Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 2197.5 1145 100.0
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1888.6 1152 86.2
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1764.6 1016 89.2
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1720.3 1148 78.8
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1718.4 1150 78.9
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1699.9 1144 77.7
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1698.3 1002 86.4
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1678.7 1124 78.0
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1674.4 1145 75.7
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1672.9 1126 76.9
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1672.1 1157 76.5
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1671.4 1149 76.0
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1669.8 1151 76.6
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1669.1 1146 75.3
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1668.3 1131 76.0
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1650.6 1144 74.6
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1644.0 1149 74.5
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1640.2 1136 76.0
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1640.2 1125 76.7
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1634.8 1142 76.2
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1632.5 1131 74.4
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1631.7 1146 74.7
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1630.2 1143 75.2
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1624.4 1142 74.2
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1621.7 1131 74.8
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1617.4 1145 73.4
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1613.2 1131 74.5
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1609.7 1147 74.5
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1601.6 1151 72.9
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1598.9 1130 74.4
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1598.6 1144 72.4
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1598.6 1217 70.9
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1595.9 1147 72.6
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1591.6 1136 74.6
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1581.2 1134 74.0
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1578.1 1115 74.3
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1573.9 1134 73.5
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1573.1 1117 73.3
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1572.0 1134 73.8
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1569.3 1135 73.7
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1567.7 1261 67.2
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1565.4 1124 73.2
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1561.2 1158 71.4
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1529.2 1186 68.5
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1525.4 1124 72.7
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1518.1 1144 70.7
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1516.1 1150 69.6
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1513.0 1156 69.7
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1511.9 1180 68.6
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1511.5 1140 71.1
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1511.5 1142 70.1
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1508.0 1115 70.6
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1480.7 1149 69.8
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1479.2 1142 70.3
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1475.7 1122 69.4
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1475.3 1140 67.0
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1474.1 1136 69.5
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1458.7 1171 65.4
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1458.7 1111 67.2
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1452.6 1119 67.6
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1452.2 1051 70.2
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1449.9 1149 67.9
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1449.5 1159 67.5
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1446.0 1118 66.7
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1443.7 1135 65.7
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1442.2 1119 67.1
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1440.2 1050 68.8
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1439.1 1122 68.8
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1428.3 1044 68.8
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1427.2 1099 66.2
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1423.3 1085 66.7
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1422.1 1147 65.2
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1416.7 1115 65.4
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1416.4 1088 67.5
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1414.8 1084 68.2
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1413.7 1121 67.3
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1412.5 1080 68.8
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1411.0 1175 63.7
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1404.0 1103 65.0
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1403.3 1067 66.5
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1399.0 1065 66.4
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1395.9 1122 65.4
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1395.6 1104 66.5
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1394.0 1067 66.3
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1387.9 1076 65.5
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1387.5 1074 65.5
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1386.3 960 74.1
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1385.9 1077 65.6
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1379.4 1124 66.1
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1370.1 1123 65.6
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1355.9 1070 66.0
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1353.6 1385 54.5
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1347.4 1083 64.7
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1305.8 1023 64.5
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1296.6 1060 62.4
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1293.1 1115 63.0
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1291.9 892 76.9
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1284.6 1081 62.4
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1278.5 1126 59.1
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1248.0 1131 57.7
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1235.7 1074 59.2
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1222.2 909 68.5
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1221.1 686 94.5
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 0.0e+00 1208.4 1112 60.0
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1175.6 1112 58.4
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1135.2 826 71.5
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1130.5 957 61.7
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1126.3 1134 56.0
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1096.3 676 80.6
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 8.3e-304 1047.3 1143 51.3
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 2.3e-290 1002.7 783 67.0
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 6.8e-290 1001.1 1024 51.1
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 3.3e-276 955.7 964 50.5
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 2.4e-258 896.3 1011 48.2
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.1e-252 877.5 597 75.5
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.0e-233 813.5 547 76.2
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.0e-233 813.5 547 76.2
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 3.8e-208 729.6 1120 40.6
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.0e-172 610.9 392 80.1
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.9e-106 391.7 400 56.2
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 4.3e-66 257.7 201 63.7
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 6.0e-60 237.3 211 59.2
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 1.9e-58 232.3 593 28.0
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 1.8e-56 225.7 146 75.3
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 5.8e-55 220.7 217 54.8
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 9.8e-55 219.9 165 69.1
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 4.0e-48 198.0 172 60.5
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 7.3e-42 177.2 174 55.7
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 6.2e-41 174.1 174 56.3
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 6.4e-38 164.1 391 30.7
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 5.1e-35 154.5 611 24.4
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 2.4e-32 145.6 154 55.2
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 9.3e-29 133.7 121 59.5
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 5.6e-26 124.4 97 62.9
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 7.6e-23 114.0 107 51.4
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 4.8e-17 94.7 74 64.9
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 7.6e-15 87.4 302 28.5
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 1.3e-14 86.7 305 27.5
COL.COLO4_03377 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.1e-13 83.6 78 67.9
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.1e-13 83.6 84 63.1
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 6.0e-12 77.8 68 58.8
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 1.5e-10 73.2 50 58.0
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 3.1e-08 65.5 94 45.7
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 3.1e-08 65.5 115 39.1
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 5.9e-07 61.2 88 42.0
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 1.0e-06 60.5 82 43.9
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 5.0e-06 58.2 48 60.4
COL.COLO4_15782 Corchorus olitorius HOM05D004682 ORTHO05D006197 8.4e-06 57.4 115 34.8


User provided reference genes

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