Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 1.3e-122 444.5 311 100.0
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 2.9e-87 327.0 311 80.7
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 5.2e-84 316.2 314 78.3
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 1.2e-64 251.9 261 81.2
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 2.7e-64 250.8 313 68.7
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 1.0e-63 248.8 313 66.5
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 3.0e-55 220.7 314 59.9
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 1.1e-54 218.8 307 63.8
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 1.1e-54 218.8 310 65.8
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 8.1e-53 212.6 311 61.7
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 1.1e-52 212.2 309 63.1
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 2.4e-52 211.1 302 64.2
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 3.1e-52 210.7 315 65.4
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 5.2e-52 209.9 309 63.1
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 6.8e-52 209.5 306 64.4
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 8.9e-52 209.1 309 62.8
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 4.4e-51 206.8 313 62.9
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 2.2e-50 204.5 313 62.9
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 3.9e-47 193.7 303 63.7
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 5.1e-47 193.4 314 61.1
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 1.1e-46 192.2 309 61.5
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 1.9e-46 191.4 308 62.0
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 5.6e-46 189.9 259 69.9
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 2.8e-45 187.6 289 63.3
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 4.8e-45 186.8 302 58.9
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 9.9e-43 179.1 303 61.4
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 6.4e-42 176.4 259 67.2
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 1.4e-41 175.3 306 60.8
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 1.2e-40 172.2 307 59.0
Sabra18G0010100 Salix brachista HOM05D000880 ORTHO05D009684 1.7e-39 168.3 313 58.1
Sabra18G0001200 Salix brachista HOM05D000880 ORTHO05D009684 5.1e-39 166.8 313 57.8
Potri.018G004400 Populus trichocarpa HOM05D000880 ORTHO05D009684 1.5e-38 165.2 313 57.5
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 1.9e-38 164.9 178 50.6
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 3.3e-38 164.1 236 70.3
Haze_10332 Corylus avellana HOM05D000880 ORTHO05D009684 7.3e-38 162.9 198 82.8
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 2.8e-37 161.0 314 45.2
PGR044G0315 Punica granatum HOM05D000880 ORTHO05D009684 2.8e-37 161.0 316 54.4
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 6.2e-37 159.8 317 51.1
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 3.1e-36 157.5 301 57.5
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 3.1e-36 157.5 298 59.1
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 1.7e-34 151.8 251 58.2
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 4.9e-34 150.2 252 65.5
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 1.1e-33 149.1 316 54.1
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 3.2e-33 147.5 288 58.7
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 4.2e-33 147.1 298 58.7
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 7.1e-33 146.4 246 65.9
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 2.7e-32 144.4 298 57.0
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 3.5e-32 144.1 292 51.7
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 1.3e-31 142.1 293 53.2
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 2.3e-31 141.4 299 60.9
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 7.4e-30 136.3 298 57.4
Thhalv10003880m.g Eutrema salsugineum HOM05D000880 ORTHO05D009684 1.3e-29 135.6 306 55.2
Lsat_1_v5_gn_5_33201 Lactuca sativa HOM05D000880 ORTHO05D009684 3.7e-29 134.0 168 43.5
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 6.2e-29 133.3 298 56.7
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 1.8e-28 131.7 319 53.0
GSVIVG01003996001 Vitis vinifera HOM05D000880 ORTHO05D009684 1.8e-28 131.7 200 74.0
Sp2g22620 Schrenkiella parvula HOM05D000880 ORTHO05D009684 2.4e-28 131.3 306 55.6
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 6.9e-28 129.8 323 48.9
C07p42940 Brassica napus HOM05D000880 ORTHO05D009684 9.0e-28 129.4 307 55.4
CARHR188620 Cardamine hirsuta HOM05D000880 ORTHO05D009684 1.2e-27 129.0 307 56.0
BolC7t44823H Brassica oleracea HOM05D000880 ORTHO05D009684 1.5e-27 128.6 307 55.4
A06p35600 Brassica napus HOM05D000880 ORTHO05D009684 3.4e-27 127.5 307 55.0
Carub.0006s2268 Capsella rubella HOM05D000880 ORTHO05D009684 4.5e-27 127.1 307 55.0
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 7.6e-27 126.3 290 58.3
MD15G1110300 Malus domestica HOM05D000880 ORTHO05D009684 1.7e-26 125.2 191 73.8
BraA06t26485Z Brassica rapa HOM05D000880 ORTHO05D009684 2.2e-26 124.8 307 54.7
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 4.9e-26 123.6 320 54.4
Peaxi162Scf00288g01016 Petunia axillaris HOM05D000880 ORTHO05D009684 4.9e-26 123.6 299 55.9
ECA232G0576 Erigeron canadensis HOM05D000880 ORTHO05D009684 6.5e-26 123.2 123 48.8
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 3.2e-25 120.9 255 59.6
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 1.6e-24 118.6 296 55.1
AT5G24830 Arabidopsis thaliana HOM05D000880 ORTHO05D009684 2.7e-24 117.9 304 54.6
AL6G36470 Arabidopsis lyrata HOM05D000880 ORTHO05D009684 4.6e-24 117.1 302 54.6
Nitab4.5_0001956g0020 Nicotiana tabacum HOM05D000880 ORTHO05D009684 6.0e-24 116.7 239 62.3
CiPaw.15G081300 Carya illinoinensis HOM05D000880 ORTHO05D009684 3.0e-23 114.4 78 69.2
HanXRQChr07g0202221 Helianthus annuus HOM05D000880 ORTHO05D009684 5.1e-23 113.6 148 45.3
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 5.7e-22 110.2 155 40.6
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 7.4e-22 109.8 116 48.3
CSS0003109 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 1.8e-20 105.1 96 53.1
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.4e-20 104.8 296 51.7
SGA_v2.0_scaffold121G33022 Striga asiatica HOM05D000880 ORTHO05D009684 3.1e-20 104.4 298 45.6
EL10Ac6g15284 Beta vulgaris HOM05D000880 ORTHO05D009684 4.0e-20 104.0 246 59.8
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 5.3e-20 103.6 172 40.1
ECA236G3570 Erigeron canadensis HOM05D000705 ORTHO05D002970 6.9e-20 103.2 85 60.0
Glyma.15G236000 Glycine max HOM05D000880 ORTHO05D009684 7.6e-19 99.8 201 57.2
MSTRG.13951 Avicennia marina HOM05D000880 ORTHO05D009684 1.0e-18 99.4 203 68.0
AUR62003593 Chenopodium quinoa HOM05D000880 ORTHO05D009684 2.9e-18 97.8 243 49.0
AUR62017906 Chenopodium quinoa HOM05D000880 ORTHO05D009684 3.8e-18 97.4 255 46.7
Ah.02g121750 Amaranthus hybridus HOM05D000880 ORTHO05D009684 5.0e-18 97.1 216 64.4
BcaNung01260 Brassica carinata HOM05D000880 ORTHO05D009684 3.5e-16 90.9 178 35.4
PSO017G1147 Papaver somniferum HOM05D000880 ORTHO05D001950 3.9e-15 87.4 149 36.2
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 1.5e-11 75.5 142 33.1
Cpa.g.sc10.208 Carica papaya HOM05D000880 ORTHO05D009684 8.5e-10 69.7 183 71.0
DCAR_017077 Daucus carota HOM05D000880 ORTHO05D009684 3.6e-08 64.3 46 60.9


User provided reference genes

Program Settings