Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 9.3e-306 1052.7 538 100.0
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 1.7e-235 819.3 520 81.3
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 6.1e-225 784.3 540 77.0
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 6.8e-224 780.8 528 78.0
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 5.4e-221 771.2 522 77.8
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 3.6e-217 758.4 526 75.5
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 6.2e-217 757.7 524 76.1
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 6.2e-217 757.7 524 76.1
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 1.8e-216 756.1 527 75.3
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 5.2e-216 754.6 524 75.6
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 4.4e-215 751.5 522 75.7
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 6.4e-214 747.7 522 75.9
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 4.1e-213 745.0 521 74.7
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 3.5e-212 741.9 525 74.3
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.5e-212 741.9 525 74.3
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.9e-210 736.1 521 74.1
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 5.6e-210 734.6 516 74.2
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 7.3e-210 734.2 494 76.3
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 2.3e-208 729.2 515 75.3
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.4e-207 725.3 505 74.9
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 9.9e-207 723.8 505 75.0
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 1.7e-206 723.0 526 73.4
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 2.2e-206 722.6 522 73.0
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.9e-206 722.2 520 73.7
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.4e-205 719.9 514 74.5
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 2.4e-205 719.2 514 74.3
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 3.2e-205 718.8 539 69.6
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 4.1e-205 718.4 505 74.5
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 5.4e-205 718.0 514 73.9
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 3.5e-204 715.3 524 72.9
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 6.0e-204 714.5 524 72.3
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.3e-203 713.4 513 73.9
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.3e-203 713.4 521 71.6
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 1.7e-203 713.0 531 71.6
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 2.5e-202 709.1 514 72.8
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 4.3e-202 708.4 524 70.4
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 1.2e-201 706.8 529 72.4
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 6.8e-200 701.0 571 67.6
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 2.2e-198 696.0 564 67.7
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 4.9e-198 694.9 529 69.8
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 6.4e-198 694.5 477 74.0
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 6.4e-198 694.5 542 69.4
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 1.9e-197 693.0 528 69.7
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 3.0e-195 685.6 510 70.0
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 5.1e-195 684.9 495 72.3
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 2.1e-193 679.5 532 68.0
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 2.8e-193 679.1 513 70.2
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 4.0e-192 675.2 510 69.6
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 1.2e-191 673.7 518 69.7
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.7e-188 662.5 526 68.3
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 6.0e-188 661.4 511 69.3
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 1.5e-183 646.7 512 68.0
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 2.6e-183 646.0 516 67.1
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 2.4e-181 639.4 517 66.7
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.9e-178 629.8 435 75.6
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 9.6e-178 627.5 532 62.8
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 2.0e-175 619.8 539 61.8
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 2.6e-175 619.4 556 62.4
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 4.9e-174 615.1 525 65.7
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 3.5e-172 609.0 534 63.7
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 1.4e-168 597.0 515 62.3
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 3.1e-168 595.9 508 63.4
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 2.2e-166 589.7 520 61.7
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.6e-164 583.6 527 62.2
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 2.1e-164 583.2 562 58.5
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 1.1e-160 570.9 534 61.8
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 1.6e-156 557.0 512 60.5
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.1e-154 550.8 400 73.2
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.2e-153 546.6 504 62.1
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 1.5e-151 540.4 512 58.8
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 1.0e-147 527.7 407 68.1
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 1.8e-147 526.9 561 55.8
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 3.0e-147 526.2 497 58.6
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 3.9e-147 525.8 476 59.7
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 4.8e-137 492.3 357 71.1
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.8e-136 490.3 448 59.2
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 3.1e-136 489.6 345 75.4
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.6e-135 487.3 341 72.7
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 3.6e-132 476.1 487 51.7
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 7.2e-125 451.8 513 53.2
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 4.7e-124 449.1 426 57.5
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.8e-115 420.6 388 59.5
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 2.5e-93 347.1 468 46.4
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 3.3e-93 346.7 389 55.8
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 8.9e-91 338.6 495 45.7
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 9.6e-77 292.0 464 40.1
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 2.8e-76 290.4 196 73.0
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 3.6e-76 290.0 281 59.8
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 1.5e-74 284.6 458 38.4
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 6.4e-73 279.3 468 39.3
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.1e-72 278.5 468 38.5
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 9.3e-72 275.4 464 38.4
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.2e-71 275.0 426 42.3
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 1.6e-71 274.6 462 38.7
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 7.9e-71 272.3 459 38.6
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 6.6e-70 269.2 451 38.8
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 3.3e-69 266.9 443 40.2
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 9.6e-69 265.4 434 41.0
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 1.6e-68 264.6 444 40.5
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 2.1e-68 264.2 518 39.0
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 3.6e-68 263.5 444 40.3
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.1e-67 261.9 468 38.2
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.1e-67 261.9 428 40.4
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.8e-67 261.2 521 37.2
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 6.9e-67 259.2 462 37.4
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 9.0e-67 258.8 432 39.8
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.4e-66 256.9 431 39.7
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 5.8e-66 256.1 443 40.6
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 1.9e-64 251.1 442 38.7
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.9e-64 251.1 375 43.5
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.4e-64 250.8 423 40.7
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 4.2e-64 250.0 442 38.5
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 7.1e-64 249.2 442 38.2
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.2e-63 248.4 467 37.9
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 1.6e-63 248.1 487 37.8
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.8e-62 244.6 428 38.3
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 2.3e-62 244.2 439 39.2
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 2.3e-62 244.2 449 39.4
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 5.1e-62 243.0 439 39.2
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 1.9e-61 241.1 453 38.6
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 1.4e-59 235.0 433 36.3
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 1.2e-58 231.9 161 72.0
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 1.3e-57 228.4 373 37.8
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 1.7e-57 228.0 482 36.1
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 1.9e-56 224.6 406 37.2
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 4.6e-55 219.9 446 35.7
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 6.0e-55 219.5 387 40.8
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 5.1e-54 216.5 388 35.6
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 5.7e-53 213.0 419 37.7
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.9e-48 198.0 407 34.4
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.6e-44 184.9 411 35.5
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 1.6e-44 184.9 150 60.0
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 2.5e-40 171.0 263 41.4
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 9.4e-40 169.1 395 31.6
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.1e-39 167.9 217 46.1
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.7e-37 159.8 293 37.2
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.7e-36 157.1 403 31.0
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 2.0e-34 151.4 240 39.2
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 2.0e-34 151.4 189 51.9
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 4.5e-34 150.2 92 80.4
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 8.5e-33 146.0 108 62.0
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.1e-31 141.4 259 39.4
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 4.5e-26 123.6 190 41.6
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 2.2e-25 121.3 188 38.3
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 2.9e-25 120.9 188 38.3
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.5e-25 119.8 267 36.0
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.5e-24 118.6 160 46.9
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 4.0e-22 110.5 165 43.6
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 9.7e-21 105.9 219 36.1
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 4.5e-18 97.1 158 43.0
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 7.7e-18 96.3 313 29.1
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 1.7e-17 95.1 60 75.0
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.1e-16 92.4 65 63.1
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.5e-16 92.0 117 38.5
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 9.4e-16 89.4 110 53.6
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 1.4e-14 85.5 112 42.0
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 3.0e-14 84.3 385 25.5
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 3.0e-14 84.3 59 66.1
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 2.6e-13 81.3 132 43.2
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.5e-13 79.7 61 63.9
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 9.8e-13 79.3 143 38.5
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.7e-12 78.6 153 33.3
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.8e-12 77.8 128 44.5
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 3.7e-12 77.4 193 26.4
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 6.3e-12 76.6 324 25.3
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 1.1e-11 75.9 123 35.8
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 2.4e-11 74.7 95 49.5
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 9.1e-11 72.8 61 57.4
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 9.1e-11 72.8 56 64.3
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 2.7e-10 71.2 60 55.0
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 3.5e-10 70.9 81 53.1
Lsat_1_v5_gn_1_5801 Lactuca sativa HOM05D003798 ORTHO05D004652 5.9e-10 70.1 84 53.6
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.7e-09 68.6 40 80.0
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.7e-09 68.6 208 29.8
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 2.9e-09 67.8 123 34.1
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 4.2e-08 63.9 82 47.6
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 8.0e-07 59.7 84 47.6
Lsat_1_v5_gn_8_129341 Lactuca sativa HOM05D003798 ORTHO05D004652 6.8e-06 56.6 94 42.6


User provided reference genes

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