Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 7.1e-51 203.8 112 100.0
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 4.1e-22 108.2 103 68.0
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 7.7e-21 104.0 103 65.0
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 1.7e-20 102.8 100 69.0
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 3.2e-19 98.6 99 65.7
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 3.2e-19 98.6 99 67.7
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 5.5e-19 97.8 97 62.9
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 7.2e-19 97.4 98 64.3
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 3.6e-18 95.1 98 64.3
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 3.6e-18 95.1 96 64.6
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 4.7e-18 94.7 99 68.7
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 6.1e-18 94.4 98 63.3
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 8.0e-18 94.0 98 63.3
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.0e-17 93.6 94 69.1
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 1.0e-17 93.6 97 62.9
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 2.3e-17 92.4 102 62.7
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 3.0e-17 92.0 98 62.2
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 3.0e-17 92.0 96 62.5
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 4.0e-17 91.7 98 62.2
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 4.0e-17 91.7 97 62.9
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 4.0e-17 91.7 98 63.3
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 5.2e-17 91.3 95 62.1
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 1.2e-16 90.1 99 62.6
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.0e-16 89.4 98 59.2
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 2.0e-16 89.4 96 59.4
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 2.6e-16 89.0 89 59.6
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 3.3e-16 88.6 102 59.8
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 4.4e-16 88.2 99 60.6
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 7.5e-16 87.4 98 60.2
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 9.7e-16 87.0 98 60.2
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 9.7e-16 87.0 101 59.4
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 9.7e-16 87.0 98 61.2
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 1.3e-15 86.7 100 55.0
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 1.3e-15 86.7 101 59.4
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 1.3e-15 86.7 101 59.4
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 1.3e-15 86.7 102 58.8
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.7e-15 86.3 104 58.7
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.7e-15 86.3 98 59.2
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.7e-15 86.3 98 59.2
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.7e-15 86.3 98 59.2
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 1.7e-15 86.3 94 55.3
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.7e-15 86.3 97 60.8
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 2.2e-15 85.9 98 58.2
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 2.2e-15 85.9 96 60.4
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 2.8e-15 85.5 101 58.4
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 4.8e-15 84.7 90 61.1
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 6.3e-15 84.3 96 58.3
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 6.3e-15 84.3 102 56.9
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 8.2e-15 84.0 101 55.4
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.1e-14 83.6 98 59.2
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 1.4e-14 83.2 98 59.2
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 1.4e-14 83.2 98 60.2
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 1.4e-14 83.2 98 56.1
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 1.8e-14 82.8 99 60.6
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 1.8e-14 82.8 99 57.6
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 1.8e-14 82.8 98 60.2
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 2.4e-14 82.4 98 59.2
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 3.1e-14 82.0 102 55.9
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 3.1e-14 82.0 99 53.5
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 4.1e-14 81.6 96 54.2
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 4.1e-14 81.6 96 54.2
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 4.1e-14 81.6 101 50.5
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 4.1e-14 81.6 101 50.5
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 5.3e-14 81.3 101 53.5
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 9.1e-14 80.5 96 53.1
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.2e-13 80.1 98 58.2
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 2.0e-13 79.3 98 53.1
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 2.7e-13 79.0 92 59.8
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 2.7e-13 79.0 98 53.1
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 3.5e-13 78.6 97 53.6
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 4.5e-13 78.2 98 60.2
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 4.5e-13 78.2 82 59.8
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 5.9e-13 77.8 98 59.2
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 5.9e-13 77.8 98 59.2
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 5.9e-13 77.8 98 59.2
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 5.9e-13 77.8 98 54.1
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 5.9e-13 77.8 98 54.1
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 5.9e-13 77.8 101 49.5
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 5.9e-13 77.8 101 50.5
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 7.7e-13 77.4 84 58.3
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 7.7e-13 77.4 98 55.1
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 1.3e-12 76.6 96 52.1
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.3e-12 76.6 104 52.9
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 2.2e-12 75.9 55 72.7
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 2.2e-12 75.9 96 58.3
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 2.2e-12 75.9 61 70.5
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 2.9e-12 75.5 92 50.0
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 8.5e-12 73.9 91 48.4
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 1.5e-11 73.2 98 51.0
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 1.9e-11 72.8 48 77.1
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 2.5e-11 72.4 69 60.9
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 7.2e-11 70.9 98 52.0
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.2e-10 70.1 85 52.9
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 2.7e-10 68.9 97 49.5
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 2.7e-10 68.9 102 48.0
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 3.6e-10 68.6 79 59.5
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 3.6e-10 68.6 87 51.7
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 3.6e-10 68.6 45 77.8
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 1.0e-09 67.0 62 59.7
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 8.8e-09 63.9 101 46.5
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 1.5e-08 63.2 102 52.0
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 2.0e-08 62.8 83 54.2
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 2.0e-08 62.8 76 55.3
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 2.0e-08 62.8 42 71.4
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 3.4e-08 62.0 85 49.4
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 3.4e-08 62.0 98 45.9
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 4.4e-08 61.6 77 58.4
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 5.7e-08 61.2 93 46.2
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 5.7e-08 61.2 29 100.0
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 9.8e-08 60.5 91 47.3
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 9.8e-08 60.5 85 54.1
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 9.8e-08 60.5 80 50.0
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 1.3e-07 60.1 103 47.6
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 1.7e-07 59.7 44 65.9


User provided reference genes

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