Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 3.0e-70 268.5 140 100.0
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 6.9e-35 151.0 147 65.3
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 6.7e-30 134.4 149 59.7
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 6.7e-30 134.4 146 61.6
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 5.3e-27 124.8 132 57.6
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.7e-25 119.8 138 55.1
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 6.4e-25 117.9 146 49.3
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.1e-24 117.1 141 54.6
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 3.2e-24 115.5 127 63.0
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 4.2e-24 115.2 141 53.2
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 2.1e-23 112.8 142 50.7
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 2.1e-23 112.8 141 54.6
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 1.8e-22 109.8 141 51.8
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 8.7e-22 107.5 141 50.4
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 8.7e-22 107.5 141 51.1
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 4.3e-21 105.1 141 49.6
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 7.4e-21 104.4 141 51.1
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 2.8e-20 102.4 141 51.8
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 3.7e-20 102.1 140 47.1
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 3.7e-20 102.1 135 51.9
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 4.8e-20 101.7 144 50.0
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 6.2e-20 101.3 139 47.5
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 6.2e-20 101.3 140 48.6
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 8.1e-20 100.9 143 47.6
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 4.0e-19 98.6 140 47.1
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 4.0e-19 98.6 136 49.3
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 5.8e-18 94.7 137 48.9
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 5.8e-18 94.7 147 46.9
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 5.8e-18 94.7 147 46.9
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 5.8e-18 94.7 142 47.2
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 7.6e-18 94.4 142 47.2
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 7.6e-18 94.4 142 47.2
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.7e-17 93.2 151 47.7
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 2.9e-17 92.4 140 50.0
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 3.8e-17 92.0 140 47.9
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 8.4e-17 90.9 98 56.1
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 8.4e-17 90.9 140 47.1
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 8.4e-17 90.9 144 47.9
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.4e-16 90.1 146 45.2
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 2.5e-16 89.4 95 55.8
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 3.2e-16 89.0 151 43.0
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 4.2e-16 88.6 91 54.9
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 4.2e-16 88.6 102 50.0
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 7.1e-16 87.8 143 46.2
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 1.2e-15 87.0 141 46.1
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 1.2e-15 87.0 83 59.0
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 1.0e-14 84.0 87 55.2
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.8e-14 83.2 99 49.5
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 3.0e-14 82.4 134 39.6
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 6.7e-14 81.3 118 49.2
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 6.7e-14 81.3 141 41.1
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 1.5e-13 80.1 136 42.6
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 1.9e-13 79.7 98 48.0
Prupe.3G008700 Prunus persica HOM05D006547 ORTHO05D008112 1.9e-13 79.7 139 41.0
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 4.3e-13 78.6 83 59.0
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 7.4e-13 77.8 75 53.3
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 7.4e-13 77.8 134 39.6
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 9.6e-13 77.4 94 58.5
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 1.6e-12 76.6 52 75.0
Hma1.2p1_0408F.1_g146550 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 1.6e-12 76.6 82 61.0
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 1.6e-12 76.6 148 39.2
Dinv10120 Davidia involucrata HOM05D006547 ORTHO05D008112 2.1e-12 76.3 107 49.5
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 2.1e-12 76.3 76 56.6
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 2.8e-12 75.9 89 56.2
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 4.8e-12 75.1 105 42.9
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 6.3e-12 74.7 94 50.0
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 8.2e-12 74.3 95 53.7
PSO210G6541 Papaver somniferum HOM05D006547 ORTHO05D008112 8.2e-12 74.3 122 42.6
Actinidia25863 Actinidia chinensis HOM05D006547 ORTHO05D008112 1.1e-11 73.9 137 43.1
MD17G1278000 Malus domestica HOM05D006547 ORTHO05D008112 1.1e-11 73.9 143 38.5
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 1.1e-11 73.9 125 41.6
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 1.4e-11 73.6 74 52.7
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 1.8e-11 73.2 133 41.4
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 3.1e-11 72.4 60 61.7
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 3.1e-11 72.4 84 44.0
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 6.9e-11 71.2 60 60.0
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 6.9e-11 71.2 111 45.9
Nn3g21744 Nelumbo nucifera HOM05D006547 ORTHO05D008112 6.9e-11 71.2 141 40.4
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 6.9e-11 71.2 93 50.5
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 1.2e-10 70.5 60 58.3
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 1.2e-10 70.5 60 58.3
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 2.6e-10 69.3 80 48.8
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 2.6e-10 69.3 80 48.8
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 3.4e-10 68.9 56 60.7
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 3.4e-10 68.9 60 56.7
MELO3C012934.2 Cucumis melo HOM05D006547 ORTHO05D008112 3.4e-10 68.9 68 51.5
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 4.5e-10 68.6 125 38.4
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 4.5e-10 68.6 56 60.7
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 4.5e-10 68.6 84 46.4
Thhalv10001736m.g Eutrema salsugineum HOM05D006547 ORTHO05D008112 4.5e-10 68.6 84 46.4
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 5.9e-10 68.2 75 50.7
Ciclev10006764m.g Citrus clementina HOM05D006547 ORTHO05D008112 5.9e-10 68.2 68 52.9
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 5.9e-10 68.2 107 43.9
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 7.6e-10 67.8 80 47.5
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 7.6e-10 67.8 84 45.2
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 7.6e-10 67.8 84 45.2
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 7.6e-10 67.8 84 45.2
Sp4g29240 Schrenkiella parvula HOM05D006547 ORTHO05D008112 7.6e-10 67.8 84 45.2
Sopen06g004170 Solanum pennellii HOM05D006547 ORTHO05D008112 7.6e-10 67.8 93 48.4
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 7.6e-10 67.8 79 49.4
CsaV3_3G026610 Cucumis sativus L. HOM05D006547 ORTHO05D008112 1.0e-09 67.4 68 50.0
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.0e-09 67.4 63 60.3
ClCG10G011560 Citrullus lanatus HOM05D006547 ORTHO05D008112 1.3e-09 67.0 52 59.6
Solyc06g009510.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 1.3e-09 67.0 93 48.4
Lsat_1_v5_gn_9_4661 Lactuca sativa HOM05D006547 ORTHO05D008112 2.2e-09 66.2 118 41.5
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 3.8e-09 65.5 102 44.1
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 5.0e-09 65.1 93 46.2
Aa31LG1G28590 Aethionema arabicum HOM05D006547 ORTHO05D008112 6.5e-09 64.7 62 56.5
Sed0017392 Sechium edule HOM05D006547 ORTHO05D008112 6.5e-09 64.7 93 44.1
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 8.5e-09 64.3 84 44.0
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 1.9e-08 63.2 89 47.2
BcaB06g29454 Brassica carinata HOM05D006547 ORTHO05D008112 3.2e-08 62.4 61 54.1
ECA247G3592 Erigeron canadensis HOM05D006547 ORTHO05D008112 3.2e-08 62.4 163 38.7
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 3.2e-08 62.4 90 45.6
A04p34890 Brassica napus HOM05D006547 ORTHO05D008112 4.2e-08 62.0 85 43.5
BraSC79t46680Z Brassica rapa HOM05D006547 ORTHO05D008112 4.2e-08 62.0 85 43.5
Nitab4.5_0000222g0070 Nicotiana tabacum HOM05D006547 ORTHO05D008112 4.2e-08 62.0 55 56.4
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 7.2e-08 61.2 57 56.1
Sc17g0000340 Simmondsia chinensis HOM05D006547 ORTHO05D008112 7.2e-08 61.2 130 38.5
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 9.3e-08 60.8 74 48.6
Sopen01g031050 Solanum pennellii HOM05D006547 ORTHO05D008112 9.3e-08 60.8 80 41.2
PGSC0003DMG400009058 Solanum tuberosum HOM05D006547 ORTHO05D008112 9.3e-08 60.8 80 40.0
Solyc01g079270.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 1.6e-07 60.1 90 38.9
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 4.6e-07 58.5 47 57.4
C04p72660 Brassica napus HOM05D006547 ORTHO05D008112 6.1e-07 58.2 88 42.0
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 6.1e-07 58.2 47 55.3
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 5.1e-06 55.1 47 51.1
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 6.7e-06 54.7 64 48.4


User provided reference genes

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