Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p024146 Quercus lobata HOM05D000335 ORTHO05D001251 3.2e-50 201.4 100 100.0
QL02p004977 Quercus lobata HOM05D000335 ORTHO05D001251 3.4e-28 128.3 70 95.7
QL12p024089 Quercus lobata HOM05D000335 ORTHO05D001251 1.9e-18 95.9 67 76.1
QL05p017369 Quercus lobata HOM05D000335 ORTHO05D001251 9.6e-15 83.6 109 48.6
QL05p017700 Quercus lobata HOM05D000335 ORTHO05D001251 9.6e-15 83.6 109 48.6
QL12p024029 Quercus lobata HOM05D000335 ORTHO05D001251 9.6e-15 83.6 109 48.6
QL12p024152 Quercus lobata HOM05D000335 ORTHO05D001251 9.6e-15 83.6 109 48.6
QL12p024005 Quercus lobata HOM05D000335 ORTHO05D001251 2.8e-14 82.0 109 47.7
QL12p024130 Quercus lobata HOM05D000335 ORTHO05D001251 1.4e-13 79.7 109 46.8
MD00G1056000 Malus domestica HOM05D000335 ORTHO05D001251 2.9e-11 72.0 110 42.7
FvH4_2g24750 Fragaria vesca HOM05D000335 ORTHO05D001251 3.2e-10 68.6 112 42.0
FAN20G1061 Fragaria x ananassa HOM05D000335 ORTHO05D001251 3.2e-10 68.6 112 42.0
FAN24G2102 Fragaria x ananassa HOM05D000335 ORTHO05D001251 3.2e-10 68.6 112 42.0
FAN27G2391 Fragaria x ananassa HOM05D000335 ORTHO05D001251 3.2e-10 68.6 112 42.0
RcHm_v2.0_Chr6g0292571 Rosa chinensis HOM05D000335 ORTHO05D001251 3.2e-10 68.6 112 42.0
Cfa006034 Carpinus fangiana HOM05D000335 ORTHO05D001251 4.2e-10 68.2 109 42.2
Cc01_g20250 Coffea canephora HOM05D000335 ORTHO05D001251 4.2e-10 68.2 112 40.2
FAN15G1352 Fragaria x ananassa HOM05D000335 ORTHO05D001251 4.2e-10 68.2 112 42.0
Medtr7g107690 Medicago truncatula HOM05D000335 ORTHO05D001251 4.2e-10 68.2 110 40.0
COL.COLO4_08026 Corchorus olitorius HOM05D000335 ORTHO05D001251 5.5e-10 67.8 127 36.2
Dinv11300 Davidia involucrata HOM05D000335 ORTHO05D001251 7.1e-10 67.4 109 42.2
Duzib133G1384 Durio zibethinus HOM05D000335 ORTHO05D001251 9.3e-10 67.0 109 41.3
Prupe.8G252500 Prunus persica HOM05D000335 ORTHO05D001251 9.3e-10 67.0 113 41.6
RcHm_v2.0_Chr6g0271581 Rosa chinensis HOM05D000335 ORTHO05D001251 9.3e-10 67.0 112 41.1
Duzib138G0180 Durio zibethinus HOM05D000335 ORTHO05D001251 1.2e-09 66.6 109 40.4
Manes.01G213800 Manihot esculenta HOM05D000335 ORTHO05D001251 1.2e-09 66.6 109 41.3
Hma1.2p1_0399F.1_g144190 Hydrangea macrophylla HOM05D000335 ORTHO05D001251 1.6e-09 66.2 110 41.8
Sabra02G0149700 Salix brachista HOM05D000335 ORTHO05D001251 1.6e-09 66.2 109 40.4
Haze_04814 Corylus avellana HOM05D000335 ORTHO05D001251 2.1e-09 65.9 109 41.3
Potri.002G207400 Populus trichocarpa HOM05D000335 ORTHO05D001251 2.1e-09 65.9 109 41.3
TWI14G0567 Tripterygium wilfordii HOM05D000335 ORTHO05D001251 2.7e-09 65.5 109 41.3
TAR365G0046 Trochodendron aralioides HOM05D000335 ORTHO05D001251 2.7e-09 65.5 108 40.7
Thecc.01G290600 Theobroma cacao HOM05D000335 ORTHO05D001251 4.6e-09 64.7 109 40.4
TPR.G32275 Trifolium pratense HOM05D000335 ORTHO05D001251 4.6e-09 64.7 109 39.4
CAN.G426.24 Capsicum annuum HOM05D000335 ORTHO05D001251 6.0e-09 64.3 109 41.3
CiPaw.07G100200 Carya illinoinensis HOM05D000335 ORTHO05D001251 6.0e-09 64.3 109 39.4
COL.COLO4_08028 Corchorus olitorius HOM05D000335 ORTHO05D001251 6.0e-09 64.3 109 39.4
Dinv32995 Davidia involucrata HOM05D000335 ORTHO05D001251 6.0e-09 64.3 109 40.4
Lalb_Chr15g0078781 Lupinus albus HOM05D000335 ORTHO05D001251 6.0e-09 64.3 109 38.5
TAR633G2744 Trochodendron aralioides HOM05D000335 ORTHO05D001251 6.0e-09 64.3 109 39.4
Atru.chr5.1278 Acer truncatum HOM05D000335 ORTHO05D001251 1.0e-08 63.5 124 36.3
Atru.chr5.1279 Acer truncatum HOM05D000335 ORTHO05D001251 1.0e-08 63.5 109 38.5
Peaxi162Scf00067g00414 Petunia axillaris HOM05D000335 ORTHO05D001251 1.3e-08 63.2 109 38.5
Ca_09112_v3 Cicer arietinum L. HOM05D000335 ORTHO05D001251 1.8e-08 62.8 110 38.2
Migut.D00228 Erythranthe guttata HOM05D000335 ORTHO05D001251 1.8e-08 62.8 109 37.6
Gohir.A08G072200 Gossypium hirsutum HOM05D000335 ORTHO05D001251 1.8e-08 62.8 109 39.4
Gorai.004G085500 Gossypium raimondii HOM05D000335 ORTHO05D001251 1.8e-08 62.8 109 39.4
Peaxi162Scf00876g00114 Petunia axillaris HOM05D000335 ORTHO05D001251 1.8e-08 62.8 109 38.5
Phvul.001G202100 Phaseolus vulgaris HOM05D000335 ORTHO05D001251 1.8e-08 62.8 109 38.5
Sabra04G0098800 Salix brachista HOM05D000335 ORTHO05D001251 1.8e-08 62.8 109 39.4
Eucgr.K03434 Eucalyptus grandis HOM05D000335 ORTHO05D001251 2.3e-08 62.4 97 42.3
Gohir.A08G116100 Gossypium hirsutum HOM05D000335 ORTHO05D001251 2.3e-08 62.4 109 37.6
Gohir.D08G137000 Gossypium hirsutum HOM05D000335 ORTHO05D001251 2.3e-08 62.4 109 37.6
Gorai.004G140200 Gossypium raimondii HOM05D000335 ORTHO05D001251 2.3e-08 62.4 109 37.6
Aqoxy2G03129 Aquilegia oxysepala HOM05D000335 ORTHO05D001251 3.0e-08 62.0 109 38.5
Psat3g024760 Pisum sativum HOM05D000335 ORTHO05D001251 3.0e-08 62.0 109 39.4
CSS0008867 Camellia sinensis var. sinensis HOM05D000335 ORTHO05D001251 3.9e-08 61.6 109 39.4
CSS0017830 Camellia sinensis var. sinensis HOM05D000335 ORTHO05D001251 3.9e-08 61.6 109 39.4
Cc01_g20210 Coffea canephora HOM05D000335 ORTHO05D001251 3.9e-08 61.6 109 38.5
COL.COLO4_08027 Corchorus olitorius HOM05D000335 ORTHO05D001251 3.9e-08 61.6 110 38.2
Gohir.D08G080400 Gossypium hirsutum HOM05D000335 ORTHO05D001251 3.9e-08 61.6 109 39.4
TAR365G0387 Trochodendron aralioides HOM05D000335 ORTHO05D001251 3.9e-08 61.6 108 38.0
arahy.Tifrunner.gnm1.ann1.7HFF48 Arachis hypogaea HOM05D000335 ORTHO05D001251 5.1e-08 61.2 109 38.5
VMungo1383G2875 Vigna mungo HOM05D000335 ORTHO05D001251 5.1e-08 61.2 109 37.6
CANSAT25G1219 Cannabis sativa HOM05D000335 ORTHO05D001251 6.7e-08 60.8 120 38.3
arahy.Tifrunner.gnm1.ann1.CLFR23 Arachis hypogaea HOM05D000335 ORTHO05D001251 8.7e-08 60.5 109 37.6
Eucgr.K03436 Eucalyptus grandis HOM05D000335 ORTHO05D001251 8.7e-08 60.5 108 38.0
Oeu064163.1 Olea europaea HOM05D000335 ORTHO05D001251 8.7e-08 60.5 109 37.6
Lj5g0000574 Lotus japonicus HOM05D000335 ORTHO05D001251 1.1e-07 60.1 99 39.4
Sopen09g029280 Solanum pennellii HOM05D000335 ORTHO05D001251 1.1e-07 60.1 108 38.9
TWI60G0790 Tripterygium wilfordii HOM05D000335 ORTHO05D001251 1.5e-07 59.7 135 34.1
CANSAT54G2860 Cannabis sativa HOM05D000335 ORTHO05D001251 1.9e-07 59.3 113 38.1
AUR62036654 Chenopodium quinoa HOM05D000335 ORTHO05D001251 1.9e-07 59.3 39 74.4
Eucgr.K03435 Eucalyptus grandis HOM05D000335 ORTHO05D001251 1.9e-07 59.3 39 74.4
Lj1g0005861 Lotus japonicus HOM05D000335 ORTHO05D001251 1.9e-07 59.3 109 37.6
Lj1g0008053 Lotus japonicus HOM05D000335 ORTHO05D001251 1.9e-07 59.3 110 37.3
Oeu064159.1 Olea europaea HOM05D000335 ORTHO05D001251 1.9e-07 59.3 109 36.7
Oeu064160.1 Olea europaea HOM05D000335 ORTHO05D001251 1.9e-07 59.3 109 36.7
AUR62034620 Chenopodium quinoa HOM05D000335 ORTHO05D001251 2.5e-07 58.9 39 74.4
Ca_09113_v3 Cicer arietinum L. HOM05D000335 ORTHO05D001251 2.5e-07 58.9 104 40.4
Solyc09g074430.4 Solanum lycopersicum HOM05D000335 ORTHO05D001251 2.5e-07 58.9 108 38.9
QL12p024023 Quercus lobata HOM05D000335 ORTHO05D001251 3.3e-07 58.5 45 71.1
Eucgr.G00316 Eucalyptus grandis HOM05D000335 ORTHO05D001251 4.3e-07 58.2 108 38.0
Cpa.g.sc9.164 Carica papaya HOM05D000335 ORTHO05D001251 5.7e-07 57.8 108 36.1
HanXRQChr10g0283301 Helianthus annuus HOM05D000335 ORTHO05D001251 5.7e-07 57.8 39 74.4
HanXRQChr10g0283321 Helianthus annuus HOM05D000335 ORTHO05D001251 5.7e-07 57.8 39 74.4
Nn4g26047 Nelumbo nucifera HOM05D000335 ORTHO05D001251 5.7e-07 57.8 109 38.5
Oeu047912.1 Olea europaea HOM05D000335 ORTHO05D001251 5.7e-07 57.8 108 36.1
EL10Ac7g17370 Beta vulgaris HOM05D000335 ORTHO05D001251 7.4e-07 57.4 113 37.2
Eucgr.H01211 Eucalyptus grandis HOM05D000335 ORTHO05D001251 7.4e-07 57.4 112 37.5
HanXRQChr05g0146991 Helianthus annuus HOM05D000335 ORTHO05D001251 7.4e-07 57.4 109 33.9
Medtr7g107710 Medicago truncatula HOM05D000335 ORTHO05D001251 7.4e-07 57.4 110 40.0
Sed0023783 Sechium edule HOM05D000335 ORTHO05D001251 7.4e-07 57.4 110 37.3
Ciclev10020503m.g Citrus clementina HOM05D000335 ORTHO05D001251 9.6e-07 57.0 117 36.8
GSVIVG01011005001 Vitis vinifera HOM05D000335 ORTHO05D001251 9.6e-07 57.0 108 38.0
Aqoxy5G01946 Aquilegia oxysepala HOM05D000335 ORTHO05D001251 1.3e-06 56.6 109 35.8
Ciclev10020494m.g Citrus clementina HOM05D000335 ORTHO05D001251 1.3e-06 56.6 117 35.9
ECA247G1664 Erigeron canadensis HOM05D000335 ORTHO05D001251 1.3e-06 56.6 39 69.2
Glyma.19G206200 Glycine max HOM05D000335 ORTHO05D001251 1.3e-06 56.6 39 74.4
HanXRQChr05g0146981 Helianthus annuus HOM05D000335 ORTHO05D001251 1.3e-06 56.6 109 33.9
HanXRQChr05g0147011 Helianthus annuus HOM05D000335 ORTHO05D001251 1.3e-06 56.6 109 33.9
Oeu064157.1 Olea europaea HOM05D000335 ORTHO05D001251 1.3e-06 56.6 109 35.8
ECA247G1301 Erigeron canadensis HOM05D000335 ORTHO05D001251 1.6e-06 56.2 39 69.2
ECA247G4080 Erigeron canadensis HOM05D000335 ORTHO05D001251 1.6e-06 56.2 39 69.2
Glyma.03G208900 Glycine max HOM05D000335 ORTHO05D001251 1.6e-06 56.2 109 35.8
Lsat_1_v5_gn_0_18481 Lactuca sativa HOM05D000335 ORTHO05D001251 1.6e-06 56.2 109 35.8
ATR0987G006 Amborella trichopoda HOM05D000335 ORTHO05D001251 2.1e-06 55.8 39 69.2
arahy.Tifrunner.gnm1.ann1.R7AS23 Arachis hypogaea HOM05D000335 ORTHO05D001251 2.1e-06 55.8 40 65.0
ClCG09G006490 Citrullus lanatus HOM05D000335 ORTHO05D001251 2.1e-06 55.8 110 35.5
ECA232G3288 Erigeron canadensis HOM05D002059 ORTHO05D002210 2.1e-06 55.8 111 34.2
HanXRQChr10g0283181 Helianthus annuus HOM05D000335 ORTHO05D001251 2.1e-06 55.8 39 69.2
MD10G1010000 Malus domestica HOM05D000335 ORTHO05D001251 2.1e-06 55.8 42 64.3
Psat3g024720 Pisum sativum HOM05D000335 ORTHO05D001251 2.1e-06 55.8 109 37.6
arahy.Tifrunner.gnm1.ann1.JH3E8T Arachis hypogaea HOM05D000335 ORTHO05D001251 2.8e-06 55.5 109 36.7
arahy.Tifrunner.gnm1.ann1.K71B7K Arachis hypogaea HOM05D000335 ORTHO05D001251 2.8e-06 55.5 109 36.7
Gohir.D11G140800 Gossypium hirsutum HOM05D000335 ORTHO05D000459 2.8e-06 55.5 76 42.1
MBI05_g28280_MAGBIO Magnolia biondii HOM05D000335 ORTHO05D001251 2.8e-06 55.5 109 34.9
Hund05376 Selenicereus undatus HOM05D000335 ORTHO05D001251 2.8e-06 55.5 108 36.1
BcaB07g30551 Brassica carinata HOM05D000335 ORTHO05D000459 3.7e-06 55.1 76 43.4
DCAR_012429 Daucus carota HOM05D000335 ORTHO05D001251 3.7e-06 55.1 108 37.0
HanXRQChr10g0283161 Helianthus annuus HOM05D000335 ORTHO05D001251 3.7e-06 55.1 39 71.8
Lsat_1_v5_gn_0_18561 Lactuca sativa HOM05D000335 ORTHO05D001251 3.7e-06 55.1 109 34.9
MD15G1274600 Malus domestica HOM05D000335 ORTHO05D001251 3.7e-06 55.1 39 69.2
ATR0776G056 Amborella trichopoda HOM05D000335 ORTHO05D001251 4.8e-06 54.7 39 66.7
AUR62012241 Chenopodium quinoa HOM05D000335 ORTHO05D001251 4.8e-06 54.7 108 33.3
Duzib211G0513 Durio zibethinus HOM05D000335 ORTHO05D000459 4.8e-06 54.7 61 45.9
Gohir.A11G056900 Gossypium hirsutum HOM05D000335 ORTHO05D001251 4.8e-06 54.7 131 32.1
Lsat_1_v5_gn_9_5281 Lactuca sativa HOM05D000335 ORTHO05D001251 4.8e-06 54.7 39 71.8
Nn3g21282 Nelumbo nucifera HOM05D000335 ORTHO05D001251 4.8e-06 54.7 109 36.7
PSO384G0654 Papaver somniferum HOM05D000335 ORTHO05D001251 4.8e-06 54.7 113 34.5
AUR62006006 Chenopodium quinoa HOM05D000335 ORTHO05D001251 6.2e-06 54.3 108 33.3
HanXRQChr01g0024281 Helianthus annuus HOM05D000335 ORTHO05D001251 6.2e-06 54.3 109 33.9
HanXRQChr01g0024301 Helianthus annuus HOM05D000335 ORTHO05D001251 6.2e-06 54.3 109 33.9
HanXRQChr01g0024321 Helianthus annuus HOM05D000335 ORTHO05D001251 6.2e-06 54.3 109 33.9
HanXRQChr01g0024331 Helianthus annuus HOM05D000335 ORTHO05D001251 6.2e-06 54.3 109 33.9
HanXRQChr01g0024371 Helianthus annuus HOM05D000335 ORTHO05D001251 6.2e-06 54.3 109 33.9
HanXRQChr01g0024381 Helianthus annuus HOM05D000335 ORTHO05D001251 6.2e-06 54.3 109 33.9
HanXRQChr04g0117841 Helianthus annuus HOM05D000335 ORTHO05D001251 6.2e-06 54.3 109 33.0
Lj1C39G8 Lonicera japonica HOM05D000335 ORTHO05D001251 6.2e-06 54.3 39 66.7
MD10G1010100 Malus domestica HOM05D000335 ORTHO05D001251 6.2e-06 54.3 39 66.7
MD10G1010200 Malus domestica HOM05D000335 ORTHO05D001251 6.2e-06 54.3 39 66.7
PSO339G4269 Papaver somniferum HOM05D000335 ORTHO05D001251 6.2e-06 54.3 113 34.5
PGR119G0602 Punica granatum HOM05D000335 ORTHO05D001251 6.2e-06 54.3 109 34.9
Aa31LG5G3390 Aethionema arabicum HOM05D000335 ORTHO05D000459 8.2e-06 53.9 76 40.8
arahy.Tifrunner.gnm1.ann1.0HSY14 Arachis hypogaea HOM05D000335 ORTHO05D001251 8.2e-06 53.9 40 65.0
arahy.Tifrunner.gnm1.ann1.23AWEM Arachis hypogaea HOM05D000335 ORTHO05D001251 8.2e-06 53.9 40 65.0
arahy.Tifrunner.gnm1.ann1.2XEP9L Arachis hypogaea HOM05D000335 ORTHO05D001251 8.2e-06 53.9 40 60.0
arahy.Tifrunner.gnm1.ann1.GTB7L5 Arachis hypogaea HOM05D000335 ORTHO05D001251 8.2e-06 53.9 40 65.0
arahy.Tifrunner.gnm1.ann1.IAE6SC Arachis hypogaea HOM05D000335 ORTHO05D001251 8.2e-06 53.9 40 65.0
DCAR_018364 Daucus carota HOM05D000335 ORTHO05D001251 8.2e-06 53.9 109 37.6
Gorai.007G151100 Gossypium raimondii HOM05D000335 ORTHO05D000459 8.2e-06 53.9 76 40.8
HanXRQChr01g0024401 Helianthus annuus HOM05D000335 ORTHO05D001251 8.2e-06 53.9 109 33.9
HanXRQChr01g0024421 Helianthus annuus HOM05D000335 ORTHO05D001251 8.2e-06 53.9 109 33.9
HanXRQChr01g0024431 Helianthus annuus HOM05D000335 ORTHO05D001251 8.2e-06 53.9 109 33.9
HanXRQChr15g0466111 Helianthus annuus HOM05D000335 ORTHO05D001251 8.2e-06 53.9 42 71.4


User provided reference genes

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