Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p028401 Quercus lobata HOM05D006737 ORTHO05D008418 2.4e-184 648.7 314 100.0
Cfa005906 Carpinus fangiana HOM05D006737 ORTHO05D008418 1.1e-133 480.3 316 71.2
Haze_04944 Corylus avellana HOM05D006737 ORTHO05D008418 7.9e-132 474.2 314 71.0
Ciclev10021225m.g Citrus clementina HOM05D006737 ORTHO05D008418 2.8e-121 439.1 317 66.2
CiPaw.07G109800 Carya illinoinensis HOM05D006737 ORTHO05D008418 3.7e-121 438.7 351 61.8
FAN24G1027 Fragaria x ananassa HOM05D006737 ORTHO05D008418 6.3e-121 438.0 317 66.9
FAN15G3576 Fragaria x ananassa HOM05D006737 ORTHO05D008418 8.2e-121 437.6 317 66.9
FvH4_2g25800 Fragaria vesca HOM05D006737 ORTHO05D008418 1.8e-120 436.4 317 66.6
Atru.chr5.1140 Acer truncatum HOM05D006737 ORTHO05D008418 2.4e-120 436.0 318 65.1
Prupe.8G262100 Prunus persica HOM05D006737 ORTHO05D008418 5.3e-120 434.9 318 65.7
RcHm_v2.0_Chr6g0294111 Rosa chinensis HOM05D006737 ORTHO05D008418 1.6e-119 433.3 319 65.5
FAN27G1696 Fragaria x ananassa HOM05D006737 ORTHO05D008418 1.1e-117 427.2 330 63.9
MD11G1309100 Malus domestica HOM05D006737 ORTHO05D008418 5.5e-117 424.9 318 64.5
Manes.01G219800 Manihot esculenta HOM05D006737 ORTHO05D008418 9.4e-117 424.1 305 64.6
Potri.002G203900 Populus trichocarpa HOM05D006737 ORTHO05D008418 1.6e-116 423.3 316 66.1
TWI14G0449 Tripterygium wilfordii HOM05D006737 ORTHO05D008418 2.7e-116 422.5 315 63.8
MD03G1288800 Malus domestica HOM05D006737 ORTHO05D008418 3.6e-116 422.2 319 62.1
GSVIVG01028025001 Vitis vinifera HOM05D006737 ORTHO05D008418 9.1e-112 407.5 302 64.9
FAN20G1602 Fragaria x ananassa HOM05D006737 ORTHO05D008418 2.0e-111 406.4 313 64.2
Cpa.g.sc9.256 Carica papaya HOM05D006737 ORTHO05D008418 1.9e-109 399.8 314 61.5
vmacro02447 Vaccinium macrocarpon HOM05D006737 ORTHO05D008418 2.5e-109 399.4 314 62.4
Thecc.01G301300 Theobroma cacao HOM05D006737 ORTHO05D008418 5.5e-109 398.3 354 56.2
CSS0030900 Camellia sinensis var. sinensis HOM05D006737 ORTHO05D008418 2.7e-108 396.0 316 63.6
Sabra02G0155300 Salix brachista HOM05D006737 ORTHO05D008418 4.0e-107 392.1 358 56.7
Nn3g21504 Nelumbo nucifera HOM05D006737 ORTHO05D008418 2.0e-106 389.8 312 59.9
Gorai.008G144900 Gossypium raimondii HOM05D006737 ORTHO05D008418 4.4e-106 388.7 323 57.9
Gohir.A12G130100 Gossypium hirsutum HOM05D006737 ORTHO05D008418 1.7e-105 386.7 323 57.6
TAR365G0544 Trochodendron aralioides HOM05D006737 ORTHO05D008418 2.8e-105 386.0 322 60.2
Gohir.D12G133900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 3.1e-104 382.5 323 57.0
PGR119G0152 Punica granatum HOM05D006737 ORTHO05D008418 2.0e-103 379.8 316 58.2
Rhsim13G0009900 Rhododendron simsii HOM05D006737 ORTHO05D008418 5.9e-103 378.3 319 59.6
Gohir.D08G085900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 1.7e-102 376.7 295 61.0
CiPaw.07G109600 Carya illinoinensis HOM05D006737 ORTHO05D008418 2.3e-102 376.3 254 69.3
Gorai.004G090400 Gossypium raimondii HOM05D006737 ORTHO05D008418 2.9e-102 375.9 295 61.0
Gohir.A08G076400 Gossypium hirsutum HOM05D006737 ORTHO05D008418 3.8e-102 375.6 294 60.2
Lj6g0001904 Lotus japonicus HOM05D006737 ORTHO05D008418 4.3e-101 372.1 305 56.7
Eucgr.H01107 Eucalyptus grandis HOM05D006737 ORTHO05D008418 3.6e-100 369.0 314 56.4
Glyma.19G211400 Glycine max HOM05D006737 ORTHO05D008418 3.4e-98 362.5 299 57.9
Hma1.2p1_0491F.1_g164620 Hydrangea macrophylla HOM05D006737 ORTHO05D008418 5.7e-98 361.7 296 60.8
MBI19_g26092_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 7.5e-98 361.3 304 57.2
Phvul.001G207600 Phaseolus vulgaris HOM05D006737 ORTHO05D008418 1.3e-97 360.5 305 57.4
CANSAT25G2451 Cannabis sativa HOM05D006737 ORTHO05D008418 5.4e-96 355.1 317 56.5
Aqoxy2G02933 Aquilegia oxysepala HOM05D006737 ORTHO05D008418 1.2e-95 354.0 320 55.6
Duzib138G1512 Durio zibethinus HOM05D006737 ORTHO05D008418 2.0e-95 353.2 255 65.1
PSO170G1161 Papaver somniferum HOM05D006737 ORTHO05D008418 1.5e-93 347.1 300 56.3
ClCG01G014930 Citrullus lanatus HOM05D006737 ORTHO05D008418 1.9e-93 346.7 306 54.9
CsaV3_6G041030 Cucumis sativus L. HOM05D006737 ORTHO05D008418 9.5e-93 344.4 306 54.2
arahy.Tifrunner.gnm1.ann1.AY1VU4 Arachis hypogaea HOM05D006737 ORTHO05D008418 1.2e-92 344.0 311 55.3
MELO3C024580.2 Cucumis melo HOM05D006737 ORTHO05D008418 2.1e-92 343.2 306 53.9
MSTRG.12607 Avicennia marina HOM05D006737 ORTHO05D008418 1.0e-91 340.9 322 52.8
PSO407G0435 Papaver somniferum HOM05D006737 ORTHO05D008418 1.0e-91 340.9 300 55.7
Sopen06g035940 Solanum pennellii HOM05D006737 ORTHO05D008418 2.3e-91 339.7 284 56.7
EL10Ac7g17513 Beta vulgaris HOM05D006737 ORTHO05D008418 6.8e-91 338.2 295 55.9
Solyc06g084570.4 Solanum lycopersicum HOM05D006737 ORTHO05D008418 6.8e-91 338.2 288 55.9
ECA236G1530 Erigeron canadensis HOM05D006737 ORTHO05D008418 8.9e-91 337.8 282 56.7
VMungo1383G2597 Vigna mungo HOM05D006737 ORTHO05D008418 2.0e-90 336.7 256 62.1
DCAR_002840 Daucus carota HOM05D006737 ORTHO05D008418 3.4e-90 335.9 309 53.7
Lsat_1_v5_gn_8_164261 Lactuca sativa HOM05D006737 ORTHO05D008418 5.8e-90 335.1 316 52.8
BcaB01g02446 Brassica carinata HOM05D006737 ORTHO05D008418 1.3e-89 334.0 309 53.1
Thhalv10028823m.g Eutrema salsugineum HOM05D006737 ORTHO05D008418 1.3e-89 334.0 307 52.8
Lalb_Chr02g0146391 Lupinus albus HOM05D006737 ORTHO05D008418 3.7e-89 332.4 303 53.8
Nitab4.5_0004367g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 6.4e-89 331.6 362 49.7
Hund05430 Selenicereus undatus HOM05D006737 ORTHO05D008418 1.1e-88 330.9 305 51.8
AL6G50710 Arabidopsis lyrata HOM05D006737 ORTHO05D008418 1.9e-88 330.1 306 52.9
MBI19_g25361_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 4.1e-88 328.9 348 49.7
Sc05g0003760 Simmondsia chinensis HOM05D006737 ORTHO05D008418 4.1e-88 328.9 303 53.8
BcaC01g06761 Brassica carinata HOM05D006737 ORTHO05D008418 7.0e-88 328.2 290 55.2
SalBow2G2271 Salvia bowleyana HOM05D006737 ORTHO05D008418 7.0e-88 328.2 254 57.5
CAN.G1209.24 Capsicum annuum HOM05D006737 ORTHO05D008418 1.6e-87 327.0 282 55.3
Carub.0006s3475 Capsella rubella HOM05D006737 ORTHO05D008418 1.0e-86 324.3 307 52.4
CARHR250600 Cardamine hirsuta HOM05D006737 ORTHO05D008418 1.3e-86 323.9 294 52.7
AUR62008669 Chenopodium quinoa HOM05D006737 ORTHO05D008418 1.3e-86 323.9 318 50.6
BolC3t16077H Brassica oleracea HOM05D006737 ORTHO05D008418 3.0e-86 322.8 315 51.4
AUR62025575 Chenopodium quinoa HOM05D006737 ORTHO05D008418 3.9e-86 322.4 318 51.3
Migut.O00484 Erythranthe guttata HOM05D006737 ORTHO05D008418 5.0e-86 322.0 315 52.1
Sp6g02290 Schrenkiella parvula HOM05D006737 ORTHO05D008418 5.0e-86 322.0 312 52.9
Aa31LG5G2050 Aethionema arabicum HOM05D006737 ORTHO05D008418 6.6e-86 321.6 288 53.1
Cc01_g20900 Coffea canephora HOM05D006737 ORTHO05D008418 6.6e-86 321.6 319 52.7
Actinidia01489 Actinidia chinensis HOM05D006737 ORTHO05D008418 1.1e-85 320.9 235 62.1
arahy.Tifrunner.gnm1.ann1.B4PCIP Arachis hypogaea HOM05D006737 ORTHO05D008418 1.1e-85 320.9 340 50.0
A03p31080 Brassica napus HOM05D006737 ORTHO05D008418 1.5e-85 320.5 317 51.4
C03p37890 Brassica napus HOM05D006737 ORTHO05D008418 1.5e-85 320.5 316 51.3
BraA03t12285Z Brassica rapa HOM05D006737 ORTHO05D008418 1.5e-85 320.5 317 51.4
Oeu048335.1 Olea europaea HOM05D006737 ORTHO05D008418 1.5e-85 320.5 234 62.4
Migut.N01508 Erythranthe guttata HOM05D006737 ORTHO05D008418 9.5e-85 317.8 315 51.4
HanXRQChr04g0114161 Helianthus annuus HOM05D006737 ORTHO05D008418 4.7e-84 315.5 301 51.2
SGA_v2.0_scaffold198G41142 Striga asiatica HOM05D006737 ORTHO05D008418 1.5e-82 310.5 323 50.5
Peaxi162Scf00140g01213 Petunia axillaris HOM05D006737 ORTHO05D008418 2.6e-82 309.7 258 58.5
CDE01G0235 Ceratophyllum demersum HOM05D006737 ORTHO05D008418 8.3e-81 304.7 298 49.0
Migut.J01135 Erythranthe guttata HOM05D006737 ORTHO05D008418 9.2e-80 301.2 273 54.6
AT4G02405 Arabidopsis thaliana HOM05D006737 ORTHO05D008418 1.9e-77 293.5 278 51.1
COL.COLO4_23338 Corchorus olitorius HOM05D006737 ORTHO05D008418 4.3e-77 292.4 209 62.7
Sed0017513 Sechium edule HOM05D006737 ORTHO05D008418 7.8e-71 271.6 222 56.8
Lj2A1195G25 Lonicera japonica HOM05D006737 ORTHO05D008418 1.7e-65 253.8 267 50.2
Os07g0247100 Oryza sativa ssp. japonica HOM05D006737 ORTHO05D008418 3.2e-64 249.6 308 40.3
Zm00001eb097030 Zea mays HOM05D006737 ORTHO05D008418 1.1e-61 241.1 292 42.1
Dinv33057 Davidia involucrata HOM05D006737 ORTHO05D008418 6.9e-51 205.3 157 65.0
Oeu010666.1 Olea europaea HOM05D006737 ORTHO05D008418 2.0e-42 177.2 143 56.6
Pp3c24_12380 Physcomitrium patens HOM05D006737 ORTHO05D008418 2.9e-41 173.3 317 36.0
Nitab4.5_0002820g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 8.7e-38 161.8 139 56.8
PGSC0003DMG400024036 Solanum tuberosum HOM05D006737 ORTHO05D008418 4.8e-36 156.0 125 56.8
arahy.Tifrunner.gnm1.ann1.MB1A81 Arachis hypogaea HOM05D006737 ORTHO05D008418 4.2e-32 142.9 123 54.5
Mapoly0132s0018 Marchantia polymorpha HOM05D006737 ORTHO05D008418 3.9e-30 136.3 237 35.4
VMungo1383G3174 Vigna mungo HOM05D006737 ORTHO05D008418 4.1e-27 126.3 254 33.5
arahy.Tifrunner.gnm1.ann1.MU6BTE Arachis hypogaea HOM05D006737 ORTHO05D008418 1.4e-24 117.9 116 48.3
Dinv31287 Davidia involucrata HOM05D006737 ORTHO05D008418 3.7e-20 103.2 90 52.2
SEGI_39136 Sequoiadendron giganteum HOM05D006737 ORTHO05D008418 4.8e-20 102.8 141 38.3
Dinv07247 Davidia involucrata HOM05D006737 ORTHO05D008418 1.1e-19 101.7 90 51.1
Dinv17961 Davidia involucrata HOM05D006737 ORTHO05D008418 7.7e-18 95.5 86 51.2
BcaB01g02447 Brassica carinata HOM05D006737 ORTHO05D008418 2.0e-13 80.9 63 61.9
BcaB01g02050 Brassica carinata HOM05D006737 ORTHO05D008418 4.5e-10 69.7 101 40.6
Cre01.g055469 Chlamydomonas reinhardtii HOM05D006737 ORTHO05D008418 3.2e-08 63.5 102 34.3
Dinv02523 Davidia involucrata HOM05D006737 ORTHO05D008418 4.2e-08 63.2 57 50.9
MCO02G241 Micromonas commoda HOM05D006737 ORTHO05D008418 7.2e-08 62.4 215 24.2
Dinv32677 Davidia involucrata HOM05D006737 ORTHO05D008418 1.2e-07 61.6 51 54.9


User provided reference genes

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