Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p024238 Quercus lobata HOM05D006618 ORTHO05D008291 1.2e-85 320.1 195 100.0
Cfa006056 Carpinus fangiana HOM05D006618 ORTHO05D008291 3.9e-52 208.8 195 63.6
CiPaw.08G099900 Carya illinoinensis HOM05D006618 ORTHO05D008291 8.6e-52 207.6 195 62.6
Haze_04795 Corylus avellana HOM05D006618 ORTHO05D008291 1.2e-50 203.8 236 55.5
Haze_04826 Corylus avellana HOM05D006618 ORTHO05D008291 1.6e-50 203.4 235 55.7
Manes.05G067500 Manihot esculenta HOM05D006618 ORTHO05D008291 2.0e-40 169.9 185 55.7
Hma1.2p1_0399F.1_g144140 Hydrangea macrophylla HOM05D006618 ORTHO05D008291 2.9e-39 166.0 198 52.5
Sed0009421 Sechium edule HOM05D006618 ORTHO05D008291 5.4e-38 161.8 159 56.6
Hund18083 Selenicereus undatus HOM05D006618 ORTHO05D008291 5.4e-38 161.8 196 53.1
Phvul.001G202800 Phaseolus vulgaris HOM05D006618 ORTHO05D008291 1.2e-37 160.6 156 59.6
MSTRG.18188 Avicennia marina HOM05D006618 ORTHO05D008291 1.6e-37 160.2 155 58.1
Glyma.19G206900 Glycine max HOM05D006618 ORTHO05D008291 2.7e-37 159.5 156 62.8
Potri.014G134700 Populus trichocarpa HOM05D006618 ORTHO05D008291 2.7e-37 159.5 198 52.0
Sed0008392 Sechium edule HOM05D006618 ORTHO05D008291 4.6e-37 158.7 152 56.6
Peaxi162Scf01039g00026 Petunia axillaris HOM05D006618 ORTHO05D008291 1.0e-36 157.5 153 55.6
Glyma.03G209500 Glycine max HOM05D006618 ORTHO05D008291 5.1e-36 155.2 156 59.0
VMungo1383G0445 Vigna mungo HOM05D006618 ORTHO05D008291 6.6e-36 154.8 155 60.6
FAN27G1167 Fragaria x ananassa HOM05D006618 ORTHO05D008291 8.6e-36 154.5 193 51.8
Lj1C37G5 Lonicera japonica HOM05D000143 ORTHO05D000072 1.5e-35 153.7 153 59.5
RcHm_v2.0_Chr6g0292701 Rosa chinensis HOM05D006618 ORTHO05D008291 1.5e-35 153.7 193 51.3
FvH4_2g24850 Fragaria vesca HOM05D006618 ORTHO05D008291 1.9e-35 153.3 193 50.8
FAN24G2031 Fragaria x ananassa HOM05D006618 ORTHO05D008291 1.9e-35 153.3 193 50.8
CSS0038517 Camellia sinensis var. sinensis HOM05D006618 ORTHO05D008291 2.5e-35 152.9 197 51.8
Gorai.007G131200 Gossypium raimondii HOM05D006618 ORTHO05D008291 2.5e-35 152.9 151 56.3
Nn3g21320 Nelumbo nucifera HOM05D006618 ORTHO05D008291 2.5e-35 152.9 153 59.5
MD11G1299100 Malus domestica HOM05D006618 ORTHO05D008291 5.6e-35 151.8 233 46.4
COL.COLO4_08018 Corchorus olitorius HOM05D006618 ORTHO05D008291 1.6e-34 150.2 154 58.4
PSO170G6580 Papaver somniferum HOM05D006618 ORTHO05D008291 2.1e-34 149.8 157 56.7
Dinv33000 Davidia involucrata HOM05D006618 ORTHO05D008291 2.8e-34 149.4 192 49.5
PSO210G2131 Papaver somniferum HOM05D006618 ORTHO05D008291 6.2e-34 148.3 157 56.7
vmacro02504 Vaccinium macrocarpon HOM05D006618 ORTHO05D008291 6.2e-34 148.3 206 47.1
MD03G1276600 Malus domestica HOM05D006618 ORTHO05D008291 8.1e-34 147.9 233 48.1
Prupe.8G253400 Prunus persica HOM05D006618 ORTHO05D008291 8.1e-34 147.9 226 46.5
Duzib211G0091 Durio zibethinus HOM05D006618 ORTHO05D008291 1.1e-33 147.5 154 55.8
FAN15G0256 Fragaria x ananassa HOM05D006618 ORTHO05D008291 1.8e-33 146.7 193 50.3
PGSC0003DMG400024043 Solanum tuberosum HOM05D006618 ORTHO05D008291 3.1e-33 146.0 153 54.9
Atru.chr5.1237 Acer truncatum HOM05D006618 ORTHO05D008291 4.0e-33 145.6 193 50.8
Solyc06g084500.3 Solanum lycopersicum HOM05D006618 ORTHO05D008291 4.0e-33 145.6 153 56.2
ClCG09G006430 Citrullus lanatus HOM05D006618 ORTHO05D008291 6.9e-33 144.8 198 47.5
Ah.08g212660 Amaranthus hybridus HOM05D006618 ORTHO05D008291 1.2e-32 144.1 154 55.2
Sopen06g035880 Solanum pennellii HOM05D006618 ORTHO05D008291 2.0e-32 143.3 153 54.9
Lsat_1_v5_gn_9_4841 Lactuca sativa HOM05D006618 ORTHO05D008291 4.4e-32 142.1 151 56.3
Medtr7g108100 Medicago truncatula HOM05D006618 ORTHO05D008291 4.4e-32 142.1 156 55.1
Sc17g0003540 Simmondsia chinensis HOM05D006618 ORTHO05D008291 4.4e-32 142.1 153 54.9
CsaV3_7G028720 Cucumis sativus L. HOM05D006618 ORTHO05D008291 1.7e-31 140.2 198 47.0
Nitab4.5_0012299g0010 Nicotiana tabacum HOM05D006618 ORTHO05D008291 2.2e-31 139.8 186 47.8
EL10Ac7g17390 Beta vulgaris HOM05D006618 ORTHO05D008291 6.4e-31 138.3 155 57.4
Aa31LG5G2680 Aethionema arabicum HOM05D006618 ORTHO05D008291 8.4e-31 137.9 195 47.2
Duzib138G1186 Durio zibethinus HOM05D006618 ORTHO05D008291 8.4e-31 137.9 193 46.1
Lj1g0015584 Lotus japonicus HOM05D006618 ORTHO05D008291 1.4e-30 137.1 190 47.9
THA.LOC104801197 Tarenaya hassleriana HOM05D006618 ORTHO05D008291 1.4e-30 137.1 196 46.9
Aqoxy5G00606 Aquilegia oxysepala HOM05D006618 ORTHO05D008291 1.9e-30 136.7 192 46.4
AUR62036645 Chenopodium quinoa HOM05D006618 ORTHO05D008291 3.2e-30 136.0 188 48.9
CAN.G1209.34 Capsicum annuum HOM05D006618 ORTHO05D008291 4.2e-30 135.6 160 51.9
Ciclev10022357m.g Citrus clementina HOM05D006618 ORTHO05D008291 9.3e-30 134.4 155 57.4
Gohir.A11G117500 Gossypium hirsutum HOM05D006618 ORTHO05D008291 3.5e-29 132.5 184 45.1
Ca_23188_v3 Cicer arietinum L. HOM05D006618 ORTHO05D008291 7.8e-29 131.3 156 53.2
Nitab4.5_0002093g0230 Nicotiana tabacum HOM05D006618 ORTHO05D008291 1.0e-28 131.0 186 45.7
TAR362G0318 Trochodendron aralioides HOM05D006618 ORTHO05D008291 2.3e-28 129.8 184 47.8
MELO3C015900.2 Cucumis melo HOM05D006618 ORTHO05D008291 3.0e-28 129.4 205 43.4
PGR119G1443 Punica granatum HOM05D006618 ORTHO05D008291 3.0e-28 129.4 204 44.1
Cc01_g20320 Coffea canephora HOM05D006618 ORTHO05D008291 3.9e-28 129.0 154 51.3
Oeu057561.4 Olea europaea HOM05D006618 ORTHO05D008008 3.9e-28 129.0 166 50.0
TWI12G0445 Tripterygium wilfordii HOM05D006618 ORTHO05D008291 8.7e-28 127.9 199 43.2
ECA247G1808 Erigeron canadensis HOM05D006618 ORTHO05D008291 1.1e-27 127.5 153 49.0
Psat3g024440 Pisum sativum HOM05D006618 ORTHO05D008291 2.5e-27 126.3 156 50.6
BcaC01g06702 Brassica carinata HOM05D006618 ORTHO05D008291 3.3e-27 125.9 158 48.7
SGA_v2.0_scaffold11G05756 Striga asiatica HOM05D006618 ORTHO05D008291 7.3e-27 124.8 182 46.2
AT4G03180 Arabidopsis thaliana HOM05D006618 ORTHO05D008291 1.3e-26 124.0 158 48.7
Lalb_Chr18g0047451 Lupinus albus HOM05D006618 ORTHO05D008291 1.3e-26 124.0 157 53.5
Sabra14G0100400 Salix brachista HOM05D006618 ORTHO05D008291 1.3e-26 124.0 198 44.4
C03p37140 Brassica napus HOM05D006618 ORTHO05D008291 1.6e-26 123.6 191 43.5
BolC3t16012H Brassica oleracea HOM05D006618 ORTHO05D008291 2.1e-26 123.2 160 47.5
Zm00001eb410530 Zea mays HOM05D006618 ORTHO05D008291 3.6e-26 122.5 148 55.4
AL6G49760 Arabidopsis lyrata HOM05D006618 ORTHO05D008291 8.1e-26 121.3 158 47.5
Carub.0006s3388 Capsella rubella HOM05D006618 ORTHO05D008291 1.1e-25 120.9 154 48.7
SalBow3G3170 Salvia bowleyana HOM05D006618 ORTHO05D008291 1.1e-25 120.9 157 47.8
Thhalv10028994m.g Eutrema salsugineum HOM05D006618 ORTHO05D008291 2.4e-25 119.8 194 43.3
Eucgr.H01207 Eucalyptus grandis HOM05D006618 ORTHO05D008291 3.1e-25 119.4 155 51.6
CARHR251610 Cardamine hirsuta HOM05D006618 ORTHO05D008291 2.6e-24 116.3 195 42.6
Sp6g03210 Schrenkiella parvula HOM05D006618 ORTHO05D008291 2.6e-24 116.3 156 46.8
TPR.G32314 Trifolium pratense HOM05D006618 ORTHO05D008291 2.6e-24 116.3 172 45.9
BcaB05g23692 Brassica carinata HOM05D006618 ORTHO05D008291 9.9e-24 114.4 195 41.5
AUR62034630 Chenopodium quinoa HOM05D006618 ORTHO05D008291 2.2e-23 113.2 194 42.3
Zm00001eb137700 Zea mays HOM05D006618 ORTHO05D008291 2.9e-23 112.8 144 50.7
Thecc.01G291700 Theobroma cacao HOM05D006618 ORTHO05D008291 3.8e-23 112.5 195 43.6
Os12g0538100 Oryza sativa ssp. japonica HOM05D006618 ORTHO05D008291 4.9e-23 112.1 153 47.7
Rhsim13G0016600 Rhododendron simsii HOM05D006618 ORTHO05D008291 6.4e-23 111.7 156 46.2
Migut.D00152 Erythranthe guttata HOM05D006618 ORTHO05D008291 8.4e-23 111.3 173 43.9
ATR0706G074 Amborella trichopoda HOM05D006618 ORTHO05D008291 1.1e-22 110.9 162 45.1
GSVIVG01010994001 Vitis vinifera HOM05D006618 ORTHO05D008291 2.4e-22 109.8 116 57.8
FAN20G2846 Fragaria x ananassa HOM05D006618 ORTHO05D008291 7.1e-22 108.2 171 45.6
HanXRQChr15g0466141 Helianthus annuus HOM05D006618 ORTHO05D008291 2.3e-20 103.2 153 44.4
arahy.Tifrunner.gnm1.ann1.1H6IZY Arachis hypogaea HOM05D006618 ORTHO05D008291 3.0e-20 102.8 149 51.0
BcaC03g16213 Brassica carinata HOM05D006618 ORTHO05D008291 1.1e-19 100.9 156 42.9
BolC2t10017H Brassica oleracea HOM05D006618 ORTHO05D008291 1.1e-19 100.9 156 42.9
Actinidia24851 Actinidia chinensis HOM05D006618 ORTHO05D008291 1.9e-19 100.1 116 53.4
MBI19_g13630_MAGBIO Magnolia biondii HOM05D006618 ORTHO05D008291 2.5e-19 99.8 157 43.9
unitig_22.g5246 Utricularia gibba HOM05D006618 ORTHO05D008291 4.3e-19 99.0 154 46.1
arahy.Tifrunner.gnm1.ann1.160DKY Arachis hypogaea HOM05D006618 ORTHO05D008291 5.6e-19 98.6 148 47.3
BcaB01g02511 Brassica carinata HOM05D006618 ORTHO05D008291 6.2e-18 95.1 158 41.1
Ca_09115_v3 Cicer arietinum L. HOM05D006618 ORTHO05D008291 2.4e-17 93.2 152 44.7
HPP92_017865 Vanilla planifolia HOM05D006618 ORTHO05D008291 4.0e-17 92.4 196 37.2
A02p25130 Brassica napus HOM05D006618 ORTHO05D008291 5.3e-17 92.0 157 42.0
Cfa006024 Carpinus fangiana HOM05D006618 ORTHO05D008291 2.0e-16 90.1 69 69.6
CANSAT25G1401 Cannabis sativa HOM05D006618 ORTHO05D008291 3.4e-16 89.4 195 44.1
BraA02t07501Z Brassica rapa HOM05D006618 ORTHO05D008291 9.9e-16 87.8 156 39.7
C02p39890 Brassica napus HOM05D006618 ORTHO05D008291 6.4e-15 85.1 156 39.1
arahy.Tifrunner.gnm1.ann1.MTA467 Arachis hypogaea HOM05D006618 ORTHO05D008291 3.2e-14 82.8 147 43.5
arahy.Tifrunner.gnm1.ann1.915FC2 Arachis hypogaea HOM05D006618 ORTHO05D008291 1.2e-13 80.9 147 43.5
Gohir.D11G122400 Gossypium hirsutum HOM05D006618 ORTHO05D008291 1.2e-13 80.9 128 41.4
Actinidia21075 Actinidia chinensis HOM05D006618 ORTHO05D008291 2.1e-13 80.1 64 67.2
Atru.chr5.1270 Acer truncatum HOM05D006618 ORTHO05D008291 4.6e-13 79.0 120 45.8
THA.LOC104827373 Tarenaya hassleriana HOM05D006618 ORTHO05D008291 7.9e-13 78.2 123 43.9
BcaB05g22921 Brassica carinata HOM05D001082 ORTHO05D008291 1.2e-08 64.3 135 36.3
SEGI_31360 Sequoiadendron giganteum HOM05D006618 ORTHO05D008291 3.8e-07 59.3 43 72.1
Mapoly0001s0215 Marchantia polymorpha HOM05D006618 ORTHO05D008291 3.2e-06 56.2 182 33.0
SHI15557 Sapria himalayana HOM05D006618 ORTHO05D008291 7.1e-06 55.1 54 57.4


User provided reference genes

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