Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 5.6e-65 250.8 124 100.0
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.4e-36 156.4 117 67.5
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.1e-34 147.9 126 65.9
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 2.2e-32 142.5 110 67.3
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 2.6e-30 135.6 116 57.8
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 7.7e-30 134.0 111 61.3
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.3e-29 133.3 124 60.5
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.3e-29 133.3 124 60.5
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 2.9e-29 132.1 122 57.4
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 5.0e-29 131.3 116 58.6
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 6.5e-29 131.0 126 60.3
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 8.5e-29 130.6 119 54.6
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 3.2e-28 128.6 125 60.8
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 3.2e-28 128.6 125 60.8
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 3.2e-28 128.6 122 55.7
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 4.2e-28 128.3 126 55.6
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 9.4e-28 127.1 120 55.8
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 9.4e-28 127.1 122 53.3
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.2e-27 126.7 123 53.7
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.1e-27 125.9 118 54.2
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.7e-27 125.6 118 54.2
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.6e-27 125.2 123 55.3
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 4.7e-27 124.8 117 53.0
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 4.7e-27 124.8 120 52.5
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 8.0e-27 124.0 113 53.1
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 1.0e-26 123.6 112 63.4
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 1.4e-26 123.2 121 52.9
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.3e-26 122.5 113 61.9
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 2.3e-26 122.5 116 60.3
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 3.0e-26 122.1 122 56.6
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 3.0e-26 122.1 126 53.2
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 4.0e-26 121.7 114 52.6
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 4.0e-26 121.7 114 51.8
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.0e-26 121.7 127 54.3
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 6.7e-26 120.9 121 55.4
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 6.7e-26 120.9 128 54.7
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 6.7e-26 120.9 117 51.3
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 6.7e-26 120.9 117 51.3
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.5e-25 119.8 112 62.5
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.5e-25 119.8 112 62.5
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.5e-25 119.8 117 57.3
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.0e-25 119.4 125 52.8
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.3e-25 118.6 121 51.2
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.3e-25 118.6 120 57.5
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 7.5e-25 117.5 123 49.6
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 1.3e-24 116.7 110 56.4
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.3e-24 116.7 114 54.4
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.3e-24 116.7 129 53.5
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 1.3e-24 116.7 123 48.0
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.3e-24 116.7 121 51.2
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.3e-24 116.7 121 51.2
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 4.8e-24 114.8 135 49.6
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.3e-24 114.4 114 50.0
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 8.2e-24 114.0 108 60.2
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 8.2e-24 114.0 114 49.1
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 1.1e-23 113.6 126 54.0
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.4e-23 113.2 121 50.4
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.4e-23 113.2 126 52.4
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 1.8e-23 112.8 119 51.3
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.4e-23 112.5 126 52.4
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 2.4e-23 112.5 121 48.8
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 3.1e-23 112.1 127 52.0
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.1e-23 111.7 121 50.4
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.3e-23 111.3 123 52.0
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.3e-23 111.3 123 52.0
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.3e-23 111.3 114 48.2
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 9.1e-23 110.5 121 49.6
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 9.1e-23 110.5 114 53.5
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 9.1e-23 110.5 116 56.9
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 9.1e-23 110.5 115 53.9
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 2.0e-22 109.4 122 54.9
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.5e-22 108.2 123 50.4
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 4.5e-22 108.2 121 56.2
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 5.9e-22 107.8 128 49.2
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 5.9e-22 107.8 131 50.4
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.7e-22 107.5 123 50.4
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 7.7e-22 107.5 122 49.2
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 7.7e-22 107.5 122 51.6
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.0e-21 107.1 121 52.9
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 2.9e-21 105.5 98 58.2
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 3.8e-21 105.1 112 52.7
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 8.5e-21 104.0 138 49.3
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 8.5e-21 104.0 110 62.7
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 8.5e-21 104.0 128 49.2
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.9e-20 102.8 117 53.0
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.5e-20 102.4 129 48.1
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 3.2e-20 102.1 117 53.0
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 4.2e-20 101.7 115 53.9
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 5.5e-20 101.3 121 50.4
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 7.2e-20 100.9 122 49.2
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 7.2e-20 100.9 124 46.0
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 9.4e-20 100.5 124 47.6
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 1.6e-19 99.8 128 43.8
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.6e-19 99.8 74 66.2
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 4.7e-19 98.2 119 49.6
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 4.7e-19 98.2 116 52.6
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.8e-18 96.3 116 54.3
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.8e-18 96.3 128 48.4
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 2.3e-18 95.9 137 46.0
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 4.0e-18 95.1 134 48.5
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 4.0e-18 95.1 115 47.8
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 4.4e-17 91.7 116 48.3
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 5.7e-17 91.3 102 49.0
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 7.5e-17 90.9 120 45.8
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 9.8e-17 90.5 112 46.4
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 2.2e-16 89.4 123 47.2
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 2.8e-16 89.0 128 48.4
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.8e-16 89.0 114 46.5
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.8e-16 89.0 114 46.5
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 3.7e-16 88.6 114 48.2
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 3.7e-16 88.6 119 45.4
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 3.7e-16 88.6 115 48.7
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 4.8e-16 88.2 115 47.8
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 6.3e-16 87.8 117 52.1
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 6.3e-16 87.8 121 43.8
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 8.3e-16 87.4 114 45.6
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.4e-15 86.7 119 46.2
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.4e-15 86.7 141 41.8
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.4e-15 86.7 115 47.0
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.8e-15 86.3 117 47.9
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.8e-15 86.3 119 46.2
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 2.4e-15 85.9 124 46.0
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 2.4e-15 85.9 134 43.3
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 4.1e-15 85.1 112 49.1
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 7.0e-15 84.3 119 47.1
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 9.1e-15 84.0 123 44.7
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 9.1e-15 84.0 136 39.7
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 1.6e-14 83.2 121 44.6
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 2.7e-14 82.4 114 44.7
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 2.7e-14 82.4 83 56.6
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 3.5e-14 82.0 110 47.3
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 3.5e-14 82.0 110 47.3
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 5.9e-14 81.3 126 43.7
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.0e-13 80.5 110 46.4
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.0e-13 80.5 110 46.4
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 1.0e-13 80.5 110 46.4
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.0e-13 80.5 138 37.0
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.7e-13 79.7 127 41.7
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.2e-13 79.3 121 41.3
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 2.9e-13 79.0 127 42.5
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.9e-13 79.0 97 50.5
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 1.1e-12 77.0 98 43.9
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.5e-12 76.6 123 43.9
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 1.5e-12 76.6 131 41.2
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.9e-12 76.3 83 56.6
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 2.5e-12 75.9 147 35.4
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.2e-12 75.1 97 51.5
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 5.5e-12 74.7 123 39.0
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 7.2e-12 74.3 118 41.5
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 7.2e-12 74.3 129 41.9
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 7.2e-12 74.3 129 42.6
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.2e-11 73.6 139 40.3
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 3.6e-11 72.0 117 43.6
Haze_21743 Corylus avellana HOM05D001798 ORTHO05D005040 4.7e-11 71.6 103 45.6
Cfa013272 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.0e-10 70.5 101 45.5
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 6.8e-10 67.8 106 37.7
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 6.8e-10 67.8 123 39.0
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 8.8e-10 67.4 80 48.8
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 8.8e-10 67.4 80 48.8
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 8.8e-10 67.4 147 37.4
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 8.8e-10 67.4 130 39.2
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.5e-09 66.6 97 46.4
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 2.6e-09 65.9 164 34.8
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 2.6e-09 65.9 105 39.0
PGR044G1765 Punica granatum HOM05D001798 ORTHO05D005040 4.4e-09 65.1 122 38.5
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 9.8e-09 63.9 98 44.9
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 9.8e-09 63.9 163 33.1
Glyma.06G076800 Glycine max HOM05D021496 ORTHO05D022761 8.3e-08 60.8 99 38.4
CsaV3_3G001020 Cucumis sativus L. HOM05D001798 ORTHO05D022392 1.1e-07 60.5 112 35.7
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 1.4e-07 60.1 92 41.3
Lalb_Chr08g0243531 Lupinus albus HOM05D021496 ORTHO05D022761 2.4e-07 59.3 101 36.6
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 9.2e-07 57.4 156 30.1
Phvul.009G101400 Phaseolus vulgaris HOM05D021496 ORTHO05D022761 1.6e-06 56.6 109 34.9


User provided reference genes

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