Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p023217 Quercus lobata HOM05D007464 ORTHO05D009388 1.7e-252 875.9 579 100.0
Haze_04781 Corylus avellana HOM05D007464 ORTHO05D009388 1.8e-129 467.2 381 75.3
Cfa006067 Carpinus fangiana HOM05D007464 ORTHO05D009388 1.3e-124 451.1 380 74.2
CiPaw.07G097200 Carya illinoinensis HOM05D007464 ORTHO05D009388 7.8e-117 425.2 381 65.4
Atru.chr5.1306 Acer truncatum HOM05D007464 ORTHO05D009388 2.2e-111 407.1 384 68.8
Manes.05G070400 Manihot esculenta HOM05D007464 ORTHO05D009388 1.9e-110 404.1 382 58.6
Potri.002G213200 Populus trichocarpa HOM05D007464 ORTHO05D009388 7.1e-110 402.1 383 56.9
TWI59G0843 Tripterygium wilfordii HOM05D007464 ORTHO05D009388 1.0e-108 398.3 382 56.5
Duzib138G0973 Durio zibethinus HOM05D007464 ORTHO05D009388 3.9e-108 396.4 382 56.0
Prupe.8G249900 Prunus persica HOM05D007464 ORTHO05D009388 3.9e-108 396.4 384 59.6
Duzib211G0172 Durio zibethinus HOM05D007464 ORTHO05D009388 1.5e-107 394.4 382 55.0
Sabra14G0102300 Salix brachista HOM05D007464 ORTHO05D009388 1.5e-107 394.4 383 57.7
MD11G1296100 Malus domestica HOM05D007464 ORTHO05D009388 7.3e-107 392.1 384 57.3
Thecc.01G287900 Theobroma cacao HOM05D007464 ORTHO05D009388 1.6e-106 391.0 382 53.1
COL.COLO4_08053 Corchorus olitorius HOM05D007464 ORTHO05D009388 6.2e-106 389.0 383 56.9
MD03G1273500 Malus domestica HOM05D007464 ORTHO05D009388 1.1e-105 388.3 384 58.6
RcHm_v2.0_Chr6g0292251 Rosa chinensis HOM05D007464 ORTHO05D009388 4.4e-104 382.9 383 64.5
Dinv32981 Davidia involucrata HOM05D007464 ORTHO05D009388 7.6e-104 382.1 384 53.9
Duzib133G1000 Durio zibethinus HOM05D007464 ORTHO05D009388 1.2e-101 374.8 382 54.2
FAN20G1108 Fragaria x ananassa HOM05D007464 ORTHO05D009388 1.0e-100 371.7 383 63.7
FvH4_2g24420 Fragaria vesca HOM05D007464 ORTHO05D009388 1.3e-100 371.3 383 64.0
FAN24G2954 Fragaria x ananassa HOM05D007464 ORTHO05D009388 1.3e-100 371.3 383 64.0
TAR362G0634 Trochodendron aralioides HOM05D007464 ORTHO05D009388 5.1e-100 369.4 384 56.0
CANSAT25G0135 Cannabis sativa HOM05D007464 ORTHO05D009388 9.6e-99 365.2 381 64.3
Cpa.g.sc9.143 Carica papaya HOM05D007464 ORTHO05D009388 2.8e-98 363.6 383 49.3
FAN15G0926 Fragaria x ananassa HOM05D007464 ORTHO05D009388 8.1e-98 362.1 383 62.9
FAN27G3498 Fragaria x ananassa HOM05D007464 ORTHO05D009388 4.5e-96 356.3 383 62.1
Actinidia00714 Actinidia chinensis HOM05D007464 ORTHO05D009388 2.2e-95 354.0 383 57.4
Lsat_1_v5_gn_5_189900 Lactuca sativa HOM05D007464 ORTHO05D009388 3.8e-95 353.2 381 54.9
Gohir.A08G184300 Gossypium hirsutum HOM05D007464 ORTHO05D009388 6.4e-95 352.4 383 52.2
Lalb_Chr06g0163271 Lupinus albus HOM05D007464 ORTHO05D009388 8.4e-95 352.1 385 55.8
CsaV3_7G028410 Cucumis sativus L. HOM05D007464 ORTHO05D009388 1.1e-94 351.7 379 62.8
Hma1.2p1_1651F.1_g295790 Hydrangea macrophylla HOM05D007464 ORTHO05D009388 4.2e-94 349.7 385 54.5
Gohir.D08G202800 Gossypium hirsutum HOM05D007464 ORTHO05D009388 1.6e-93 347.8 383 51.4
Gorai.004G214200 Gossypium raimondii HOM05D007464 ORTHO05D009388 2.7e-93 347.1 383 51.4
PGR119G1331 Punica granatum HOM05D007464 ORTHO05D009388 6.0e-93 345.9 383 52.2
Ciclev10019999m.g Citrus clementina HOM05D007464 ORTHO05D009388 5.1e-92 342.8 382 52.9
MELO3C015881.2 Cucumis melo HOM05D007464 ORTHO05D009388 1.1e-91 341.7 379 62.0
ClCG09G006650 Citrullus lanatus HOM05D007464 ORTHO05D009388 9.6e-91 338.6 379 59.9
VMungo0720G1822 Vigna mungo HOM05D007464 ORTHO05D009388 2.8e-90 337.0 386 60.9
Ca_10384_v3 Cicer arietinum L. HOM05D007464 ORTHO05D009388 1.8e-89 334.3 383 60.6
Nitab4.5_0008256g0020 Nicotiana tabacum HOM05D007464 ORTHO05D009388 1.8e-89 334.3 387 52.5
Solyc09g074280.1 Solanum lycopersicum HOM05D007464 ORTHO05D009388 1.2e-88 331.6 382 51.8
arahy.Tifrunner.gnm1.ann1.TWB4J4 Arachis hypogaea HOM05D007464 ORTHO05D009388 2.6e-88 330.5 383 53.5
ECA248G1268 Erigeron canadensis HOM05D007464 ORTHO05D009388 2.6e-88 330.5 384 51.0
Hma1.2p1_0209F.1_g089270 Hydrangea macrophylla HOM05D007464 ORTHO05D009388 3.4e-88 330.1 386 51.6
DCAR_002779 Daucus carota HOM05D007464 ORTHO05D009388 5.8e-88 329.3 382 51.8
SalBow2G2643 Salvia bowleyana HOM05D007464 ORTHO05D009388 5.8e-88 329.3 384 51.3
Sopen09g029110 Solanum pennellii HOM05D007464 ORTHO05D009388 7.6e-88 328.9 382 51.8
arahy.Tifrunner.gnm1.ann1.KRYP2Z Arachis hypogaea HOM05D007464 ORTHO05D009388 9.9e-88 328.6 383 47.8
Psat6g168480 Pisum sativum HOM05D007464 ORTHO05D009388 2.9e-87 327.0 382 53.1
Glyma.02G151200 Glycine max HOM05D007464 ORTHO05D009388 3.8e-87 326.6 388 51.3
Medtr1g089180 Medicago truncatula HOM05D007464 ORTHO05D009388 6.4e-87 325.9 382 52.4
Nn4g26088 Nelumbo nucifera HOM05D007464 ORTHO05D009388 1.1e-86 325.1 394 50.3
Phvul.007G167500 Phaseolus vulgaris HOM05D007464 ORTHO05D009388 2.4e-86 323.9 386 52.6
DCAR_012440 Daucus carota HOM05D007464 ORTHO05D009388 3.5e-85 320.1 382 51.3
Cc01_g20010 Coffea canephora HOM05D007464 ORTHO05D009388 3.0e-84 317.0 389 50.9
DCAR_018375 Daucus carota HOM05D007464 ORTHO05D009388 3.9e-84 316.6 382 51.6
DCAR_018376 Daucus carota HOM05D007464 ORTHO05D009388 3.9e-84 316.6 382 51.6
PGSC0003DMG400034780 Solanum tuberosum HOM05D007464 ORTHO05D009388 3.3e-83 313.5 382 51.3
PGSC0003DMG402003815 Solanum tuberosum HOM05D007464 ORTHO05D009388 3.3e-83 313.5 382 51.3
CAN.G1466.5 Capsicum annuum HOM05D007464 ORTHO05D009388 5.6e-83 312.8 387 50.6
Solyc09g074290.1 Solanum lycopersicum HOM05D007464 ORTHO05D009388 9.6e-83 312.0 382 51.0
arahy.Tifrunner.gnm1.ann1.9V8R16 Arachis hypogaea HOM05D007464 ORTHO05D009388 1.6e-82 311.2 391 52.4
Sopen09g029120 Solanum pennellii HOM05D007464 ORTHO05D009388 1.4e-81 308.1 382 50.8
Nitab4.5_0001985g0030 Nicotiana tabacum HOM05D007464 ORTHO05D009388 1.8e-81 307.8 387 50.4
Peaxi162Scf00006g00365 Petunia axillaris HOM05D007464 ORTHO05D009388 6.9e-81 305.8 386 48.2
PGSC0003DMG401003815 Solanum tuberosum HOM05D007464 ORTHO05D009388 1.5e-80 304.7 382 49.7
ECA247G3730 Erigeron canadensis HOM05D007464 ORTHO05D009388 2.6e-80 303.9 383 49.1
Nitab4.5_0008984g0010 Nicotiana tabacum HOM05D007464 ORTHO05D009388 1.0e-79 302.0 387 49.6
HanXRQChr01g0002881 Helianthus annuus HOM05D007464 ORTHO05D009388 8.4e-79 298.9 383 50.1
Lsat_1_v5_gn_9_5000 Lactuca sativa HOM05D007464 ORTHO05D009388 9.3e-78 295.4 384 48.7
Lj5g0006511 Lotus japonicus HOM05D007464 ORTHO05D009388 2.5e-75 287.3 384 56.2
HanXRQChr10g0283061 Helianthus annuus HOM05D007464 ORTHO05D009388 8.2e-74 282.3 384 46.9
Aqoxy5G00591 Aquilegia oxysepala HOM05D007464 ORTHO05D009388 1.1e-73 282.0 358 47.2
MBI19_g27178_MAGBIO Magnolia biondii HOM05D007464 ORTHO05D009388 1.1e-73 282.0 387 47.8
vmacro02528 Vaccinium macrocarpon HOM05D007464 ORTHO05D009388 1.4e-73 281.6 402 47.8
Migut.D00243 Erythranthe guttata HOM05D007464 ORTHO05D009388 6.5e-71 272.7 388 46.9
PSO832G1506 Papaver somniferum HOM05D007464 ORTHO05D009388 1.4e-70 271.6 383 47.0
Peaxi162Scf00006g00369 Petunia axillaris HOM05D007464 ORTHO05D009388 1.2e-69 268.5 352 49.7
Eucgr.H01612 Eucalyptus grandis HOM05D007464 ORTHO05D009388 1.3e-68 265.0 386 48.7
PSO210G5947 Papaver somniferum HOM05D007464 ORTHO05D009388 1.3e-68 265.0 383 45.4
Lj1C41G0 Lonicera japonica HOM05D007464 ORTHO05D009388 7.9e-61 239.2 292 49.0
arahy.Tifrunner.gnm1.ann1.6Q5HDN Arachis hypogaea HOM05D007464 ORTHO05D009388 2.8e-58 230.7 297 50.8
Nitab4.5_0001985g0010 Nicotiana tabacum HOM05D007464 ORTHO05D009388 1.2e-56 225.3 259 45.2
TPR.G16955 Trifolium pratense HOM05D007464 ORTHO05D009388 1.8e-52 211.5 381 37.0
CDE05G3330 Ceratophyllum demersum HOM05D007464 ORTHO05D009388 3.1e-49 200.7 386 38.9
Rhsim13G0020100 Rhododendron simsii HOM05D007464 ORTHO05D009388 9.7e-43 179.1 372 40.9
HPP92_013668 Vanilla planifolia HOM05D007464 ORTHO05D009388 1.6e-40 171.8 287 37.3
ATR0487G010 Amborella trichopoda HOM05D007464 ORTHO05D009388 3.2e-38 164.1 389 35.7
CAN.G1466.4 Capsicum annuum HOM05D007464 ORTHO05D009388 1.4e-33 148.7 271 43.5
HPP92_011796 Vanilla planifolia HOM05D007464 ORTHO05D009388 3.1e-33 147.5 288 34.7
HPP92_006947 Vanilla planifolia HOM05D007464 ORTHO05D009388 5.4e-33 146.7 290 33.8
HPP92_013650 Vanilla planifolia HOM05D007464 ORTHO05D009388 1.3e-31 142.1 253 36.0
Oeu038991.1 Olea europaea HOM05D007464 ORTHO05D009388 8.3e-26 122.9 158 42.4
Dinv11280 Davidia involucrata HOM05D007464 ORTHO05D009388 7.5e-19 99.8 289 34.9
SEGI_03126 Sequoiadendron giganteum HOM05D006239 ORTHO05D009388 1.3e-18 99.0 197 37.1
RcHm_v2.0_Chr4g0395561 Rosa chinensis HOM05D007464 ORTHO05D009388 4.9e-18 97.1 100 48.0
AagrBONN_evm.TU.Sc2ySwM_362.193 Anthoceros agrestis HOM05D006239 ORTHO05D008159 5.2e-12 77.0 225 28.4
Oeu022809.1 Olea europaea HOM05D007464 ORTHO05D009388 5.2e-12 77.0 41 78.0
SEGI_06606 Sequoiadendron giganteum HOM05D006239 ORTHO05D008159 1.7e-10 72.0 386 33.9
Manes.11G152127 Manihot esculenta HOM05D007663 ORTHO05D009455 1.1e-09 69.3 380 35.8
Sabra10G0142400 Salix brachista HOM05D007663 ORTHO05D009455 1.1e-09 69.3 284 26.1
Nitab4.5_0000409g0130 Nicotiana tabacum HOM05D007663 ORTHO05D009455 1.4e-09 68.9 388 29.6
Manes.07G134100 Manihot esculenta HOM05D007663 ORTHO05D009455 3.2e-09 67.8 283 28.3
Nitab4.5_0001985g0020 Nicotiana tabacum HOM05D007464 ORTHO05D009388 5.4e-09 67.0 44 65.9
Manes.11G152176 Manihot esculenta HOM05D007663 ORTHO05D009455 7.0e-09 66.6 387 37.2
MBI15_g12399_MAGBIO Magnolia biondii HOM05D007663 ORTHO05D009455 9.2e-09 66.2 299 23.7
CANSAT56G3657 Cannabis sativa HOM05D007663 ORTHO05D009455 1.2e-08 65.9 391 32.2
Mapoly0012s0013 Marchantia polymorpha HOM05D006239 ORTHO05D009455 2.0e-08 65.1 189 27.5
Mapoly0060s0009 Marchantia polymorpha HOM05D006239 ORTHO05D008159 2.0e-08 65.1 139 33.1
CiPaw.01G301100 Carya illinoinensis HOM05D007663 ORTHO05D009455 2.7e-08 64.7 393 33.8
Zm00001eb218330 Zea mays HOM05D006239 ORTHO05D008159 4.6e-08 63.9 423 27.4
DCAR_010462 Daucus carota HOM05D007663 ORTHO05D009455 6.0e-08 63.5 276 25.4
Nitab4.5_0001222g0010 Nicotiana tabacum HOM05D007663 ORTHO05D009455 6.0e-08 63.5 302 25.5
Medtr2g045090 Medicago truncatula HOM05D007464 ORTHO05D009388 1.0e-07 62.8 67 44.8
Migut.F00643 Erythranthe guttata HOM05D007663 ORTHO05D009455 1.7e-07 62.0 304 24.7
Cc02_g05740 Coffea canephora HOM05D007663 ORTHO05D009455 2.3e-07 61.6 295 25.4
Manes.11G152184 Manihot esculenta HOM05D007663 ORTHO05D009455 2.3e-07 61.6 286 27.3
Lsat_1_v5_gn_2_124440 Lactuca sativa HOM05D007663 ORTHO05D009455 3.0e-07 61.2 303 23.1
Manes.05G009249 Manihot esculenta HOM05D007663 ORTHO05D009455 3.0e-07 61.2 287 28.2
CSS0001014 Camellia sinensis var. sinensis HOM05D007663 ORTHO05D009455 3.9e-07 60.8 309 24.6
HanXRQChr14g0459391 Helianthus annuus HOM05D007663 ORTHO05D009455 3.9e-07 60.8 300 24.0
Sopen03g025840 Solanum pennellii HOM05D007663 ORTHO05D009455 3.9e-07 60.8 306 23.2
SalBow3G1672 Salvia bowleyana HOM05D007663 ORTHO05D009455 5.0e-07 60.5 301 25.2
Glyma.06G198600 Glycine max HOM05D007464 ORTHO05D009388 1.1e-06 59.3 44 61.4
Nn2g10961 Nelumbo nucifera HOM05D007663 ORTHO05D009455 1.1e-06 59.3 297 25.3
TWI73G0671 Tripterygium wilfordii HOM05D007663 ORTHO05D009455 1.1e-06 59.3 401 33.4
Dinv21764 Davidia involucrata HOM05D007663 ORTHO05D009455 1.5e-06 58.9 298 24.2
CSS0017188 Camellia sinensis var. sinensis HOM05D007663 ORTHO05D009455 1.9e-06 58.5 303 23.8
vmacro06952 Vaccinium macrocarpon HOM05D007663 ORTHO05D009455 1.9e-06 58.5 304 23.0
vmacro17693 Vaccinium macrocarpon HOM05D007663 ORTHO05D009455 1.9e-06 58.5 304 23.0
CAN.G156.14 Capsicum annuum HOM05D007663 ORTHO05D009455 2.5e-06 58.2 305 22.0
Manes.11G152141 Manihot esculenta HOM05D007663 ORTHO05D009455 2.5e-06 58.2 372 34.7
Peaxi162Scf00304g00013 Petunia axillaris HOM05D007663 ORTHO05D009455 2.5e-06 58.2 293 23.2
Solyc03g095860.3 Solanum lycopersicum HOM05D007663 ORTHO05D009455 2.5e-06 58.2 306 22.9
Aqoxy2G00815 Aquilegia oxysepala HOM05D007663 ORTHO05D009455 3.3e-06 57.8 408 33.8
PGSC0003DMG400027722 Solanum tuberosum HOM05D007663 ORTHO05D009455 4.3e-06 57.4 306 22.2
Cpa.g.sc65.132 Carica papaya HOM05D007663 ORTHO05D009455 5.6e-06 57.0 295 23.4
Rhsim03G0146000 Rhododendron simsii HOM05D007663 ORTHO05D009455 9.5e-06 56.2 292 24.3


User provided reference genes

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