Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p026384 Quercus lobata HOM05D003631 ORTHO05D004219 1.8e-36 155.2 71 100.0
CiPaw.08G023400 Carya illinoinensis HOM05D003631 ORTHO05D004219 1.9e-17 92.0 60 73.3
Cfa013342 Carpinus fangiana HOM05D003631 ORTHO05D004219 2.5e-17 91.7 50 84.0
Gohir.D08G272400 Gossypium hirsutum HOM05D003631 ORTHO05D004219 2.5e-17 91.7 50 80.0
Thecc.09G039600 Theobroma cacao HOM05D003631 ORTHO05D004219 2.5e-17 91.7 50 80.0
RcHm_v2.0_Chr6g0305731 Rosa chinensis HOM05D003631 ORTHO05D004219 3.3e-17 91.3 55 74.5
TWI34G0985 Tripterygium wilfordii HOM05D003631 ORTHO05D004219 3.3e-17 91.3 50 80.0
Ah.16g105220 Amaranthus hybridus HOM05D003631 ORTHO05D004219 4.3e-17 90.9 56 73.2
Potri.018G037100 Populus trichocarpa HOM05D003631 ORTHO05D004219 4.3e-17 90.9 51 80.4
Hund03439 Selenicereus undatus HOM05D003631 ORTHO05D004219 4.3e-17 90.9 49 79.6
Actinidia15729 Actinidia chinensis HOM05D003631 ORTHO05D004219 5.6e-17 90.5 49 77.6
Rhsim07G0153300 Rhododendron simsii HOM05D003631 ORTHO05D004219 5.6e-17 90.5 51 74.5
TWI63G0861 Tripterygium wilfordii HOM05D003631 ORTHO05D004219 5.6e-17 90.5 50 78.0
Gorai.004G290800 Gossypium raimondii HOM05D003631 ORTHO05D004219 7.3e-17 90.1 50 78.0
COL.COLO4_18699 Corchorus olitorius HOM05D003631 ORTHO05D004219 9.5e-17 89.7 50 80.0
TAR636G2591 Trochodendron aralioides HOM05D003631 ORTHO05D004219 9.5e-17 89.7 52 76.9
CiPaw.07G207400 Carya illinoinensis HOM05D003631 ORTHO05D004219 1.2e-16 89.4 50 82.0
Dinv36643 Davidia involucrata HOM05D003631 ORTHO05D004219 1.2e-16 89.4 52 76.9
Ciclev10009440m.g Citrus clementina HOM05D003631 ORTHO05D004219 1.6e-16 89.0 51 76.5
Duzib150G0491 Durio zibethinus HOM05D003631 ORTHO05D004219 1.6e-16 89.0 50 76.0
Eucgr.C03819 Eucalyptus grandis HOM05D003631 ORTHO05D004219 1.6e-16 89.0 55 69.1
FvH4_2g36140 Fragaria vesca HOM05D003631 ORTHO05D004219 2.1e-16 88.6 50 80.0
FAN27G1133 Fragaria x ananassa HOM05D003631 ORTHO05D004219 2.1e-16 88.6 50 80.0
Cc06_g09780 Coffea canephora HOM05D003631 ORTHO05D004219 3.6e-16 87.8 46 80.4
Gohir.A08G250900 Gossypium hirsutum HOM05D003631 ORTHO05D004219 3.6e-16 87.8 50 76.0
Hma1.2p1_1151F.1_g262060 Hydrangea macrophylla HOM05D003631 ORTHO05D004219 3.6e-16 87.8 54 70.4
FAN15G1152 Fragaria x ananassa HOM05D003631 ORTHO05D004219 4.7e-16 87.4 50 78.0
FAN20G1208 Fragaria x ananassa HOM05D003631 ORTHO05D004219 4.7e-16 87.4 50 78.0
Lj7A652G70 Lonicera japonica HOM05D003631 ORTHO05D004219 6.2e-16 87.0 52 73.1
Nitab4.5_0001567g0050 Nicotiana tabacum HOM05D003631 ORTHO05D004219 6.2e-16 87.0 58 65.5
EL10Ac2g04076 Beta vulgaris HOM05D003631 ORTHO05D004219 8.1e-16 86.7 60 65.0
Lsat_1_v5_gn_1_49860 Lactuca sativa HOM05D003631 ORTHO05D004219 8.1e-16 86.7 49 73.5
TPR.G32527 Trifolium pratense HOM05D003631 ORTHO05D004219 1.1e-15 86.3 50 74.0
TAR624G0826 Trochodendron aralioides HOM05D003631 ORTHO05D004219 1.1e-15 86.3 44 86.4
AUR62023018 Chenopodium quinoa HOM05D003631 ORTHO05D004219 1.4e-15 85.9 56 71.4
Manes.03G062700 Manihot esculenta HOM05D003631 ORTHO05D004219 1.8e-15 85.5 56 73.2
Ciclev10009403m.g Citrus clementina HOM05D003631 ORTHO05D004219 2.3e-15 85.1 53 69.8
Oeu014652.1 Olea europaea HOM05D003631 ORTHO05D004219 2.3e-15 85.1 50 76.0
Oeu014653.1 Olea europaea HOM05D003631 ORTHO05D004219 2.3e-15 85.1 50 76.0
VMungo0647G2237 Vigna mungo HOM05D003631 ORTHO05D004219 2.3e-15 85.1 44 84.1
Sc09g0009080 Simmondsia chinensis HOM05D003631 ORTHO05D004219 3.1e-15 84.7 47 76.6
SGA_v2.0_scaffold280G46826 Striga asiatica HOM05D003631 ORTHO05D004219 3.1e-15 84.7 44 84.1
GSVIVG01035673001 Vitis vinifera HOM05D003631 ORTHO05D004219 3.1e-15 84.7 49 73.5
Glyma.14G141500 Glycine max HOM05D003631 ORTHO05D004219 4.0e-15 84.3 46 78.3
Phvul.001G078701 Phaseolus vulgaris HOM05D003631 ORTHO05D004219 4.0e-15 84.3 44 81.8
Sabra18G0037900 Salix brachista HOM05D003631 ORTHO05D004219 4.0e-15 84.3 50 72.0
SalBow1G6702 Salvia bowleyana HOM05D003631 ORTHO05D004219 4.0e-15 84.3 47 76.6
CAN.G309.79 Capsicum annuum HOM05D003631 ORTHO05D004219 6.8e-15 83.6 47 72.3
Solyc11g071330.3 Solanum lycopersicum HOM05D003631 ORTHO05D004219 6.8e-15 83.6 58 58.6
Sopen11g029010 Solanum pennellii HOM05D003631 ORTHO05D004219 6.8e-15 83.6 58 58.6
Nitab4.5_0000664g0300 Nicotiana tabacum HOM05D003631 ORTHO05D004219 8.9e-15 83.2 58 62.1
Prupe.7G232500 Prunus persica HOM05D003631 ORTHO05D004219 8.9e-15 83.2 49 71.4
PGSC0003DMG400018567 Solanum tuberosum HOM05D003631 ORTHO05D004219 8.9e-15 83.2 58 58.6
arahy.Tifrunner.gnm1.ann1.T1GT7D Arachis hypogaea HOM05D003631 ORTHO05D004219 1.2e-14 82.8 41 87.8
arahy.Tifrunner.gnm1.ann1.YQ2GF9 Arachis hypogaea HOM05D003631 ORTHO05D004219 1.2e-14 82.8 41 87.8
Lj1g0005663 Lotus japonicus HOM05D003631 ORTHO05D004219 1.2e-14 82.8 46 78.3
Ca_12813_v3 Cicer arietinum L. HOM05D003631 ORTHO05D004219 1.5e-14 82.4 46 78.3
Medtr1g008350 Medicago truncatula HOM05D003631 ORTHO05D004219 1.5e-14 82.4 46 76.1
SalBow4G1124 Salvia bowleyana HOM05D003631 ORTHO05D004219 1.5e-14 82.4 65 56.9
MSTRG.14009 Avicennia marina HOM05D003631 ORTHO05D004219 2.0e-14 82.0 45 77.8
Sed0024476 Sechium edule HOM05D003631 ORTHO05D004219 2.0e-14 82.0 48 70.8
unitig_578.g16597 Utricularia gibba HOM05D003631 ORTHO05D004219 2.0e-14 82.0 72 54.2
MSTRG.1652 Avicennia marina HOM05D003631 ORTHO05D004219 2.6e-14 81.6 44 77.3
CANSAT56G0429 Cannabis sativa HOM05D003631 ORTHO05D004219 2.6e-14 81.6 53 66.0
CANSAT56G1660 Cannabis sativa HOM05D003631 ORTHO05D004219 2.6e-14 81.6 53 66.0
COL.COLO4_34847 Corchorus olitorius HOM05D003631 ORTHO05D004219 2.6e-14 81.6 53 66.0
Migut.E01509 Erythranthe guttata HOM05D003631 ORTHO05D004219 2.6e-14 81.6 44 79.5
FAN26G2044 Fragaria x ananassa HOM05D003631 ORTHO05D004219 2.6e-14 81.6 49 67.3
FAN28G0644 Fragaria x ananassa HOM05D003631 ORTHO05D004219 2.6e-14 81.6 55 61.8
Lj7A707G38 Lonicera japonica HOM05D003631 ORTHO05D004219 2.6e-14 81.6 46 78.3
MD15G1098000 Malus domestica HOM05D003631 ORTHO05D004219 2.6e-14 81.6 50 70.0
Phvul.010G165700 Phaseolus vulgaris HOM05D003631 ORTHO05D004219 2.6e-14 81.6 60 58.3
RcHm_v2.0_Chr2g0090261 Rosa chinensis HOM05D003631 ORTHO05D004219 2.6e-14 81.6 55 61.8
Aa31sc29G40 Aethionema arabicum HOM05D003631 ORTHO05D004219 3.4e-14 81.3 56 62.5
arahy.Tifrunner.gnm1.ann1.05GVWZ Arachis hypogaea HOM05D003631 ORTHO05D004219 3.4e-14 81.3 49 69.4
arahy.Tifrunner.gnm1.ann1.AAYU95 Arachis hypogaea HOM05D003631 ORTHO05D004219 3.4e-14 81.3 49 69.4
FAN19G0016 Fragaria x ananassa HOM05D003631 ORTHO05D004219 3.4e-14 81.3 55 61.8
FAN23G2002 Fragaria x ananassa HOM05D003631 ORTHO05D004219 3.4e-14 81.3 55 61.8
Gohir.A06G063200 Gossypium hirsutum HOM05D003631 ORTHO05D004219 3.4e-14 81.3 48 66.7
Gohir.D06G061900 Gossypium hirsutum HOM05D003631 ORTHO05D004219 3.4e-14 81.3 48 66.7
Gorai.010G072100 Gossypium raimondii HOM05D003631 ORTHO05D004219 3.4e-14 81.3 48 66.7
VMungo0331G0778 Vigna mungo HOM05D003631 ORTHO05D004219 3.4e-14 81.3 63 55.6
FvH4_1g04560 Fragaria vesca HOM05D003631 ORTHO05D004219 4.4e-14 80.9 55 61.8
Prupe.1G452800 Prunus persica HOM05D003631 ORTHO05D004219 4.4e-14 80.9 44 81.8
HPP92_000527 Vanilla planifolia HOM05D003631 ORTHO05D004219 4.4e-14 80.9 48 70.8
Lsat_1_v5_gn_6_11000 Lactuca sativa HOM05D003631 ORTHO05D004219 5.8e-14 80.5 49 67.3
Oeu012180.1 Olea europaea HOM05D003631 ORTHO05D004219 5.8e-14 80.5 44 81.8
Potri.006G242700 Populus trichocarpa HOM05D003631 ORTHO05D004219 5.8e-14 80.5 50 72.0
THA.LOC104804593 Tarenaya hassleriana HOM05D003631 ORTHO05D004219 5.8e-14 80.5 46 73.9
Thecc.09G108900 Theobroma cacao HOM05D003631 ORTHO05D004219 5.8e-14 80.5 48 70.8
Cpa.g.sc23.96 Carica papaya HOM05D003631 ORTHO05D004219 7.5e-14 80.1 44 79.5
HanXRQChr01g0029581 Helianthus annuus HOM05D003631 ORTHO05D004219 7.5e-14 80.1 57 63.2
MD02G1045400 Malus domestica HOM05D003631 ORTHO05D004219 7.5e-14 80.1 46 69.6
Nn8g39151 Nelumbo nucifera HOM05D003631 ORTHO05D004219 7.5e-14 80.1 48 70.8
Psat6g034240 Pisum sativum HOM05D003631 ORTHO05D004219 7.5e-14 80.1 50 66.0
GSVIVG01015380001 Vitis vinifera HOM05D003631 ORTHO05D004219 7.5e-14 80.1 52 65.4
Duzib187G0575 Durio zibethinus HOM05D003631 ORTHO05D004219 9.9e-14 79.7 50 70.0
Glyma.13G074500 Glycine max HOM05D003631 ORTHO05D004219 9.9e-14 79.7 69 53.6
Nn2g11722 Nelumbo nucifera HOM05D003631 ORTHO05D004219 1.3e-13 79.3 48 66.7
THA.LOC104815150 Tarenaya hassleriana HOM05D003631 ORTHO05D004219 1.3e-13 79.3 44 75.0
ClCG11G002440 Citrullus lanatus HOM05D003631 ORTHO05D004219 1.7e-13 79.0 48 70.8
Duzib150G1599 Durio zibethinus HOM05D003631 ORTHO05D004219 1.7e-13 79.0 52 63.5
Eucgr.C02890 Eucalyptus grandis HOM05D003631 ORTHO05D004219 1.7e-13 79.0 46 71.7
MBI04_g29968_MAGBIO Magnolia biondii HOM05D003631 ORTHO05D004219 1.7e-13 79.0 48 68.8
Manes.16G114800 Manihot esculenta HOM05D003631 ORTHO05D004219 1.7e-13 79.0 61 59.0
Peaxi162Scf00231g00034 Petunia axillaris HOM05D003631 ORTHO05D004219 1.7e-13 79.0 57 61.4
Sabra18G0068700 Salix brachista HOM05D003631 ORTHO05D004219 1.7e-13 79.0 46 69.6
THA.LOC104821638 Tarenaya hassleriana HOM05D003631 ORTHO05D004219 1.7e-13 79.0 46 69.6
AT3G24570 Arabidopsis thaliana HOM05D003631 ORTHO05D004219 2.2e-13 78.6 46 71.7
Lalb_Chr11g0064321 Lupinus albus HOM05D003631 ORTHO05D004219 2.2e-13 78.6 41 80.5
PGR044G0672 Punica granatum HOM05D003631 ORTHO05D004219 2.2e-13 78.6 47 68.1
MBI01_g28041_MAGBIO Magnolia biondii HOM05D003631 ORTHO05D004219 2.9e-13 78.2 42 73.8
AL3G40110 Arabidopsis lyrata HOM05D003631 ORTHO05D004219 3.7e-13 77.8 44 75.0
BcaC01g03273 Brassica carinata HOM05D003631 ORTHO05D004219 3.7e-13 77.8 44 72.7
C03p54110 Brassica napus HOM05D003631 ORTHO05D004219 3.7e-13 77.8 44 72.7
Carub.0003s2496 Capsella rubella HOM05D003631 ORTHO05D004219 3.7e-13 77.8 44 75.0
CARHR100800 Cardamine hirsuta HOM05D003631 ORTHO05D004219 3.7e-13 77.8 44 75.0
DCAR_024691 Daucus carota HOM05D003631 ORTHO05D004219 3.7e-13 77.8 41 85.4
DCAR_031967 Daucus carota HOM05D003631 ORTHO05D004219 3.7e-13 77.8 41 85.4
PSO063G0959 Papaver somniferum HOM05D003631 ORTHO05D004219 4.9e-13 77.4 41 78.0
Sp3g22360 Schrenkiella parvula HOM05D003631 ORTHO05D004219 4.9e-13 77.4 56 62.5
BcaB06g26661 Brassica carinata HOM05D003631 ORTHO05D004219 6.4e-13 77.0 44 72.7
BcaC06g35727 Brassica carinata HOM05D003631 ORTHO05D004219 6.4e-13 77.0 44 72.7
A03p43790 Brassica napus HOM05D003631 ORTHO05D004219 6.4e-13 77.0 44 72.7
A07p07710 Brassica napus HOM05D003631 ORTHO05D004219 6.4e-13 77.0 44 72.7
C07p11590 Brassica napus HOM05D003631 ORTHO05D004219 6.4e-13 77.0 44 72.7
BraA03t13514Z Brassica rapa HOM05D003631 ORTHO05D004219 6.4e-13 77.0 44 72.7
BraA07t28564Z Brassica rapa HOM05D003631 ORTHO05D004219 6.4e-13 77.0 44 72.7
MELO3C004559.2 Cucumis melo HOM05D003631 ORTHO05D004219 6.4e-13 77.0 44 75.0
Thhalv10002655m.g Eutrema salsugineum HOM05D003631 ORTHO05D004219 6.4e-13 77.0 56 62.5
PSO210G6180 Papaver somniferum HOM05D003631 ORTHO05D004219 1.1e-12 76.3 49 67.3
ECA248G3192 Erigeron canadensis HOM05D003631 ORTHO05D004219 1.4e-12 75.9 47 63.8
PSO210G4261 Papaver somniferum HOM05D003631 ORTHO05D004219 1.4e-12 75.9 49 67.3
CsaV3_2G002230 Cucumis sativus L. HOM05D003631 ORTHO05D004219 1.9e-12 75.5 44 72.7
Glyma.05G230802 Glycine max HOM05D003631 ORTHO05D004219 1.9e-12 75.5 46 69.6
Rhsim03G0240900 Rhododendron simsii HOM05D003631 ORTHO05D004219 1.9e-12 75.5 51 62.7
Zm00001eb339190 Zea mays HOM05D003631 ORTHO05D004219 2.4e-12 75.1 48 62.5
HanXRQChr10g0313001 Helianthus annuus HOM05D003631 ORTHO05D004219 4.1e-12 74.3 46 67.4
Potri.018G081600 Populus trichocarpa HOM05D003631 ORTHO05D004219 4.1e-12 74.3 43 69.8
vmacro06223 Vaccinium macrocarpon HOM05D003631 ORTHO05D004219 4.1e-12 74.3 51 60.8
Ca_17334_v3 Cicer arietinum L. HOM05D003631 ORTHO05D004219 5.4e-12 73.9 47 63.8
HanXRQChr02g0048081 Helianthus annuus HOM05D003631 ORTHO05D004219 5.4e-12 73.9 49 61.2
PSO782G4304 Papaver somniferum HOM05D003631 ORTHO05D004219 5.4e-12 73.9 41 78.0
PSO832G3257 Papaver somniferum HOM05D003631 ORTHO05D004219 5.4e-12 73.9 41 78.0
TPR.G23442 Trifolium pratense HOM05D003631 ORTHO05D004219 5.4e-12 73.9 47 68.1
TPR.G24312 Trifolium pratense HOM05D000659 ORTHO05D000505 5.4e-12 73.9 47 68.1
Aqoxy7G01634 Aquilegia oxysepala HOM05D006435 ORTHO05D008262 7.1e-12 73.6 52 59.6
Lj4g0024734 Lotus japonicus HOM05D003631 ORTHO05D004219 7.1e-12 73.6 61 54.1
Sc08g0007510 Simmondsia chinensis HOM05D003631 ORTHO05D004219 1.6e-11 72.4 46 58.7
Dinv30253 Davidia involucrata HOM05D006435 ORTHO05D004219 2.7e-11 71.6 40 82.5
Aqoxy7G03847 Aquilegia oxysepala HOM05D003631 ORTHO05D004219 3.5e-11 71.2 44 63.6
Lalb_Chr09g0331201 Lupinus albus HOM05D003631 ORTHO05D004219 3.5e-11 71.2 53 56.6
SGA_v2.0_scaffold163G38087 Striga asiatica HOM05D003631 ORTHO05D004219 3.5e-11 71.2 44 68.2
Lalb_Chr05g0222891 Lupinus albus HOM05D003631 ORTHO05D004219 6.0e-11 70.5 51 58.8
Os01g0228300 Oryza sativa ssp. japonica HOM05D003631 ORTHO05D004219 6.0e-11 70.5 46 58.7
Gohir.A05G023800 Gossypium hirsutum HOM05D003631 ORTHO05D004219 7.8e-11 70.1 60 45.0
Gohir.D05G025300 Gossypium hirsutum HOM05D003631 ORTHO05D004219 7.8e-11 70.1 48 54.2
Gorai.009G025400 Gossypium raimondii HOM05D003631 ORTHO05D004219 7.8e-11 70.1 48 54.2
Psat7g013480 Pisum sativum HOM05D003631 ORTHO05D004219 5.1e-10 67.4 47 59.6
Medtr8g103490 Medicago truncatula HOM05D003631 ORTHO05D004219 1.1e-09 66.2 58 48.3
Glyma.08G038300 Glycine max HOM05D003631 ORTHO05D004219 2.5e-09 65.1 32 84.4
Dinv41613 Davidia involucrata HOM05D003631 ORTHO05D004219 9.5e-09 63.2 80 46.2
SEGI_07691 Sequoiadendron giganteum HOM05D003631 ORTHO05D004219 1.2e-08 62.8 44 56.8
BcaB03g14575 Brassica carinata HOM05D003631 ORTHO05D004219 1.1e-07 59.7 43 55.8
Mapoly0013s0132 Marchantia polymorpha HOM05D003631 ORTHO05D004219 3.1e-07 58.2 44 50.0
CSS0042874 Camellia sinensis var. sinensis HOM05D003631 ORTHO05D004219 1.5e-06 55.8 24 95.8
SMO301G0049 Selaginella moellendorffii HOM05D003631 ORTHO05D004219 1.5e-06 55.8 50 44.0
Ciclev10010528m.g Citrus clementina HOM05D003631 ORTHO05D004219 2.6e-06 55.1 66 40.9
TPR.G23483 Trifolium pratense HOM05D000002 ORTHO05D006339 2.6e-06 55.1 38 65.8


User provided reference genes

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