Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p025722 Quercus lobata HOM05D003201 ORTHO05D008914 6.1e-160 567.4 278 100.0
CiPaw.07G210300 Carya illinoinensis HOM05D003201 ORTHO05D008914 5.6e-129 464.5 278 82.0
CSS0009288 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 8.1e-120 434.1 279 76.3
CSS0050223 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 1.1e-119 433.7 279 76.3
ClCG08G012570 Citrullus lanatus HOM05D003201 ORTHO05D008914 1.2e-115 420.2 279 74.2
Manes.02G219100 Manihot esculenta HOM05D003201 ORTHO05D008914 7.8e-115 417.5 278 73.0
MELO3C011176.2 Cucumis melo HOM05D003201 ORTHO05D008914 2.3e-114 416.0 278 72.7
MD15G1105100 Malus domestica HOM05D003201 ORTHO05D008914 8.6e-114 414.1 278 73.0
Prupe.1G456900 Prunus persica HOM05D003201 ORTHO05D008914 1.1e-113 413.7 277 74.4
Thecc.03G318200 Theobroma cacao HOM05D003201 ORTHO05D008914 4.3e-113 411.8 277 72.9
Duzib084G1420 Durio zibethinus HOM05D003201 ORTHO05D008914 7.3e-113 411.0 284 72.2
Gohir.D12G205000 Gossypium hirsutum HOM05D003201 ORTHO05D008914 3.6e-112 408.7 276 71.0
Actinidia29333 Actinidia chinensis HOM05D003201 ORTHO05D008914 4.7e-112 408.3 280 70.7
CsaV3_2G031270 Cucumis sativus L. HOM05D003201 ORTHO05D008914 1.1e-111 407.1 282 70.6
Gohir.A12G202300 Gossypium hirsutum HOM05D003201 ORTHO05D008914 2.4e-111 406.0 276 70.3
RcHm_v2.0_Chr6g0305311 Rosa chinensis HOM05D003201 ORTHO05D008914 4.4e-110 401.7 275 69.5
GSVIVG01035604001 Vitis vinifera HOM05D003201 ORTHO05D008914 5.8e-110 401.4 277 70.4
Cpa.g.sc30.52 Carica papaya HOM05D003201 ORTHO05D008914 2.9e-109 399.1 276 67.0
Gorai.008G219900 Gossypium raimondii HOM05D003201 ORTHO05D008914 3.8e-109 398.7 277 70.0
Ciclev10016172m.g Citrus clementina HOM05D003201 ORTHO05D008914 1.9e-108 396.4 277 70.4
FvH4_2g36540 Fragaria vesca HOM05D003201 ORTHO05D008914 3.2e-108 395.6 280 69.3
CANSAT54G1971 Cannabis sativa HOM05D003201 ORTHO05D008914 2.7e-107 392.5 279 68.8
Dinv37468 Davidia involucrata HOM05D003201 ORTHO05D008914 1.3e-106 390.2 231 78.8
Aqoxy7G00979 Aquilegia oxysepala HOM05D003201 ORTHO05D008914 5.6e-105 384.8 285 66.7
Peaxi162Scf00314g00636 Petunia axillaris HOM05D003201 ORTHO05D008914 1.2e-104 383.6 279 67.0
FAN15G0760 Fragaria x ananassa HOM05D003201 ORTHO05D008914 3.6e-104 382.1 280 67.1
Nitab4.5_0000391g0210 Nicotiana tabacum HOM05D003201 ORTHO05D008914 8.1e-104 380.9 277 66.8
Glyma.06G078200 Glycine max HOM05D003201 ORTHO05D008914 3.1e-103 379.0 280 65.4
CAN.G964.23 Capsicum annuum HOM05D003201 ORTHO05D008914 1.5e-102 376.7 276 65.2
Nitab4.5_0012553g0020 Nicotiana tabacum HOM05D003201 ORTHO05D008914 1.5e-102 376.7 277 65.3
DCAR_002183 Daucus carota HOM05D003201 ORTHO05D008914 2.6e-102 375.9 278 67.3
Eucgr.E04307 Eucalyptus grandis HOM05D003201 ORTHO05D008914 1.3e-101 373.6 275 66.5
TPR.G12401 Trifolium pratense HOM05D003201 ORTHO05D008914 1.3e-101 373.6 280 65.4
Rhsim07G0174100 Rhododendron simsii HOM05D003201 ORTHO05D008914 2.2e-101 372.9 374 53.7
Solyc05g012940.4 Solanum lycopersicum HOM05D003201 ORTHO05D008914 8.4e-101 370.9 278 65.5
PGSC0003DMG402028340 Solanum tuberosum HOM05D003201 ORTHO05D008914 1.1e-100 370.5 278 64.7
Psat5g023760 Pisum sativum HOM05D003201 ORTHO05D008914 1.9e-100 369.8 283 63.6
SalBow8G4280 Salvia bowleyana HOM05D003201 ORTHO05D008914 1.9e-100 369.8 279 64.5
Hund03239 Selenicereus undatus HOM05D003201 ORTHO05D008914 7.1e-100 367.9 283 65.7
TWI18G0285 Tripterygium wilfordii HOM05D003201 ORTHO05D008914 4.6e-99 365.2 271 66.8
THA.LOC104811993 Tarenaya hassleriana HOM05D003201 ORTHO05D008914 7.8e-99 364.4 277 63.9
Sopen05g007740 Solanum pennellii HOM05D003201 ORTHO05D008914 1.3e-98 363.6 278 64.7
Glyma.04G077000 Glycine max HOM05D003201 ORTHO05D008914 3.0e-98 362.5 282 63.5
Lalb_Chr11g0064231 Lupinus albus HOM05D003201 ORTHO05D008914 2.5e-97 359.4 274 66.1
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 5.6e-97 358.2 277 68.2
SGA_v2.0_scaffold45G16974 Striga asiatica HOM05D003201 ORTHO05D008914 7.3e-97 357.8 280 60.7
Cc11_g12550 Coffea canephora HOM05D003201 ORTHO05D008914 1.3e-96 357.1 279 62.7
PGR042G2091 Punica granatum HOM05D003201 ORTHO05D008914 3.1e-95 352.4 279 63.1
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 1.5e-94 350.1 274 63.5
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 2.6e-94 349.4 276 62.3
Lj1g0010900 Lotus japonicus HOM05D003201 ORTHO05D008914 2.6e-94 349.4 281 61.9
PSO782G1293 Papaver somniferum HOM05D003201 ORTHO05D008914 3.4e-94 349.0 278 61.9
Thhalv10025951m.g Eutrema salsugineum HOM05D003201 ORTHO05D008914 1.7e-93 346.7 275 60.0
arahy.Tifrunner.gnm1.ann1.6BLG7S Arachis hypogaea HOM05D003201 ORTHO05D008914 4.9e-93 345.1 303 58.4
CARHR227150 Cardamine hirsuta HOM05D003201 ORTHO05D008914 4.9e-93 345.1 276 60.9
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 8.4e-93 344.4 272 61.0
Atru.BG.264.p Acer truncatum HOM05D003201 ORTHO05D008914 1.1e-92 344.0 268 65.3
HanXRQChr15g0468831 Helianthus annuus HOM05D003201 ORTHO05D008914 1.1e-92 344.0 279 61.6
AL7G33570 Arabidopsis lyrata HOM05D003201 ORTHO05D008914 1.9e-92 343.2 275 61.1
AT4G20325 Arabidopsis thaliana HOM05D003201 ORTHO05D008914 3.2e-92 342.4 275 60.0
arahy.Tifrunner.gnm1.ann1.N5J460 Arachis hypogaea HOM05D003201 ORTHO05D008914 3.2e-92 342.4 310 56.8
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 3.2e-92 342.4 272 61.0
BcaNung03501 Brassica carinata HOM05D003201 ORTHO05D008914 5.4e-92 341.7 275 60.4
C07p50860 Brassica napus HOM05D000936 ORTHO05D008914 5.4e-92 341.7 275 60.4
AUR62028026 Chenopodium quinoa HOM05D003201 ORTHO05D008914 5.4e-92 341.7 280 59.6
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 7.1e-92 341.3 274 59.1
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 9.3e-92 340.9 272 59.9
Carub.0007s2085 Capsella rubella HOM05D003201 ORTHO05D008914 1.6e-91 340.1 275 61.1
A03p52400 Brassica napus HOM05D000936 ORTHO05D008914 2.7e-91 339.3 275 60.4
BolC7t45584H Brassica oleracea HOM05D000936 ORTHO05D008914 4.6e-91 338.6 275 60.0
EL10Ac8g19259 Beta vulgaris HOM05D003201 ORTHO05D008914 6.0e-91 338.2 278 60.1
BcaC06g30651 Brassica carinata HOM05D003201 ORTHO05D008914 2.3e-90 336.3 275 60.0
Migut.E00069 Erythranthe guttata HOM05D003201 ORTHO05D008914 2.3e-90 336.3 279 59.5
BraA03t14319Z Brassica rapa HOM05D003201 ORTHO05D008914 5.1e-90 335.1 275 59.3
Sp7g18670 Schrenkiella parvula HOM05D003201 ORTHO05D008914 2.5e-89 332.8 275 59.6
Ca_15643_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 3.3e-89 332.4 266 60.2
FAN20G1097 Fragaria x ananassa HOM05D000163 ORTHO05D008914 5.6e-89 331.6 252 65.5
VMungo1309G0938 Vigna mungo HOM05D003201 ORTHO05D008914 6.2e-88 328.2 353 50.1
Lsat_1_v5_gn_5_73181 Lactuca sativa HOM05D003201 ORTHO05D008914 3.1e-87 325.9 261 62.5
Phvul.009G102800 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 4.0e-87 325.5 204 71.6
vmacro05085 Vaccinium macrocarpon HOM05D003201 ORTHO05D008914 1.0e-82 310.8 499 39.3
BcaNung03722 Brassica carinata HOM05D000936 ORTHO05D001411 5.1e-82 308.5 275 55.6
HPP92_024271 Vanilla planifolia HOM05D003201 ORTHO05D008914 1.9e-81 306.6 268 60.4
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 7.4e-81 304.7 318 55.3
ATR0686G110 Amborella trichopoda HOM05D003201 ORTHO05D008914 9.0e-79 297.7 245 58.8
Sc23g0004340 Simmondsia chinensis HOM05D003201 ORTHO05D008914 2.9e-77 292.7 209 66.5
SEGI_35572 Sequoiadendron giganteum HOM05D003201 ORTHO05D008914 7.9e-75 284.6 280 50.4
AUR62020698 Chenopodium quinoa HOM05D003201 ORTHO05D008914 1.8e-74 283.5 284 51.8
TAR636G2614 Trochodendron aralioides HOM05D003201 ORTHO05D008914 2.6e-70 269.6 156 78.8
Sed0017242 Sechium edule HOM05D003201 ORTHO05D008914 2.5e-65 253.1 184 69.0
FAN27G2114 Fragaria x ananassa HOM05D000163 ORTHO05D000219 5.3e-63 245.4 217 60.8
Potri.006G281101 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.1e-60 237.7 167 70.7
Mapoly0037s0034 Marchantia polymorpha HOM05D003201 ORTHO05D008914 2.0e-57 226.9 244 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2003 Anthoceros agrestis HOM05D003201 ORTHO05D008914 3.2e-52 209.5 177 52.0
Pp3c10_22770 Physcomitrium patens HOM05D003201 ORTHO05D008914 6.7e-50 201.8 270 41.1
unitig_32.g11042 Utricularia gibba HOM05D003201 ORTHO05D008914 8.8e-50 201.4 190 55.3
SMO115G0061 Selaginella moellendorffii HOM05D003201 ORTHO05D008914 1.3e-48 197.6 230 40.9
SHI31610 Sapria himalayana HOM05D003201 ORTHO05D008914 2.6e-46 189.9 110 73.6
MD08G1125300 Malus domestica HOM05D003201 ORTHO05D008914 4.8e-40 169.1 210 44.3
Nn7g38306 Nelumbo nucifera HOM05D003201 ORTHO05D008914 3.5e-38 162.9 102 70.6
Zm00001eb079750 Zea mays HOM05D003201 ORTHO05D008914 1.7e-37 160.6 187 45.5
COL.COLO4_10365 Corchorus olitorius HOM05D003201 ORTHO05D008914 2.8e-27 126.7 178 43.3
CDE05G1961 Ceratophyllum demersum HOM05D003201 ORTHO05D008914 3.6e-27 126.3 141 51.1
Hma1.2p1_1357F.1_g277905 Hydrangea macrophylla HOM05D003201 ORTHO05D008914 1.8e-26 124.0 70 72.9
Os04g0476400 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008914 1.1e-23 114.8 97 56.7
TPR.G12326 Trifolium pratense HOM05D003201 ORTHO05D008914 1.4e-23 114.4 72 73.6
CBR_g23989 Chara braunii HOM05D003201 ORTHO05D008914 8.0e-19 98.6 68 58.8
PRCOL_00004174 Prasinoderma coloniale HOM05D003201 ORTHO05D008914 5.8e-17 92.4 197 32.5
CBR_g23991 Chara braunii HOM05D003201 ORTHO05D008914 8.6e-13 78.6 46 67.4
Cre07.g320800 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008914 1.2e-11 74.7 326 22.1
Phvul.009G102700 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 5.8e-09 65.9 280 26.1


User provided reference genes

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