Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 9.1e-240 833.2 422 100.0
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 4.1e-184 648.3 420 79.0
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 4.7e-180 634.8 420 77.9
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 3.4e-154 548.9 423 66.9
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 5.4e-152 541.6 420 68.6
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 4.3e-149 531.9 420 65.2
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 7.6e-146 521.2 436 64.4
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 2.4e-144 516.2 423 64.1
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 7.1e-144 514.6 424 63.0
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 3.5e-143 512.3 419 65.6
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 2.9e-137 492.7 423 61.5
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 4.9e-137 491.9 435 60.5
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.1e-136 490.7 424 60.8
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 1.2e-135 487.3 439 59.2
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 2.1e-135 486.5 422 60.4
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 1.1e-133 480.7 424 59.9
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 1.9e-133 479.9 421 60.6
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 3.3e-133 479.2 423 58.9
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 4.1e-131 472.2 421 60.3
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 9.0e-131 471.1 421 60.3
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.0e-130 469.9 421 60.1
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 1.3e-129 467.2 422 58.8
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 8.5e-129 464.5 421 59.6
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 8.5e-129 464.5 433 57.5
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 1.1e-128 464.2 431 57.5
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 5.5e-128 461.8 423 57.2
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 6.1e-127 458.4 421 58.9
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.0e-126 457.6 440 55.9
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 1.9e-125 453.4 361 65.9
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.8e-123 446.8 397 59.2
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 7.7e-122 441.4 425 55.3
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.9e-121 439.5 422 54.7
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.8e-121 439.1 425 54.8
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 8.5e-121 438.0 425 55.1
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 1.9e-120 436.8 426 57.0
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 4.2e-120 435.6 434 54.6
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 2.3e-118 429.9 450 52.9
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 6.7e-118 428.3 440 52.5
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 5.7e-117 425.2 421 53.4
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 5.7e-117 425.2 426 56.6
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.3e-116 424.1 332 69.9
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 1.3e-116 424.1 421 53.9
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 1.3e-116 424.1 422 55.7
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 8.2e-116 421.4 424 54.2
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 1.1e-115 421.0 423 53.4
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 2.4e-115 419.9 425 56.2
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 7.0e-115 418.3 426 56.3
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.0e-113 414.5 427 53.2
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 3.8e-113 412.5 425 56.2
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 5.0e-113 412.1 427 52.9
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 3.2e-112 409.5 348 61.5
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 7.2e-112 408.3 422 54.3
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 9.4e-112 407.9 422 53.6
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 8.0e-111 404.8 425 53.9
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 8.8e-110 401.4 398 55.5
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 2.0e-109 400.2 435 52.2
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 2.6e-109 399.8 421 52.3
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 4.4e-109 399.1 421 53.0
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 3.7e-108 396.0 432 52.8
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 3.7e-108 396.0 415 54.2
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 8.2e-108 394.8 426 54.9
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.8e-107 393.7 424 53.1
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 9.1e-107 391.3 431 50.1
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 8.5e-105 384.8 426 51.9
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 1.5e-104 384.0 424 51.4
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.5e-104 383.3 427 51.3
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 2.5e-104 383.3 427 51.3
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 6.1e-103 378.6 425 49.6
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 1.4e-102 377.5 437 49.4
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 2.3e-102 376.7 424 51.2
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 3.0e-102 376.3 431 50.8
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.2e-101 374.4 403 53.6
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.2e-101 374.4 435 46.7
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 9.1e-99 364.8 435 47.8
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 9.1e-99 364.8 482 45.0
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 2.7e-98 363.2 424 49.1
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 1.7e-97 360.5 447 45.4
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 6.5e-97 358.6 437 47.1
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 2.5e-96 356.7 422 48.1
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 3.2e-96 356.3 433 45.0
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 5.5e-96 355.5 438 46.3
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 8.0e-95 351.7 426 46.0
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 2.3e-94 350.1 424 49.3
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 2.3e-94 350.1 428 49.8
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 2.3e-94 350.1 435 44.8
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 3.0e-94 349.7 424 46.9
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 4.0e-94 349.4 423 48.2
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 6.8e-94 348.6 435 44.4
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 4.4e-93 345.9 425 48.0
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 7.5e-93 345.1 445 45.8
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.7e-92 344.0 441 45.4
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 2.2e-92 343.6 419 45.6
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 2.8e-92 343.2 441 46.9
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 6.3e-92 342.0 445 45.6
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.2e-90 337.8 425 42.4
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 5.9e-90 335.5 427 45.2
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 7.7e-90 335.1 437 48.5
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 1.1e-88 331.3 428 43.5
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 1.1e-88 331.3 427 44.0
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.1e-88 331.3 428 44.6
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 3.3e-88 329.7 428 43.2
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.0e-86 324.7 425 43.5
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.4e-86 324.3 411 45.3
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 8.9e-86 321.6 321 53.6
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 4.4e-85 319.3 428 43.5
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 7.5e-85 318.5 433 46.4
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 6.3e-84 315.5 420 47.4
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 2.7e-82 310.1 350 47.7
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 3.5e-82 309.7 433 44.6
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 4.5e-82 309.3 427 41.7
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 1.5e-77 294.3 428 40.9
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 7.5e-77 292.0 417 42.2
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.3e-76 291.2 425 42.6
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.7e-76 290.8 427 40.5
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 2.7e-74 283.5 433 40.6
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 6.0e-74 282.3 339 49.0
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 7.8e-74 282.0 418 42.1
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 6.8e-70 268.9 418 39.5
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 6.8e-70 268.9 301 53.2
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.6e-66 257.7 409 41.8
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.7e-66 256.9 410 41.0
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.9e-65 253.1 271 51.3
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 9.5e-64 248.4 416 36.5
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 4.7e-63 246.1 418 36.6
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.3e-62 243.8 271 49.1
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 3.4e-61 240.0 353 42.5
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 1.1e-59 235.0 176 66.5
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 6.0e-58 229.2 370 40.3
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 1.9e-48 197.6 436 34.2
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 1.6e-47 194.5 420 32.4
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 5.8e-45 186.0 388 36.6
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.4e-38 164.9 169 53.3
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.2e-34 151.8 437 30.7
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 2.1e-34 151.0 200 42.5
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 4.8e-31 139.8 213 39.0
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 1.4e-27 128.3 145 46.9
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.9e-27 127.9 145 46.9
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 3.2e-27 127.1 138 48.6
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 3.2e-27 127.1 141 47.5
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 3.2e-27 127.1 141 47.5
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 4.3e-24 116.7 162 39.5
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 1.4e-22 111.7 84 67.9
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 2.0e-21 107.8 409 26.4
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.4e-21 107.1 126 50.0
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 1.7e-20 104.8 112 50.9
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 6.7e-17 92.8 65 72.3
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 2.4e-14 84.3 276 26.8
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 1.7e-12 78.2 70 51.4
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 1.7e-12 78.2 70 51.4
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 2.9e-12 77.4 62 54.8
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 2.5e-11 74.3 84 47.6
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 4.2e-11 73.6 140 32.1
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 1.2e-10 72.0 67 52.2
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 1.2e-10 72.0 67 52.2
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 1.2e-10 72.0 67 52.2
arahy.Tifrunner.gnm1.ann1.HAWP0L Arachis hypogaea HOM05D019977 ORTHO05D005065 1.4e-09 68.6 198 31.3
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 1.1e-08 65.5 85 43.5
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 2.5e-08 64.3 54 53.7
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 9.7e-08 62.4 80 37.5
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 1.1e-06 58.9 92 43.5
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.8e-06 58.2 52 53.8
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.8e-06 58.2 52 53.8
Glyma.05G088550 Glycine max HOM05D004053 ORTHO05D005065 2.4e-06 57.8 85 38.8
C05p54450 Brassica napus HOM05D021248 ORTHO05D018618 3.1e-06 57.4 52 51.9
BolC5t28964H Brassica oleracea HOM05D004053 ORTHO05D005065 3.1e-06 57.4 114 33.3
Psat4g131480 Pisum sativum HOM05D004053 ORTHO05D005065 5.3e-06 56.6 79 36.7
C01p45260 Brassica napus HOM05D021248 ORTHO05D018618 6.9e-06 56.2 52 51.9
arahy.Tifrunner.gnm1.ann1.Z8WERX Arachis hypogaea HOM05D004053 ORTHO05D005065 9.1e-06 55.8 60 50.0


User provided reference genes

Program Settings