Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p017915 Quercus lobata HOM05D006617 ORTHO05D008247 3.6e-163 578.2 290 100.0
CiPaw.11G138400 Carya illinoinensis HOM05D006617 ORTHO05D008247 1.1e-116 423.7 297 75.4
Prupe.5G095100 Prunus persica HOM05D006617 ORTHO05D008247 2.4e-106 389.4 274 70.8
GSVIVG01019803001 Vitis vinifera HOM05D006617 ORTHO05D008247 6.9e-106 387.9 296 68.2
Actinidia14540 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.0e-104 384.0 276 68.8
Atru.chr6.3216 Acer truncatum HOM05D006617 ORTHO05D008247 6.1e-102 374.8 289 68.5
RcHm_v2.0_Chr7g0198641 Rosa chinensis HOM05D006617 ORTHO05D008247 5.1e-101 371.7 294 66.0
Ciclev10016122m.g Citrus clementina HOM05D006617 ORTHO05D008247 1.6e-99 366.7 295 65.4
MD06G1077000 Malus domestica HOM05D006617 ORTHO05D008247 3.7e-99 365.5 271 66.8
Dinv38979 Davidia involucrata HOM05D006617 ORTHO05D008247 8.2e-99 364.4 228 77.6
CSS0023405 Camellia sinensis var. sinensis HOM05D006617 ORTHO05D008247 1.4e-98 363.6 264 67.8
FAN04G2914 Fragaria x ananassa HOM05D006617 ORTHO05D008247 3.1e-98 362.5 272 66.2
TWI36G1290 Tripterygium wilfordii HOM05D006617 ORTHO05D008247 9.0e-98 360.9 291 66.3
Eucgr.D01883 Eucalyptus grandis HOM05D006617 ORTHO05D008247 3.4e-97 359.0 299 64.2
CsaV3_4G006040 Cucumis sativus L. HOM05D006617 ORTHO05D008247 4.5e-97 358.6 290 64.1
Sed0011813 Sechium edule HOM05D006617 ORTHO05D008247 2.2e-96 356.3 290 63.4
FAN13G2116 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.1e-95 354.0 266 66.2
Hma1.2p1_0514F.1_g169800 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 1.9e-95 353.2 245 71.8
MELO3C016345.2 Cucumis melo HOM05D006617 ORTHO05D008247 4.2e-95 352.1 290 63.1
Potri.014G154900 Populus trichocarpa HOM05D006617 ORTHO05D008247 4.2e-95 352.1 269 66.2
Nn6g33542 Nelumbo nucifera HOM05D006617 ORTHO05D008247 2.1e-94 349.7 269 65.8
Lj8A235T58 Lonicera japonica HOM05D006617 ORTHO05D008247 3.6e-94 349.0 252 67.9
Manes.12G073000 Manihot esculenta HOM05D006617 ORTHO05D008247 4.6e-94 348.6 242 71.1
arahy.Tifrunner.gnm1.ann1.164QK4 Arachis hypogaea HOM05D006617 ORTHO05D008247 1.0e-93 347.4 245 69.8
arahy.Tifrunner.gnm1.ann1.90PEWX Arachis hypogaea HOM05D006617 ORTHO05D008247 1.0e-93 347.4 245 69.8
Cpa.g.sc39.21 Carica papaya HOM05D006617 ORTHO05D008247 2.3e-93 346.3 313 58.8
Glyma.05G205300 Glycine max HOM05D006617 ORTHO05D008247 3.3e-92 342.4 254 66.5
COL.COLO4_11251 Corchorus olitorius HOM05D006617 ORTHO05D008247 4.4e-92 342.0 248 67.3
Lj4g0017727 Lotus japonicus HOM05D006617 ORTHO05D008247 4.4e-92 342.0 280 63.6
Lalb_Chr05g0224971 Lupinus albus HOM05D006617 ORTHO05D008247 2.2e-91 339.7 291 61.5
Medtr8g096960 Medicago truncatula HOM05D006617 ORTHO05D008247 2.2e-91 339.7 279 60.6
Phvul.002G287200 Phaseolus vulgaris HOM05D006617 ORTHO05D008247 2.8e-91 339.3 245 66.9
THA.LOC104800995 Tarenaya hassleriana HOM05D006617 ORTHO05D008247 1.8e-90 336.7 282 62.1
TPR.G12841 Trifolium pratense HOM05D006617 ORTHO05D008247 3.1e-90 335.9 255 66.7
Migut.A00797 Erythranthe guttata HOM05D006617 ORTHO05D008247 6.9e-90 334.7 243 66.3
Glyma.08G012200 Glycine max HOM05D006617 ORTHO05D008247 6.9e-90 334.7 254 65.7
ECA233G3703 Erigeron canadensis HOM05D006617 ORTHO05D008247 2.0e-89 333.2 240 66.7
VMungo0251G0775 Vigna mungo HOM05D006617 ORTHO05D008247 2.6e-89 332.8 245 65.3
PSO478G3588 Papaver somniferum HOM05D006617 ORTHO05D008247 3.4e-89 332.4 255 66.7
Thecc.02G366400 Theobroma cacao HOM05D006617 ORTHO05D008247 5.9e-89 331.6 251 65.7
SalBow6G1063 Salvia bowleyana HOM05D006617 ORTHO05D008247 1.0e-88 330.9 244 64.8
HanXRQChr12g0384501 Helianthus annuus HOM05D006617 ORTHO05D008247 1.3e-88 330.5 248 64.1
Psat7g035840 Pisum sativum HOM05D006617 ORTHO05D008247 1.7e-88 330.1 241 67.6
Lsat_1_v5_gn_6_6941 Lactuca sativa HOM05D006617 ORTHO05D008247 3.8e-88 328.9 245 64.9
Cc08_g14300 Coffea canephora HOM05D006617 ORTHO05D008247 5.0e-88 328.6 223 69.1
FvH4_5g01880 Fragaria vesca HOM05D006617 ORTHO05D008247 5.0e-88 328.6 244 67.6
FAN18G0570 Fragaria x ananassa HOM05D006617 ORTHO05D008247 1.9e-87 326.6 244 67.2
PSO782G1088 Papaver somniferum HOM05D006617 ORTHO05D008247 1.9e-87 326.6 260 64.6
Haze_08908 Corylus avellana HOM05D006617 ORTHO05D008247 3.2e-87 325.9 238 72.3
Duzib251G0852 Durio zibethinus HOM05D006617 ORTHO05D008247 3.2e-87 325.9 245 65.3
Ah.12g057360 Amaranthus hybridus HOM05D006617 ORTHO05D008247 2.1e-86 323.2 247 63.6
Ca_17553_v3 Cicer arietinum L. HOM05D006617 ORTHO05D008247 2.1e-86 323.2 254 63.8
Thhalv10017053m.g Eutrema salsugineum HOM05D006617 ORTHO05D008247 2.1e-86 323.2 280 59.3
Gohir.D12G177000 Gossypium hirsutum HOM05D006617 ORTHO05D008247 2.7e-86 322.8 274 60.6
Gorai.008G189400 Gossypium raimondii HOM05D006617 ORTHO05D008247 2.7e-86 322.8 274 60.6
CAN.G26.17 Capsicum annuum HOM05D006617 ORTHO05D008247 4.7e-86 322.0 243 63.0
FAN08G3651 Fragaria x ananassa HOM05D006617 ORTHO05D008247 6.1e-86 321.6 244 67.2
Sc22g0000340 Simmondsia chinensis HOM05D006617 ORTHO05D008247 6.1e-86 321.6 244 66.0
AL4G27880 Arabidopsis lyrata HOM05D006617 ORTHO05D008247 7.9e-86 321.2 277 59.2
Solyc12g056350.2 Solanum lycopersicum HOM05D006617 ORTHO05D008247 8.8e-85 317.8 290 56.6
Haze_08904 Corylus avellana HOM05D006617 ORTHO05D008247 1.1e-84 317.4 222 73.9
Gohir.A12G174300 Gossypium hirsutum HOM05D006617 ORTHO05D008247 1.5e-84 317.0 274 59.5
Sopen12g028920 Solanum pennellii HOM05D006617 ORTHO05D008247 1.5e-84 317.0 241 63.5
PGSC0003DMG400004251 Solanum tuberosum HOM05D006617 ORTHO05D008247 2.0e-84 316.6 290 56.2
BcaB01g03976 Brassica carinata HOM05D006617 ORTHO05D008247 2.6e-84 316.2 272 57.7
EL10Ac5g12764 Beta vulgaris HOM05D006617 ORTHO05D008247 7.4e-84 314.7 233 67.0
Sabra14G0117100 Salix brachista HOM05D006617 ORTHO05D008247 7.4e-84 314.7 265 61.9
BcaC01g05904 Brassica carinata HOM05D006617 ORTHO05D008247 4.8e-83 312.0 281 57.3
A03p18190 Brassica napus HOM05D006617 ORTHO05D008247 8.2e-83 311.2 281 56.6
Carub.0004s1384 Capsella rubella HOM05D006617 ORTHO05D008247 8.2e-83 311.2 241 61.8
C03p21220 Brassica napus HOM05D006617 ORTHO05D008247 1.8e-82 310.1 281 56.9
BolC3t14504H Brassica oleracea HOM05D006617 ORTHO05D008247 1.8e-82 310.1 281 56.9
BraA03t11079Z Brassica rapa HOM05D006617 ORTHO05D008247 3.1e-82 309.3 280 56.1
Sp4g14850 Schrenkiella parvula HOM05D006617 ORTHO05D008247 3.1e-82 309.3 248 60.5
DCAR_008412 Daucus carota HOM05D006617 ORTHO05D008247 9.1e-82 307.8 248 62.5
TAR375G0379 Trochodendron aralioides HOM05D006617 ORTHO05D008247 3.5e-81 305.8 246 66.3
Aa31LG5G4800 Aethionema arabicum HOM05D006617 ORTHO05D008247 3.8e-80 302.4 250 62.8
PGR031G1807 Punica granatum HOM05D006617 ORTHO05D008247 7.2e-79 298.1 237 67.1
ATR0680G238 Amborella trichopoda HOM05D006617 ORTHO05D008247 7.5e-76 288.1 234 59.4
Hund11496 Selenicereus undatus HOM05D006617 ORTHO05D008247 1.3e-75 287.3 265 59.2
AUR62017243 Chenopodium quinoa HOM05D006617 ORTHO05D008247 1.8e-74 283.5 230 63.0
ClCG07G007980 Citrullus lanatus HOM05D006617 ORTHO05D008247 5.0e-72 275.4 291 53.6
AUR62010601 Chenopodium quinoa HOM05D000030 ORTHO05D008247 8.5e-72 274.6 220 63.6
Os03g0110900 Oryza sativa ssp. japonica HOM05D006617 ORTHO05D008247 2.5e-71 273.1 225 56.9
HPP92_004974 Vanilla planifolia HOM05D006617 ORTHO05D008247 2.5e-71 273.1 225 57.3
Peaxi162Scf01294g00327 Petunia axillaris HOM05D006617 ORTHO05D008247 7.2e-71 271.6 227 59.0
MBI18_g01147_MAGBIO Magnolia biondii HOM05D006617 ORTHO05D008247 4.8e-67 258.8 189 67.2
SGA_v2.0_scaffold146G36248 Striga asiatica HOM05D006617 ORTHO05D008247 2.7e-65 253.1 181 67.4
Zm00001eb404120 Zea mays HOM05D006617 ORTHO05D008247 2.7e-65 253.1 225 52.4
SEGI_22684 Sequoiadendron giganteum HOM05D006617 ORTHO05D008247 1.5e-63 247.3 221 51.6
Actinidia02025 Actinidia chinensis HOM05D006617 ORTHO05D008247 1.2e-62 244.2 181 69.6
Oeu025101.1 Olea europaea HOM05D006617 ORTHO05D008247 3.6e-62 242.7 164 70.7
AT2G32500 Arabidopsis thaliana HOM05D006617 ORTHO05D008247 3.4e-60 236.1 214 60.3
Nitab4.5_0010198g0030 Nicotiana tabacum HOM05D006617 ORTHO05D008247 5.4e-58 228.8 246 50.0
Nitab4.5_0000360g0080 Nicotiana tabacum HOM05D006617 ORTHO05D008247 5.2e-53 212.2 180 58.9
Hma1.2p1_3255F.1_g334560 Hydrangea macrophylla HOM05D006617 ORTHO05D008247 5.4e-50 202.2 199 57.3
Nitab4.5_0029474g0010 Nicotiana tabacum HOM05D006617 ORTHO05D008247 8.6e-48 194.9 136 66.2
SMO329G0076 Selaginella moellendorffii HOM05D006617 ORTHO05D008247 4.7e-46 189.1 228 42.5
Aqoxy7G00382 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 1.8e-45 187.2 132 66.7
Pp3c20_8200 Physcomitrium patens HOM05D006617 ORTHO05D008247 1.2e-44 184.5 221 43.9
CARHR126330 Cardamine hirsuta HOM05D006617 ORTHO05D008247 7.5e-44 181.8 134 62.7
AagrBONN_evm.TU.Sc2ySwM_228.4793 Anthoceros agrestis HOM05D006617 ORTHO05D008247 9.2e-42 174.9 222 41.0
MSTRG.12003 Avicennia marina HOM05D006617 ORTHO05D008247 5.8e-36 155.6 111 66.7
AUR62042944 Chenopodium quinoa HOM05D006617 ORTHO05D008247 1.1e-31 141.4 145 53.8
Aqoxy7G00383 Aquilegia oxysepala HOM05D006617 ORTHO05D008247 2.5e-31 140.2 95 70.5
Mapoly0086s0010 Marchantia polymorpha HOM05D006617 ORTHO05D008247 2.9e-27 126.7 245 31.0
Mapoly0086s0005 Marchantia polymorpha HOM05D006617 ORTHO05D008247 1.2e-25 121.3 217 31.3
Pp3c7_1410 Physcomitrium patens HOM05D006617 ORTHO05D008247 2.1e-25 120.6 204 31.9
Lsat_1_v5_gn_8_1081 Lactuca sativa HOM05D006617 ORTHO05D008247 6.2e-22 109.0 113 54.0
Glyma.05G087800 Glycine max HOM05D006617 ORTHO05D008247 1.3e-19 101.3 73 64.4
CBR_g57728 Chara braunii HOM05D006617 ORTHO05D008247 7.1e-18 95.5 115 42.6
Pp3c8_19270 Physcomitrium patens HOM05D006617 ORTHO05D008247 6.0e-17 92.4 235 27.7
PRCOL_00003136 Prasinoderma coloniale HOM05D006617 ORTHO05D008247 3.9e-16 89.7 204 27.9
AagrBONN_evm.TU.Sc2ySwM_117.2950 Anthoceros agrestis HOM05D006617 ORTHO05D008247 1.3e-14 84.7 228 28.5
MD14G1098400 Malus domestica HOM05D006617 ORTHO05D008247 5.3e-13 79.3 68 61.8
AT2G31670 Arabidopsis thaliana HOM05D003252 ORTHO05D003640 3.5e-09 66.6 225 24.4
CDE06G1437 Ceratophyllum demersum HOM05D006617 ORTHO05D008247 4.6e-09 66.2 73 50.7
Gohir.A07G014600 Gossypium hirsutum HOM05D003252 ORTHO05D003640 7.9e-09 65.5 253 23.7
SMO307G0050 Selaginella moellendorffii HOM05D037974 ORTHO05D008247 7.9e-09 65.5 181 26.5
Pp3c15_7020 Physcomitrium patens HOM05D003252 ORTHO05D003640 3.0e-08 63.5 235 22.6
Thecc.09G079800 Theobroma cacao HOM05D003252 ORTHO05D003640 3.9e-08 63.2 238 23.1
Gorai.009G034900 Gossypium raimondii HOM05D003252 ORTHO05D003640 1.1e-07 61.6 229 25.8
MBI19_g11841_MAGBIO Magnolia biondii HOM05D003252 ORTHO05D003640 1.1e-07 61.6 217 22.1
ATR0377G002 Amborella trichopoda HOM05D003252 ORTHO05D003640 2.5e-07 60.5 212 26.4
AL4G26910 Arabidopsis lyrata HOM05D003252 ORTHO05D003640 4.3e-07 59.7 239 24.3
Gohir.D07G014300 Gossypium hirsutum HOM05D003252 ORTHO05D003640 4.3e-07 59.7 205 24.4
PSO386G0167 Papaver somniferum HOM05D003252 ORTHO05D003640 5.6e-07 59.3 257 23.0
Thhalv10002638m.g Eutrema salsugineum HOM05D003252 ORTHO05D003640 7.4e-07 58.9 276 23.9
Gorai.001G015100 Gossypium raimondii HOM05D003252 ORTHO05D003640 7.4e-07 58.9 140 26.4
Gohir.D05G034500 Gossypium hirsutum HOM05D003252 ORTHO05D003640 1.3e-06 58.2 206 27.2
Ah.09g231370 Amaranthus hybridus HOM05D003252 ORTHO05D003640 1.6e-06 57.8 143 26.6
Eucgr.C03557 Eucalyptus grandis HOM05D003252 ORTHO05D003640 1.6e-06 57.8 192 27.1
CiPaw.03G208300 Carya illinoinensis HOM05D003252 ORTHO05D003640 2.1e-06 57.4 200 26.0
Ciclev10012522m.g Citrus clementina HOM05D003252 ORTHO05D003640 2.1e-06 57.4 221 22.2
CiPaw.04G145000 Carya illinoinensis HOM05D003252 ORTHO05D003640 2.8e-06 57.0 122 28.7
Cfa003021 Carpinus fangiana HOM05D003252 ORTHO05D003640 4.8e-06 56.2 215 25.1
Haze_25978 Corylus avellana HOM05D003252 ORTHO05D003640 8.1e-06 55.5 215 25.1


User provided reference genes

Program Settings