Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p024465 Quercus lobata HOM05D007654 ORTHO05D009697 1.6e-39 165.6 82 100.0
CSS0025949 Camellia sinensis var. sinensis HOM05D007654 ORTHO05D009697 3.0e-30 134.8 82 74.4
Cfa005999 Carpinus fangiana HOM05D007654 ORTHO05D009697 4.3e-29 131.0 81 77.8
Manes.05G066600 Manihot esculenta HOM05D007654 ORTHO05D009697 2.1e-28 128.6 80 72.5
GSVIVG01010984001 Vitis vinifera HOM05D007654 ORTHO05D009697 2.8e-28 128.3 82 75.6
Atru.chr5.1253 Acer truncatum HOM05D007654 ORTHO05D009697 3.6e-28 127.9 82 75.6
TWI59G0903 Tripterygium wilfordii HOM05D007654 ORTHO05D009697 6.2e-28 127.1 82 76.8
Gohir.A12G009300 Gossypium hirsutum HOM05D007654 ORTHO05D009697 1.4e-27 125.9 82 73.2
Gohir.D12G009200 Gossypium hirsutum HOM05D007654 ORTHO05D009697 3.1e-27 124.8 82 73.2
CANSAT25G3801 Cannabis sativa HOM05D007654 ORTHO05D009697 5.3e-27 124.0 75 80.0
Gorai.008G009300 Gossypium raimondii HOM05D007654 ORTHO05D009697 6.9e-27 123.6 82 72.0
Manes.01G215200 Manihot esculenta HOM05D007654 ORTHO05D009697 9.0e-27 123.2 81 72.8
Duzib138G0105 Durio zibethinus HOM05D007654 ORTHO05D009697 1.2e-26 122.9 81 70.4
CiPaw.07G102300 Carya illinoinensis HOM05D007654 ORTHO05D009697 1.5e-26 122.5 80 73.8
Ciclev10023123m.g Citrus clementina HOM05D007654 ORTHO05D009697 2.0e-26 122.1 82 72.0
COL.COLO4_08007 Corchorus olitorius HOM05D000091 ORTHO05D003679 5.8e-26 120.6 82 69.5
Haze_04848 Corylus avellana HOM05D007654 ORTHO05D009697 5.8e-26 120.6 110 60.0
Dinv33011 Davidia involucrata HOM05D007654 ORTHO05D009697 7.6e-26 120.2 82 70.7
Lj1g0000519 Lotus japonicus HOM05D007654 ORTHO05D009697 9.9e-26 119.8 82 72.0
Nn3g21360 Nelumbo nucifera HOM05D007654 ORTHO05D009697 9.9e-26 119.8 78 73.1
Lsat_1_v5_gn_8_54301 Lactuca sativa HOM05D007654 ORTHO05D009697 1.3e-25 119.4 81 69.1
Phvul.001G203700 Phaseolus vulgaris HOM05D007654 ORTHO05D009697 1.3e-25 119.4 80 71.2
Prupe.8G254700 Prunus persica HOM05D007654 ORTHO05D009697 1.7e-25 119.0 75 76.0
Hma1.2p1_0209F.1_g088920 Hydrangea macrophylla HOM05D007654 ORTHO05D009697 2.2e-25 118.6 77 76.6
Lsat_1_v5_gn_9_47321 Lactuca sativa HOM05D007654 ORTHO05D009697 2.2e-25 118.6 81 69.1
HanXRQChr11g0350121 Helianthus annuus HOM05D007654 ORTHO05D009697 4.9e-25 117.5 80 71.2
Glyma.03G210600 Glycine max HOM05D007654 ORTHO05D009697 6.4e-25 117.1 81 69.1
Thecc.01G292900 Theobroma cacao HOM05D007654 ORTHO05D009697 6.4e-25 117.1 82 69.5
TPR.G9273 Trifolium pratense HOM05D007654 ORTHO05D009697 8.4e-25 116.7 82 70.7
Glyma.19G207800 Glycine max HOM05D007654 ORTHO05D009697 1.1e-24 116.3 81 66.7
Aa31LG10G16730 Aethionema arabicum HOM05D007654 ORTHO05D009697 4.2e-24 114.4 80 68.8
Cc01_g20410 Coffea canephora HOM05D007654 ORTHO05D009697 1.6e-23 112.5 82 65.9
TAR636G0595 Trochodendron aralioides HOM05D007654 ORTHO05D009697 1.6e-23 112.5 78 64.1
AL5G45700 Arabidopsis lyrata HOM05D007654 ORTHO05D009697 2.1e-23 112.1 80 66.2
arahy.Tifrunner.gnm1.ann1.4942C7 Arachis hypogaea HOM05D007654 ORTHO05D009697 2.1e-23 112.1 73 74.0
Carub.0005s2957 Capsella rubella HOM05D007654 ORTHO05D009697 2.1e-23 112.1 80 67.5
Potri.014G133600 Populus trichocarpa HOM05D007654 ORTHO05D009697 2.1e-23 112.1 82 63.4
Aqoxy2G03067 Aquilegia oxysepala HOM05D007654 ORTHO05D009697 2.7e-23 111.7 81 64.2
vmacro14977 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 3.5e-23 111.3 72 72.2
PGSC0003DMG400011382 Solanum tuberosum HOM05D007654 ORTHO05D009697 4.6e-23 110.9 80 65.0
C08p37630 Brassica napus HOM05D007654 ORTHO05D009697 7.9e-23 110.2 80 66.2
ClCG09G006300 Citrullus lanatus HOM05D007654 ORTHO05D009697 1.0e-22 109.8 79 64.6
Lalb_Chr15g0078691 Lupinus albus HOM05D007654 ORTHO05D009697 1.0e-22 109.8 71 74.6
AT3G62920 Arabidopsis thaliana HOM05D007654 ORTHO05D009697 1.3e-22 109.4 80 63.8
BraA09t40886Z Brassica rapa HOM05D007654 ORTHO05D009697 1.8e-22 109.0 78 66.7
MD11G1300800 Malus domestica HOM05D007654 ORTHO05D009697 1.8e-22 109.0 70 74.3
BolC8t51346H Brassica oleracea HOM05D007654 ORTHO05D009697 2.3e-22 108.6 80 65.0
Solyc09g074620.3 Solanum lycopersicum HOM05D007654 ORTHO05D009697 2.3e-22 108.6 80 63.8
Sopen09g029490 Solanum pennellii HOM05D007654 ORTHO05D009697 2.3e-22 108.6 80 63.8
MELO3C016052.2 Cucumis melo HOM05D007654 ORTHO05D009697 3.0e-22 108.2 75 69.3
Sed0025850 Sechium edule HOM05D007654 ORTHO05D009697 3.9e-22 107.8 77 67.5
Rhsim01G0281900 Rhododendron simsii HOM05D007654 ORTHO05D009697 5.1e-22 107.5 83 65.1
RcHm_v2.0_Chr6g0292931 Rosa chinensis HOM05D007654 ORTHO05D009697 5.1e-22 107.5 72 70.8
A09p54770 Brassica napus HOM05D007654 ORTHO05D009697 6.7e-22 107.1 78 65.4
Thhalv10006348m.g Eutrema salsugineum HOM05D007654 ORTHO05D009697 6.7e-22 107.1 80 63.8
FAN15G1923 Fragaria x ananassa HOM05D000091 ORTHO05D003679 6.7e-22 107.1 77 67.5
FAN27G0435 Fragaria x ananassa HOM05D000091 ORTHO05D003679 6.7e-22 107.1 77 68.8
CARHR173210 Cardamine hirsuta HOM05D007654 ORTHO05D009697 8.7e-22 106.7 80 62.5
CsaV3_7G028850 Cucumis sativus L. HOM05D007654 ORTHO05D009697 8.7e-22 106.7 75 68.0
Eucgr.H01198 Eucalyptus grandis HOM05D007654 ORTHO05D009697 8.7e-22 106.7 77 64.9
Medtr7g108290 Medicago truncatula HOM05D000091 ORTHO05D003679 8.7e-22 106.7 81 65.4
ECA236G4373 Erigeron canadensis HOM05D007654 ORTHO05D009697 1.1e-21 106.3 74 68.9
Nitab4.5_0002006g0110 Nicotiana tabacum HOM05D007654 ORTHO05D009697 1.5e-21 105.9 79 60.8
PSO170G3373 Papaver somniferum HOM05D007654 ORTHO05D009697 1.5e-21 105.9 80 63.8
Ca_09124_v3 Cicer arietinum L. HOM05D000091 ORTHO05D003679 5.6e-21 104.0 70 74.3
FAN24G2398 Fragaria x ananassa HOM05D000091 ORTHO05D003679 5.6e-21 104.0 77 67.5
MD03G1278400 Malus domestica HOM05D007654 ORTHO05D009697 1.6e-20 102.4 71 69.0
PGR119G1851 Punica granatum HOM05D007654 ORTHO05D009697 2.1e-20 102.1 72 66.7
unitig_0.g650 Utricularia gibba HOM05D007654 ORTHO05D009697 2.1e-20 102.1 82 63.4
Migut.D00166 Erythranthe guttata HOM05D007654 ORTHO05D009697 3.7e-20 101.3 80 63.8
Cpa.g.sc9.182 Carica papaya HOM05D007654 ORTHO05D009697 4.8e-20 100.9 65 78.5
Dinv19737 Davidia involucrata HOM05D007654 ORTHO05D009697 4.8e-20 100.9 55 89.1
SalBow3G4040 Salvia bowleyana HOM05D007654 ORTHO05D009697 6.2e-20 100.5 80 61.2
BcaB02g08089 Brassica carinata HOM05D007654 ORTHO05D009697 1.1e-19 99.8 78 60.3
Hund18071 Selenicereus undatus HOM05D007654 ORTHO05D009697 1.1e-19 99.8 74 60.8
arahy.Tifrunner.gnm1.ann1.3EGQ08 Arachis hypogaea HOM05D007654 ORTHO05D009697 2.4e-19 98.6 80 61.2
AUR62034665 Chenopodium quinoa HOM05D007654 ORTHO05D009697 4.0e-19 97.8 78 57.7
C04p30320 Brassica napus HOM05D007654 ORTHO05D009697 2.0e-18 95.5 68 66.2
BolC4t24565H Brassica oleracea HOM05D007654 ORTHO05D009697 2.0e-18 95.5 68 66.2
MBI18_g01968_MAGBIO Magnolia biondii HOM05D007654 ORTHO05D009697 4.5e-18 94.4 76 59.2
Oeu057570.1 Olea europaea HOM05D007654 ORTHO05D009697 7.6e-18 93.6 86 53.5
A04p00450 Brassica napus HOM05D007654 ORTHO05D009697 1.3e-17 92.8 80 57.5
BraA04t15764Z Brassica rapa HOM05D007654 ORTHO05D009697 1.3e-17 92.8 80 57.5
EL10Ac7g17424 Beta vulgaris HOM05D007654 ORTHO05D009697 1.7e-17 92.4 75 57.3
Sabra14G0099700 Salix brachista HOM05D000091 ORTHO05D003679 1.7e-17 92.4 64 67.2
Actinidia21074 Actinidia chinensis HOM05D007654 ORTHO05D009697 2.2e-17 92.0 53 77.4
FvH4_2g24970 Fragaria vesca HOM05D007654 ORTHO05D009697 6.5e-17 90.5 63 68.3
arahy.Tifrunner.gnm1.ann1.559R1C Arachis hypogaea HOM05D007654 ORTHO05D009697 1.9e-16 89.0 55 78.2
Eucgr.L03487 Eucalyptus grandis HOM05D007654 ORTHO05D009697 1.9e-16 89.0 81 58.0
Nitab4.5_0001102g0070 Nicotiana tabacum HOM05D007654 ORTHO05D009697 7.1e-16 87.0 59 69.5
Actinidia21070 Actinidia chinensis HOM05D007654 ORTHO05D009697 2.1e-15 85.5 50 82.0
FAN20G1580 Fragaria x ananassa HOM05D007654 ORTHO05D009697 1.8e-14 82.4 66 65.2
vmacro14982 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 1.9e-13 79.0 48 77.1
Zm00001eb365450 Zea mays HOM05D007654 ORTHO05D009697 1.9e-13 79.0 55 67.3
AUR62008575 Chenopodium quinoa HOM05D000096 ORTHO05D000045 3.3e-13 78.2 61 60.7
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 1.6e-12 75.9 61 57.4
Os05g0371500 Oryza sativa ssp. japonica HOM05D007654 ORTHO05D009697 8.2e-12 73.6 50 64.0
Lsat_1_v5_gn_0_9401 Lactuca sativa HOM05D007654 ORTHO05D009697 1.5e-10 69.3 57 57.9
SEGI_14019 Sequoiadendron giganteum HOM05D007654 ORTHO05D009697 1.7e-09 65.9 46 58.7
AagrBONN_evm.TU.Sc2ySwM_344.4968 Anthoceros agrestis HOM05D007654 ORTHO05D009697 2.5e-08 62.0 48 50.0
Mapoly0101s0010 Marchantia polymorpha HOM05D007654 ORTHO05D009697 7.1e-08 60.5 67 47.8


User provided reference genes

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