Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 3.7e-266 921.0 469 100.0
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 8.6e-215 750.4 495 80.2
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 2.0e-211 739.2 471 80.9
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 6.2e-205 717.6 470 78.9
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 4.9e-202 708.0 471 77.9
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 4.9e-202 708.0 470 78.1
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 4.9e-202 708.0 471 78.6
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 5.4e-201 704.5 470 77.2
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 5.4e-201 704.5 470 77.0
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 1.1e-198 696.8 470 77.0
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 2.5e-198 695.7 472 76.7
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 3.3e-198 695.3 472 77.3
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 5.6e-198 694.5 470 77.7
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 9.5e-198 693.7 470 76.6
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.8e-196 689.5 470 75.5
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 3.1e-196 688.7 470 75.5
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 3.1e-196 688.7 470 75.7
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.2e-195 686.8 470 75.3
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 9.9e-195 683.7 435 82.1
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.7e-194 682.9 470 74.7
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 6.4e-194 681.0 470 75.3
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 6.4e-194 681.0 470 74.9
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 9.2e-193 677.2 470 74.5
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.1e-190 670.2 471 76.2
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 4.3e-190 668.3 472 75.0
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.0e-187 659.4 471 73.0
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 4.4e-187 658.3 470 73.8
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 7.6e-187 657.5 471 73.5
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 4.9e-186 654.8 471 73.0
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 2.1e-184 649.4 471 72.2
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 2.7e-184 649.0 471 72.6
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 4.6e-184 648.3 470 72.6
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 1.0e-183 647.1 471 73.0
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 3.0e-183 645.6 488 71.5
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 3.0e-183 645.6 470 71.9
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 3.9e-183 645.2 470 72.1
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 5.1e-183 644.8 471 73.5
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 6.6e-183 644.4 471 71.8
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 5.6e-182 641.3 470 73.0
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 7.3e-182 641.0 491 69.0
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 3.6e-181 638.6 489 71.0
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 5.8e-179 631.3 471 69.9
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 1.7e-178 629.8 474 70.9
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 2.9e-178 629.0 473 70.8
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 3.8e-178 628.6 473 70.6
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 4.2e-177 625.2 521 65.5
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 7.1e-177 624.4 473 70.6
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 9.3e-177 624.0 531 66.3
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 1.6e-176 623.2 474 70.5
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 1.5e-174 616.7 471 69.6
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 2.5e-174 615.9 473 69.6
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 1.6e-173 613.2 471 70.7
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 3.6e-173 612.1 489 68.7
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 1.1e-172 610.5 474 70.5
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 5.3e-172 608.2 479 69.3
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 4.9e-170 601.7 479 67.2
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 8.7e-167 590.9 481 66.3
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 2.1e-165 586.3 515 62.7
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 3.7e-165 585.5 497 64.4
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 6.2e-165 584.7 499 62.9
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 1.7e-162 576.6 511 64.4
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 1.0e-159 567.4 503 61.8
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 1.6e-157 560.1 484 63.8
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 2.8e-157 559.3 467 66.6
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 2.9e-154 549.3 472 64.2
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 8.4e-154 547.7 494 63.0
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 2.3e-151 539.7 515 59.6
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 5.1e-151 538.5 485 63.3
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.6e-149 533.5 501 58.7
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 3.1e-148 529.3 482 60.6
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 4.5e-147 525.4 490 60.8
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 1.4e-145 520.4 485 64.3
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 3.6e-144 515.8 469 61.0
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 6.1e-144 515.0 471 61.6
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 1.8e-143 513.5 483 60.5
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 1.8e-143 513.5 357 75.6
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 3.9e-143 512.3 484 61.4
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 8.8e-143 511.1 473 61.3
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 2.5e-142 509.6 484 61.2
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 9.7e-142 507.7 483 59.6
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 9.7e-142 507.7 368 73.1
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 1.1e-140 504.2 485 60.2
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 1.4e-140 503.8 549 56.1
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 1.8e-140 503.4 483 60.0
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 2.4e-140 503.1 492 59.8
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 3.4e-139 499.2 549 55.7
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 5.9e-139 498.4 356 72.8
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 1.7e-138 496.9 485 57.9
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.9e-138 496.1 425 65.4
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 5.0e-138 495.4 533 54.8
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 2.5e-137 493.0 555 53.7
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 5.5e-137 491.9 486 60.1
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 2.6e-131 473.0 556 50.7
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 1.3e-130 470.7 499 56.3
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 2.2e-130 469.9 440 61.1
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 2.9e-130 469.5 509 55.0
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 6.5e-130 468.4 493 57.2
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 4.2e-129 465.7 518 53.7
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 4.2e-129 465.7 476 56.9
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 2.7e-128 463.0 514 53.9
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 1.1e-126 457.6 493 55.8
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 3.3e-126 456.1 492 56.3
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 5.7e-126 455.3 487 59.8
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 1.1e-121 441.0 322 72.4
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 4.2e-121 439.1 323 72.1
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 1.8e-116 423.7 441 55.8
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 4.4e-110 402.5 252 85.7
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 4.0e-79 299.7 361 49.0
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.2e-78 298.1 219 70.8
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 8.1e-72 275.4 254 60.2
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 1.4e-71 274.6 264 57.6
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 1.3e-69 268.1 220 65.0
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 6.4e-69 265.8 174 74.7
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 1.9e-68 264.2 220 64.1
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 1.9e-65 254.2 219 63.0
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 7.6e-62 242.3 365 43.6
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 1.3e-61 241.5 492 37.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.4e-52 210.7 529 34.0
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.1e-47 195.3 470 33.0
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 3.1e-47 193.7 436 37.2
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 4.0e-47 193.4 517 33.8
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 7.4e-41 172.6 184 52.7
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.5e-38 164.9 482 32.8
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 1.4e-36 158.3 161 54.0
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.3e-34 151.8 429 33.1
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 8.7e-34 149.1 103 70.9
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.1e-31 142.1 136 57.4
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 4.1e-31 140.2 504 30.4
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 1.1e-28 132.1 463 29.4
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.8e-24 117.5 114 57.0
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 2.1e-19 101.3 81 66.7
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 4.7e-11 73.6 91 53.8
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 5.2e-10 70.1 41 78.0
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 7.5e-09 66.2 116 37.9
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 4.1e-07 60.5 156 31.4
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.3e-07 60.1 164 31.7
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 5.3e-07 60.1 164 31.7
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 9.1e-07 59.3 98 38.8
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 1.2e-06 58.9 149 32.9
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.6e-06 58.5 152 38.2
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 2.7e-06 57.8 178 30.3
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 3.5e-06 57.4 120 35.8
C06p28210 Brassica napus HOM05D005852 ORTHO05D041612 4.5e-06 57.0 58 58.6
BolC6t37987H Brassica oleracea HOM05D005852 ORTHO05D041612 4.5e-06 57.0 58 58.6
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 4.5e-06 57.0 176 30.1
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 4.5e-06 57.0 169 33.7
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 7.7e-06 56.2 160 30.6


User provided reference genes

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