Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1798.9 943 100.0
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1220.7 686 94.5
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1086.2 687 84.9
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 6.5e-312 1073.9 667 84.9
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.7e-291 1006.1 660 80.2
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 3.0e-283 978.8 687 76.3
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 2.6e-279 965.7 686 74.8
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.6e-279 965.7 642 76.8
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 4.5e-279 964.9 663 75.3
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 3.8e-278 961.8 682 74.9
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 4.9e-278 961.4 687 75.3
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 7.4e-274 947.6 657 77.2
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 1.3e-273 946.8 644 76.4
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 3.1e-272 942.2 687 74.5
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 2.2e-270 936.0 664 75.9
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 5.6e-266 921.4 701 73.0
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 7.4e-266 921.0 668 72.6
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 9.6e-266 920.6 662 75.4
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 9.6e-266 920.6 666 74.5
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 2.1e-265 919.5 687 71.8
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 1.4e-264 916.8 683 70.9
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 3.1e-264 915.6 644 74.7
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 4.0e-264 915.2 661 71.3
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 2.6e-263 912.5 652 72.1
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 2.6e-263 912.5 661 72.9
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 1.3e-262 910.2 671 74.4
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 2.2e-262 909.4 661 72.8
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 3.2e-261 905.6 662 70.8
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 2.7e-260 902.5 663 70.4
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 2.7e-260 902.5 657 72.5
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 3.5e-260 902.1 663 70.4
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 8.7e-259 897.5 664 70.9
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 1.1e-258 897.1 663 72.1
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 1.1e-256 890.6 642 71.2
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 3.1e-256 889.0 537 84.7
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 9.0e-256 887.5 663 70.1
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 7.7e-255 884.4 642 74.0
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 1.3e-254 883.6 663 69.2
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 2.2e-254 882.9 686 67.8
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.5e-253 879.4 597 75.9
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 4.3e-250 868.6 769 62.7
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 3.7e-249 865.5 670 70.0
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 1.2e-247 860.5 688 66.7
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 1.5e-247 860.1 675 69.5
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 1.5e-247 860.1 639 71.8
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 3.4e-247 859.0 674 69.7
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 2.2e-246 856.3 674 69.4
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 2.2e-246 856.3 662 69.2
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 1.2e-244 850.5 727 62.7
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 2.1e-244 849.7 664 68.5
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 2.1e-244 849.7 688 66.6
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 4.7e-244 848.6 675 69.3
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 3.0e-243 845.9 709 66.0
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 2.2e-241 839.7 667 68.4
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 4.8e-241 838.6 665 69.0
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 1.5e-239 833.6 687 62.4
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 3.8e-238 828.9 688 66.6
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 8.5e-238 827.8 664 65.7
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 1.6e-236 823.5 665 68.4
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 3.6e-236 822.4 686 65.5
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 3.3e-234 815.8 707 60.8
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 9.7e-234 814.3 663 63.2
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 9.7e-234 814.3 667 67.0
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 1.3e-233 813.9 664 63.3
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 1.1e-232 810.8 665 64.8
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 5.0e-230 802.0 635 64.1
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 3.2e-229 799.3 664 63.4
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 6.1e-228 795.0 640 66.7
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 8.0e-228 794.7 672 66.2
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 4.4e-226 788.9 634 63.9
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 7.5e-226 788.1 651 62.4
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 1.7e-225 786.9 638 66.0
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 2.8e-225 786.2 687 64.9
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 1.4e-224 783.9 664 60.5
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 4.1e-224 782.3 686 61.1
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 9.1e-224 781.2 689 61.2
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 4.5e-223 778.9 640 62.3
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 2.9e-222 776.2 642 63.9
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 1.0e-219 767.7 588 64.8
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 1.5e-218 763.8 663 59.3
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 1.5e-218 763.8 665 59.1
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 2.8e-217 759.6 643 65.2
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 4.8e-217 758.8 660 62.1
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 4.1e-216 755.7 661 58.5
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 4.1e-216 755.7 665 59.2
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 5.9e-215 751.9 640 59.8
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 1.0e-214 751.1 652 58.9
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 1.3e-214 750.7 641 62.9
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 1.7e-214 750.4 661 58.4
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 2.3e-214 750.0 663 58.4
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 3.3e-213 746.1 654 58.7
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 3.3e-213 746.1 646 62.1
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 1.2e-212 744.2 594 65.2
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 8.9e-211 738.0 664 57.8
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 4.4e-210 735.7 597 63.0
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 3.9e-206 722.6 678 57.1
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 7.5e-202 708.4 885 46.8
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 6.6e-198 695.3 630 62.2
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 1.2e-196 691.0 591 59.1
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 1.6e-196 690.6 618 58.9
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 1.7e-193 680.6 672 54.0
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 2.7e-191 673.3 635 54.6
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 2.5e-189 666.8 676 52.7
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.2e-180 637.9 549 60.7
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.8e-180 636.7 663 53.8
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 3.4e-178 629.8 455 70.3
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 4.9e-177 625.9 663 53.5
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.1e-159 567.4 424 66.5
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 1.1e-155 555.1 628 46.8
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.5e-146 524.6 600 46.3
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 9.4e-136 488.8 579 44.2
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 5.1e-134 483.0 366 67.5
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 4.5e-130 469.9 405 61.2
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 2.5e-128 464.2 623 42.1
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.4e-117 426.8 274 78.1
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 4.1e-107 393.7 399 56.6
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 2.3e-86 324.7 679 35.9
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.9e-60 238.0 211 59.7
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 7.3e-56 223.4 217 55.8
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 2.8e-55 221.5 165 69.7
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 3.9e-49 201.1 172 61.6
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 9.3e-43 179.9 174 56.9
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.8e-41 175.6 174 56.3
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.0e-28 131.0 121 57.9
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 3.5e-26 124.8 97 62.9
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.3e-22 110.9 107 49.5
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 8.5e-20 103.6 86 60.5
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.2e-19 101.7 58 81.0
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.2e-19 101.7 58 81.0
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 1.8e-14 85.9 302 28.5
COL.COLO4_03377 Corchorus olitorius HOM05D004682 ORTHO05D006197 4.1e-14 84.7 78 73.1
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.4e-13 81.6 84 61.9
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 6.1e-10 70.9 93 39.8
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 1.1e-08 66.6 115 39.1
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 1.5e-08 66.2 168 27.4
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 2.0e-08 65.9 94 45.7
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 2.8e-07 62.0 82 43.9
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 4.8e-07 61.2 88 42.0
COL.COLO4_15782 Corchorus olitorius HOM05D004682 ORTHO05D006197 1.4e-06 59.7 148 29.7


User provided reference genes

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