Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p026783 Quercus lobata HOM05D000498 ORTHO05D000354 2.9e-41 171.4 84 100.0
QL12p026808 Quercus lobata HOM05D000498 ORTHO05D000354 1.5e-16 89.4 50 90.0
Cfa005972 Carpinus fangiana HOM05D000498 ORTHO05D000354 1.1e-14 83.2 50 84.0
Dinv19727 Davidia involucrata HOM05D000498 ORTHO05D000354 1.8e-14 82.4 50 82.0
Cfa005971 Carpinus fangiana HOM05D000498 ORTHO05D000354 2.4e-14 82.0 50 82.0
Haze_04874 Corylus avellana HOM05D000498 ORTHO05D000354 6.8e-14 80.5 51 78.4
Thecc.01G295400 Theobroma cacao HOM05D000498 ORTHO05D000354 1.7e-12 75.9 50 74.0
CSS0004056 Camellia sinensis var. sinensis HOM05D000498 ORTHO05D000354 9.2e-11 70.1 50 74.0
Rhsim13G0014200 Rhododendron simsii HOM05D000498 ORTHO05D000354 1.2e-10 69.7 47 76.6
GSVIVG01010939001 Vitis vinifera HOM05D000498 ORTHO05D000354 1.2e-10 69.7 50 68.0
Atru.chr5.1214 Acer truncatum HOM05D000498 ORTHO05D000354 1.6e-10 69.3 47 68.1
CSS0022141 Camellia sinensis var. sinensis HOM05D000498 ORTHO05D000354 1.6e-10 69.3 50 74.0
vmacro02476 Vaccinium macrocarpon HOM05D000498 ORTHO05D000354 4.6e-10 67.8 49 71.4
FAN15G2562 Fragaria x ananassa HOM05D000498 ORTHO05D000354 1.7e-09 65.9 47 63.8
FAN24G3004 Fragaria x ananassa HOM05D000498 ORTHO05D000354 2.3e-09 65.5 47 61.7
Atru.chr5.1213 Acer truncatum HOM05D000498 ORTHO05D000354 5.1e-09 64.3 50 56.0
CSS0049526 Camellia sinensis var. sinensis HOM05D000498 ORTHO05D000354 5.6e-08 60.8 48 56.2
TAR636G0415 Trochodendron aralioides HOM05D000498 ORTHO05D000354 7.3e-08 60.5 49 53.1
PGR119G2171 Punica granatum HOM05D000498 ORTHO05D000354 1.2e-07 59.7 50 60.0
SalBow3G4098 Salvia bowleyana HOM05D000498 ORTHO05D000354 1.6e-07 59.3 46 60.9
QL12p026833 Quercus lobata HOM05D000498 ORTHO05D000354 2.1e-07 58.9 50 50.0
Aqoxy3G02474 Aquilegia oxysepala HOM05D000498 ORTHO05D000354 2.8e-07 58.5 47 53.2
PGR090G0001 Punica granatum HOM05D000498 ORTHO05D000354 3.6e-07 58.2 50 56.0
Lsat_1_v5_gn_8_54660 Lactuca sativa HOM05D000498 ORTHO05D000354 6.2e-07 57.4 48 58.3
COL.COLO4_23394 Corchorus olitorius HOM05D000498 ORTHO05D000354 1.1e-06 56.6 50 54.0
Dinv19724 Davidia involucrata HOM05D000498 ORTHO05D000354 1.1e-06 56.6 50 50.0
Lj1C33T10 Lonicera japonica HOM05D000498 ORTHO05D000354 1.4e-06 56.2 50 54.0
CANSAT25G2484 Cannabis sativa HOM05D000498 ORTHO05D000354 1.8e-06 55.8 50 52.0
CANSAT25G2832 Cannabis sativa HOM05D000498 ORTHO05D000354 1.8e-06 55.8 50 52.0
Thecc.01G295600 Theobroma cacao HOM05D000498 ORTHO05D000354 1.8e-06 55.8 50 54.0
CDE08G0650 Ceratophyllum demersum HOM05D000498 ORTHO05D000354 2.4e-06 55.5 50 48.0
Dinv19726 Davidia involucrata HOM05D000498 ORTHO05D000354 2.4e-06 55.5 50 50.0
Prupe.8G256900 Prunus persica HOM05D000498 ORTHO05D000354 2.4e-06 55.5 50 52.0
TAR567G0001 Trochodendron aralioides HOM05D000498 ORTHO05D000354 2.4e-06 55.5 50 50.0
TAR633G0857 Trochodendron aralioides HOM05D000498 ORTHO05D000354 2.4e-06 55.5 50 50.0
vmacro02475 Vaccinium macrocarpon HOM05D000498 ORTHO05D000354 2.4e-06 55.5 50 50.0
Eucgr.H01166 Eucalyptus grandis HOM05D000498 ORTHO05D000354 3.1e-06 55.1 48 50.0
Actinidia24326 Actinidia chinensis HOM05D000498 ORTHO05D000354 5.2e-06 54.3 50 52.0
Actinidia32235 Actinidia chinensis HOM05D000498 ORTHO05D000354 5.2e-06 54.3 50 54.0
Eucgr.H01169 Eucalyptus grandis HOM05D000498 ORTHO05D000354 5.2e-06 54.3 48 54.2
PGR090G0003 Punica granatum HOM05D000498 ORTHO05D000354 5.2e-06 54.3 50 54.0
PGR119G0883 Punica granatum HOM05D000498 ORTHO05D000354 5.2e-06 54.3 50 54.0
TWI59G1379 Tripterygium wilfordii HOM05D000498 ORTHO05D000354 5.2e-06 54.3 50 48.0
Aqoxy3G02475 Aquilegia oxysepala HOM05D000498 ORTHO05D000354 6.9e-06 53.9 48 45.8
CiPaw.08G097900 Carya illinoinensis HOM05D000498 ORTHO05D000354 6.9e-06 53.9 50 54.0
Gohir.A12G010100 Gossypium hirsutum HOM05D000498 ORTHO05D000354 6.9e-06 53.9 50 54.0
MBI19_g18873_MAGBIO Magnolia biondii HOM05D000498 ORTHO05D000354 6.9e-06 53.9 50 52.0
Nitab4.5_0011583g0010 Nicotiana tabacum HOM05D000498 ORTHO05D000354 6.9e-06 53.9 46 56.5
CSS0044356 Camellia sinensis var. sinensis HOM05D000498 ORTHO05D000354 9.0e-06 53.5 50 52.0
CANSAT25G1533 Cannabis sativa HOM05D000498 ORTHO05D000354 9.0e-06 53.5 46 54.3
Medtr1g088845 Medicago truncatula HOM05D000498 ORTHO05D000354 9.0e-06 53.5 50 52.0
PGR119G1473 Punica granatum HOM05D000498 ORTHO05D000354 9.0e-06 53.5 50 54.0


User provided reference genes

Program Settings