Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p026142 Quercus lobata HOM05D003277 ORTHO05D003275 3.4e-58 228.0 107 100.0
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 3.1e-19 98.6 110 53.6
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 1.2e-18 96.7 118 55.1
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.4e-16 89.7 114 50.0
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 3.2e-16 88.6 114 45.6
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 3.2e-16 88.6 114 45.6
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 5.5e-16 87.8 101 54.5
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 7.9e-15 84.0 109 49.5
Eucgr.C02884 Eucalyptus grandis HOM05D003277 ORTHO05D003275 2.3e-14 82.4 99 48.5
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 5.1e-14 81.3 112 47.3
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 5.1e-14 81.3 114 46.5
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 6.7e-14 80.9 108 48.1
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 3.3e-13 78.6 115 44.3
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.3e-13 78.6 112 46.4
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 5.6e-13 77.8 107 43.9
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 5.6e-13 77.8 112 46.4
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 5.6e-13 77.8 112 46.4
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 9.6e-13 77.0 65 61.5
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.3e-12 76.6 101 47.5
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 2.1e-12 75.9 115 43.5
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 3.7e-12 75.1 100 47.0
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 3.7e-12 75.1 109 45.9
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 4.8e-12 74.7 103 47.6
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 4.8e-12 74.7 97 44.3
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 6.2e-12 74.3 116 43.1
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.1e-11 73.6 103 46.6
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 1.1e-11 73.6 112 42.0
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.4e-11 73.2 103 46.6
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 1.4e-11 73.2 73 53.4
Ciclev10009982m.g Citrus clementina HOM05D003277 ORTHO05D003275 2.4e-11 72.4 106 45.3
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 2.4e-11 72.4 98 44.9
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 3.1e-11 72.0 109 44.0
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 4.0e-11 71.6 95 43.2
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 4.0e-11 71.6 105 43.8
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 5.3e-11 71.2 108 45.4
Oeu036629.1 Olea europaea HOM05D003277 ORTHO05D003275 5.3e-11 71.2 106 39.6
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 6.9e-11 70.9 109 43.1
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 6.9e-11 70.9 69 53.6
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 6.9e-11 70.9 103 41.7
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.2e-10 70.1 109 44.0
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 1.2e-10 70.1 109 37.6
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 1.2e-10 70.1 105 43.8
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 1.2e-10 70.1 99 46.5
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 1.2e-10 70.1 108 44.4
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 1.2e-10 70.1 117 41.0
ClCG11G013950 Citrullus lanatus HOM05D003277 ORTHO05D003275 1.5e-10 69.7 109 43.1
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 1.5e-10 69.7 113 41.6
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 1.5e-10 69.7 81 48.1
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 2.6e-10 68.9 113 41.6
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.6e-10 68.9 113 41.6
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.6e-10 68.9 113 41.6
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 3.4e-10 68.6 104 40.4
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 3.4e-10 68.6 88 48.9
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 5.8e-10 67.8 60 56.7
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 5.8e-10 67.8 97 46.4
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 7.6e-10 67.4 65 52.3
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 7.6e-10 67.4 100 42.0
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.0e-09 67.0 65 53.8
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 1.0e-09 67.0 100 41.0
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.7e-09 66.2 65 53.8
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.7e-09 66.2 68 50.0
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 2.2e-09 65.9 103 41.7
Migut.A00248 Erythranthe guttata HOM05D003277 ORTHO05D003275 2.9e-09 65.5 101 39.6
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.9e-09 65.5 63 57.1
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 2.9e-09 65.5 98 41.8
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 3.8e-09 65.1 98 41.8
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 3.8e-09 65.1 96 39.6
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 4.9e-09 64.7 63 52.4
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 6.5e-09 64.3 62 51.6
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 6.5e-09 64.3 66 53.0
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 8.4e-09 63.9 100 40.0
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 8.4e-09 63.9 71 49.3
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 1.4e-08 63.2 62 51.6
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 1.4e-08 63.2 59 54.2
Sed0006476 Sechium edule HOM05D003277 ORTHO05D003275 1.4e-08 63.2 110 43.6
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 1.9e-08 62.8 95 42.1
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 4.2e-08 61.6 63 52.4
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 4.2e-08 61.6 104 35.6
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 5.5e-08 61.2 72 45.8
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 5.5e-08 61.2 77 44.2
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 5.5e-08 61.2 103 37.9
THA.LOC104803771 Tarenaya hassleriana HOM05D012534 ORTHO05D003275 5.5e-08 61.2 90 42.2
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 7.1e-08 60.8 61 50.8
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 7.1e-08 60.8 68 50.0
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 7.1e-08 60.8 65 49.2
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 1.2e-07 60.1 60 51.7
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-07 60.1 64 50.0
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 1.2e-07 60.1 91 40.7
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.6e-07 59.7 64 50.0
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 2.1e-07 59.3 70 45.7
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 2.1e-07 59.3 62 50.0
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 2.1e-07 59.3 111 36.9
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 2.1e-07 59.3 64 50.0
CARHR115510 Cardamine hirsuta HOM05D012534 ORTHO05D003275 2.7e-07 58.9 96 45.8
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 2.7e-07 58.9 84 42.9
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 3.5e-07 58.5 69 46.4
Hma1.2p1_0018F.1_g013430 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 3.5e-07 58.5 99 41.4
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.6e-07 58.2 62 50.0
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 4.6e-07 58.2 67 50.7
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 4.6e-07 58.2 63 50.8
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 6.0e-07 57.8 90 41.1
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 6.0e-07 57.8 68 45.6
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 6.0e-07 57.8 68 45.6
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 6.0e-07 57.8 88 42.0
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 7.9e-07 57.4 65 47.7
SGA_v2.0_scaffold27G11531 Striga asiatica HOM05D003277 ORTHO05D003275 7.9e-07 57.4 93 38.7
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 7.9e-07 57.4 83 41.0
ATR1120G074 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.0e-06 57.0 38 71.1
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.0e-06 57.0 77 45.5
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 1.0e-06 57.0 79 44.3
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 1.3e-06 56.6 102 39.2
AT2G25735 Arabidopsis thaliana HOM05D012534 ORTHO05D003275 1.8e-06 56.2 98 43.9
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 1.8e-06 56.2 80 43.8
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 2.3e-06 55.8 71 45.1
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 2.3e-06 55.8 66 47.0
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.0e-06 55.5 56 51.8
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 3.0e-06 55.5 66 50.0
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 3.0e-06 55.5 61 52.5
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 3.0e-06 55.5 64 48.4
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 3.9e-06 55.1 68 41.2
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.9e-06 55.1 85 41.2
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 3.9e-06 55.1 85 41.2
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 3.9e-06 55.1 94 33.0
Ciclev10010574m.g Citrus clementina HOM05D003277 ORTHO05D003275 5.1e-06 54.7 70 45.7
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 5.1e-06 54.7 71 43.7
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 5.1e-06 54.7 85 41.2
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 5.1e-06 54.7 85 37.6
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 6.7e-06 54.3 107 35.5
DCAR_021143 Daucus carota HOM05D003277 ORTHO05D003275 6.7e-06 54.3 113 32.7
Thhalv10000375m.g Eutrema salsugineum HOM05D012534 ORTHO05D003275 6.7e-06 54.3 102 40.2
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 6.7e-06 54.3 67 44.8
Solyc12g007040.3 Solanum lycopersicum HOM05D003277 ORTHO05D003275 6.7e-06 54.3 66 47.0
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 6.7e-06 54.3 54 51.9
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 8.7e-06 53.9 59 45.8
PGSC0003DMG400000318 Solanum tuberosum HOM05D003277 ORTHO05D003275 8.7e-06 53.9 110 37.3
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 8.7e-06 53.9 59 45.8


User provided reference genes

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