 ORTHO05D005941 6.2e-06 54.7 118 30.5
MD03G1093500 Malus domestica HOM05D002174 ORTHO05D005941 6.2e-06 54.7 102 29.4
TPR.G34319 Trifolium pratense HOM05D002174 ORTHO05D005941 6.2e-06 54.7 115 27.8
CSS0035653 Camellia sinensis var. sinensis HOM05D002174 ORTHO05D005941 8.1e-06 54.3 118 29.7
Cfa011503 Carpinus fangiana HOM05D002174 ORTHO05D005941 8.1e-06 54.3 87 33.3
MD11G1108500 Malus domestica HOM05D002174 ORTHO05D005941 8.1e-06 54.3 96 31.2


User provided reference genes

Program Settings