Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 4.1e-47 191.0 97 100.0
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 1.5e-28 129.4 69 92.8
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 9.6e-28 126.7 69 88.4
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.6e-27 125.9 68 91.2
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 6.2e-27 124.0 69 88.4
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 6.2e-27 124.0 74 79.7
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 8.1e-27 123.6 74 81.1
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 1.1e-26 123.2 69 87.0
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 1.4e-26 122.9 68 86.8
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.8e-26 122.5 74 82.4
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 3.1e-26 121.7 68 86.8
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 5.3e-26 120.9 68 85.3
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 6.9e-26 120.6 68 83.8
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 9.0e-26 120.2 69 81.2
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 2.0e-25 119.0 69 82.6
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 2.6e-25 118.6 75 76.0
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 2.6e-25 118.6 74 78.4
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 3.4e-25 118.2 69 82.6
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 3.4e-25 118.2 69 82.6
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 4.5e-25 117.9 69 84.1
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 4.5e-25 117.9 69 84.1
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 5.8e-25 117.5 69 81.2
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 7.6e-25 117.1 76 73.7
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 7.6e-25 117.1 69 79.7
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 9.9e-25 116.7 74 75.7
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 9.9e-25 116.7 74 75.7
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 9.9e-25 116.7 74 75.7
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 9.9e-25 116.7 69 81.2
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.3e-24 116.3 69 81.2
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.3e-24 116.3 68 83.8
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.3e-24 116.3 68 82.4
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 1.7e-24 115.9 74 73.0
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.7e-24 115.9 69 81.2
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.7e-24 115.9 69 81.2
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.2e-24 115.5 74 74.3
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 2.2e-24 115.5 74 77.0
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 2.9e-24 115.2 67 80.6
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.9e-24 115.2 74 74.3
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.9e-24 115.2 74 74.3
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 2.9e-24 115.2 69 79.7
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 3.8e-24 114.8 69 81.2
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 3.8e-24 114.8 69 76.8
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 4.9e-24 114.4 74 74.3
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 4.9e-24 114.4 76 72.4
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 4.9e-24 114.4 76 72.4
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 6.4e-24 114.0 69 81.2
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 6.4e-24 114.0 69 76.8
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 6.4e-24 114.0 74 74.3
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 8.4e-24 113.6 69 81.2
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 8.4e-24 113.6 75 76.0
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 8.4e-24 113.6 75 76.0
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 8.4e-24 113.6 76 71.1
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.1e-23 113.2 69 76.8
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 1.1e-23 113.2 74 74.3
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.1e-23 113.2 69 76.8
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 1.1e-23 113.2 90 62.2
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 1.4e-23 112.8 69 78.3
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.4e-23 112.8 68 80.9
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.4e-23 112.8 68 80.9
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 1.4e-23 112.8 74 74.3
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.4e-23 112.8 74 74.3
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.4e-23 112.8 74 73.0
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 1.4e-23 112.8 74 73.0
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.4e-23 112.8 74 73.0
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 2.4e-23 112.1 74 71.6
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.4e-23 112.1 75 78.7
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 2.4e-23 112.1 74 73.0
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.2e-23 111.7 69 79.7
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 4.2e-23 111.3 74 73.0
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 4.2e-23 111.3 74 73.0
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 4.2e-23 111.3 68 76.5
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 4.2e-23 111.3 96 59.4
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 5.5e-23 110.9 68 79.4
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.5e-23 110.9 68 79.4
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 5.5e-23 110.9 69 76.8
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 5.5e-23 110.9 69 73.9
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 5.5e-23 110.9 74 71.6
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 7.1e-23 110.5 74 71.6
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 7.1e-23 110.5 74 70.3
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 7.1e-23 110.5 69 75.4
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 9.3e-23 110.2 69 73.9
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 9.3e-23 110.2 69 75.4
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.2e-22 109.8 74 73.0
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 1.6e-22 109.4 97 60.8
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.6e-22 109.4 68 76.5
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 2.1e-22 109.0 74 71.6
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 2.1e-22 109.0 68 77.9
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.1e-22 109.0 74 73.0
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.1e-22 109.0 74 68.9
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.1e-22 109.0 69 78.3
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.1e-22 109.0 69 78.3
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 2.7e-22 108.6 69 76.8
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.7e-22 108.6 69 73.9
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 2.7e-22 108.6 74 70.3
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 3.5e-22 108.2 74 70.3
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 3.5e-22 108.2 69 73.9
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 3.5e-22 108.2 69 75.4
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 4.6e-22 107.8 69 73.9
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 4.6e-22 107.8 69 73.9
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 4.6e-22 107.8 68 75.0
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 6.0e-22 107.5 74 68.9
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 7.9e-22 107.1 74 70.3
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 7.9e-22 107.1 74 70.3
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 7.9e-22 107.1 74 70.3
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.0e-21 106.7 74 68.9
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 1.0e-21 106.7 74 70.3
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.0e-21 106.7 74 68.9
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.0e-21 106.7 74 68.9
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 1.0e-21 106.7 70 74.3
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 1.3e-21 106.3 74 70.3
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 1.3e-21 106.3 69 72.5
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.8e-21 105.9 74 70.3
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 2.3e-21 105.5 68 73.5
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 2.3e-21 105.5 69 73.9
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 3.9e-21 104.8 74 68.9
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 6.7e-21 104.0 69 71.0
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 6.7e-21 104.0 75 69.3
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 1.1e-20 103.2 69 71.0
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 1.1e-20 103.2 69 71.0
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 1.5e-20 102.8 74 68.9
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 2.5e-20 102.1 74 66.2
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 2.5e-20 102.1 68 70.6
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 3.3e-20 101.7 69 72.5
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 5.6e-20 100.9 68 70.6
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 5.6e-20 100.9 69 68.1
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 7.4e-20 100.5 74 70.3
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 7.4e-20 100.5 64 76.6
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 7.4e-20 100.5 74 63.5
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 7.4e-20 100.5 75 68.0
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 7.4e-20 100.5 73 67.1
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 9.6e-20 100.1 74 66.2
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 1.3e-19 99.8 69 66.7
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 1.6e-19 99.4 67 73.1
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 2.4e-18 95.5 68 67.6
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 4.0e-18 94.7 61 75.4
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 2.0e-17 92.4 69 59.4
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 2.0e-17 92.4 68 60.3
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 3.4e-17 91.7 74 56.8
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 5.8e-17 90.9 76 61.8
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 3.8e-16 88.2 51 84.3
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 2.5e-15 85.5 85 57.6
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 4.2e-15 84.7 52 75.0
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 4.2e-15 84.7 69 58.0
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.1e-14 82.4 68 66.2
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 1.0e-13 80.1 62 66.1
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 1.1e-12 76.6 49 73.5
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 2.4e-10 68.9 78 46.2
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.0e-09 65.9 63 50.8
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 2.6e-09 65.5 99 42.4
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 3.4e-09 65.1 67 52.2
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 7.6e-09 63.9 46 69.6
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 1.7e-08 62.8 77 41.6
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 9.3e-07 57.0 41 68.3
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-06 56.6 39 74.4
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 2.1e-06 55.8 27 85.2
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 2.7e-06 55.5 31 74.2


User provided reference genes

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