Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p017610 Quercus lobata HOM05D008129 ORTHO05D010232 5.3e-110 401.0 196 100.0
QL12p017600 Quercus lobata HOM05D008129 ORTHO05D010232 1.4e-105 386.3 196 97.4
Haze_08930 Corylus avellana HOM05D008129 ORTHO05D010232 3.1e-65 252.3 194 68.0
CiPaw.11G139400 Carya illinoinensis HOM05D008129 ORTHO05D010232 1.5e-64 250.0 193 66.3
Cfa012120 Carpinus fangiana HOM05D008129 ORTHO05D010232 9.9e-64 247.3 194 66.5
CiPaw.12G097000 Carya illinoinensis HOM05D008129 ORTHO05D010232 1.1e-59 233.8 203 62.6
RcHm_v2.0_Chr7g0198961 Rosa chinensis HOM05D008129 ORTHO05D010232 4.6e-53 211.8 204 57.4
Thecc.03G273100 Theobroma cacao HOM05D008129 ORTHO05D010232 3.0e-52 209.1 195 56.4
Ciclev10022388m.g Citrus clementina HOM05D008129 ORTHO05D010232 7.3e-51 204.5 184 60.3
FvH4_5g01760 Fragaria vesca HOM05D008129 ORTHO05D010232 3.6e-50 202.2 195 55.4
FAN18G4443 Fragaria x ananassa HOM05D008129 ORTHO05D010232 3.6e-50 202.2 195 55.4
MD00G1110200 Malus domestica HOM05D008129 ORTHO05D010232 3.6e-50 202.2 199 55.3
Dinv38993 Davidia involucrata HOM05D008129 ORTHO05D010232 8.1e-50 201.1 194 56.2
Sabra01G0081800 Salix brachista HOM05D008129 ORTHO05D010232 2.4e-49 199.5 180 56.7
FAN13G1875 Fragaria x ananassa HOM05D008129 ORTHO05D010232 4.0e-49 198.7 195 54.9
Gohir.D03G153100 Gossypium hirsutum HOM05D008129 ORTHO05D010232 5.3e-49 198.4 187 54.5
COL.COLO4_05253 Corchorus olitorius HOM05D008129 ORTHO05D010232 1.2e-48 197.2 187 56.1
FAN08G0538 Fragaria x ananassa HOM05D008129 ORTHO05D010232 1.2e-48 197.2 195 54.4
FAN04G1130 Fragaria x ananassa HOM05D008129 ORTHO05D010232 7.6e-48 194.5 195 54.4
Gohir.A03G018500 Gossypium hirsutum HOM05D008129 ORTHO05D010232 1.7e-47 193.4 187 54.0
TAR629G0329 Trochodendron aralioides HOM05D008129 ORTHO05D010232 4.9e-47 191.8 191 52.9
Hma1.2p1_0514F.1_g169980 Hydrangea macrophylla HOM05D008129 ORTHO05D010232 6.4e-47 191.4 203 53.2
Prupe.5G093100 Prunus persica HOM05D008129 ORTHO05D010232 1.1e-46 190.7 195 53.8
MD04G1064800 Malus domestica HOM05D008129 ORTHO05D010232 1.4e-46 190.3 179 55.9
Potri.001G108300 Populus trichocarpa HOM05D008129 ORTHO05D010232 4.2e-46 188.7 179 54.7
CSS0045994 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 1.0e-44 184.1 191 53.4
Gorai.003G160700 Gossypium raimondii HOM05D008129 ORTHO05D010232 3.9e-44 182.2 162 58.0
Manes.01G065300 Manihot esculenta HOM05D008129 ORTHO05D010232 1.5e-43 180.3 195 51.3
AUR62010633 Chenopodium quinoa HOM05D008129 ORTHO05D010232 3.1e-41 172.6 192 49.5
EL10Ac5g12748 Beta vulgaris HOM05D008129 ORTHO05D010232 1.7e-39 166.8 189 49.2
CSS0008314 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 3.8e-39 165.6 197 48.7
Lj2P194T38 Lonicera japonica HOM05D008129 ORTHO05D010232 1.9e-38 163.3 183 49.7
SGA_v2.0_scaffold144G35967 Striga asiatica HOM05D008129 ORTHO05D010232 1.0e-36 157.5 198 45.5
Rhsim07G0093300 Rhododendron simsii HOM05D008129 ORTHO05D010232 2.3e-36 156.4 201 48.3
Cc08_g14170 Coffea canephora HOM05D008129 ORTHO05D010232 1.3e-34 150.6 198 48.0
Oeu029783.1 Olea europaea HOM05D008129 ORTHO05D010232 4.8e-34 148.7 188 44.7
Migut.E01284 Erythranthe guttata HOM05D008129 ORTHO05D010232 1.1e-33 147.5 176 46.0
Nn6g34205 Nelumbo nucifera HOM05D008129 ORTHO05D010232 3.4e-32 142.5 203 42.4
Lalb_Chr09g0333221 Lupinus albus HOM05D008129 ORTHO05D010232 3.2e-30 136.0 185 42.2
ECA246G2221 Erigeron canadensis HOM05D008129 ORTHO05D010232 9.3e-30 134.4 164 45.7
Medtr8g096860 Medicago truncatula HOM05D008129 ORTHO05D010232 1.2e-29 134.0 175 45.1
TAR375G1113 Trochodendron aralioides HOM05D008129 ORTHO05D010232 1.0e-28 131.0 136 48.5
SGA_v2.0_scaffold385G50459 Striga asiatica HOM05D008129 ORTHO05D010232 3.7e-26 122.5 128 48.4
Glyma.11G025800 Glycine max HOM05D008129 ORTHO05D010232 2.4e-25 119.8 176 44.3
VMungo1215G1765 Vigna mungo HOM05D008129 ORTHO05D010232 2.4e-25 119.8 175 43.4
TPR.G12796 Trifolium pratense HOM05D000268 ORTHO05D000261 3.1e-25 119.4 180 40.6
Psat7g036080 Pisum sativum HOM05D008129 ORTHO05D010232 9.0e-25 117.9 177 42.4
CsaV3_5G003170 Cucumis sativus L. HOM05D008129 ORTHO05D010232 4.5e-24 115.5 183 39.9
Thecc.03G273000 Theobroma cacao HOM05D008129 ORTHO05D010232 5.8e-24 115.2 163 43.6
Nitab4.5_0003924g0090 Nicotiana tabacum HOM05D008129 ORTHO05D010232 1.9e-22 110.2 155 38.1
Phvul.002G155100 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 2.5e-22 109.8 178 41.6
MELO3C005638.2 Cucumis melo HOM05D008129 ORTHO05D010232 7.1e-22 108.2 186 37.1
Eucgr.E00553 Eucalyptus grandis HOM05D008129 ORTHO05D010232 2.1e-21 106.7 161 41.0
Gorai.003G160800 Gossypium raimondii HOM05D008129 ORTHO05D010232 2.1e-21 106.7 175 40.6
Phvul.002G286400 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 1.3e-20 104.0 182 37.4
Gohir.D03G153200 Gossypium hirsutum HOM05D008129 ORTHO05D010232 1.8e-20 103.6 156 39.7
COL.COLO4_05254 Corchorus olitorius HOM05D008129 ORTHO05D010232 6.7e-20 101.7 188 35.1
PGSC0003DMG400003052 Solanum tuberosum HOM05D008129 ORTHO05D010232 5.7e-19 98.6 189 33.9
Gohir.A03G018400 Gossypium hirsutum HOM05D008129 ORTHO05D010232 7.4e-19 98.2 175 36.0
Lj2g0000650 Lotus japonicus HOM05D008129 ORTHO05D010232 9.7e-19 97.8 180 38.9
Eucgr.D01909 Eucalyptus grandis HOM05D008129 ORTHO05D010232 1.3e-18 97.4 170 34.1
Solyc08g080530.1 Solanum lycopersicum HOM05D008129 ORTHO05D010232 1.3e-18 97.4 158 36.1
ClCG01G003050 Citrullus lanatus HOM05D008129 ORTHO05D010232 2.1e-13 80.1 177 34.5
Lsat_1_v5_gn_3_8420 Lactuca sativa HOM05D008129 ORTHO05D010232 7.9e-13 78.2 79 53.2
Dinv37674 Davidia involucrata HOM05D008129 ORTHO05D010232 5.1e-12 75.5 61 62.3
vmacro00355 Vaccinium macrocarpon HOM05D001075 ORTHO05D001779 3.3e-11 72.8 82 50.0
THA.LOC104802020 Tarenaya hassleriana HOM05D002113 ORTHO05D002124 6.3e-10 68.6 154 32.5
AUR62017276 Chenopodium quinoa HOM05D008129 ORTHO05D010232 8.2e-10 68.2 83 45.8
Oeu062744.1 Olea europaea HOM05D008129 ORTHO05D010232 1.1e-09 67.8 84 45.2
THA.LOC104817276 Tarenaya hassleriana HOM05D002113 ORTHO05D002124 2.0e-08 63.5 154 30.5
Aqoxy7G00401 Aquilegia oxysepala HOM05D002113 ORTHO05D002124 2.6e-08 63.2 171 31.6
Peaxi162Scf00233g00082 Petunia axillaris HOM05D002113 ORTHO05D002124 2.9e-07 59.7 177 28.2
Prupe.2G157300 Prunus persica HOM05D002113 ORTHO05D002124 2.9e-07 59.7 178 30.9
SEGI_31534 Sequoiadendron giganteum HOM05D001109 ORTHO05D002124 3.8e-07 59.3 86 37.2
QL09p014635 Quercus lobata HOM05D002113 ORTHO05D002124 5.0e-07 58.9 158 29.1
MD01G1049300 Malus domestica HOM05D002113 ORTHO05D002124 6.5e-07 58.5 177 29.4
PSO478G4233 Papaver somniferum HOM05D002113 ORTHO05D002124 6.5e-07 58.5 154 31.8
TWI23G0711 Tripterygium wilfordii HOM05D002113 ORTHO05D002124 1.4e-06 57.4 158 29.7
Nitab4.5_0006421g0020 Nicotiana tabacum HOM05D002113 ORTHO05D002124 1.9e-06 57.0 122 30.3
Oeu033966.1 Olea europaea HOM05D002113 ORTHO05D002124 1.9e-06 57.0 181 29.3
Nn1g01400 Nelumbo nucifera HOM05D002113 ORTHO05D002124 2.5e-06 56.6 99 39.4
Nitab4.5_0005213g0010 Nicotiana tabacum HOM05D008129 ORTHO05D010232 2.5e-06 56.6 81 39.5
Lalb_Chr17g0339921 Lupinus albus HOM05D002113 ORTHO05D002124 3.2e-06 56.2 186 29.6
Oeu058608.1 Olea europaea HOM05D002113 ORTHO05D002124 3.2e-06 56.2 133 33.1
ECA240G0265 Erigeron canadensis HOM05D002113 ORTHO05D002124 4.2e-06 55.8 98 36.7
Sed0006885 Sechium edule HOM05D002113 ORTHO05D002124 7.2e-06 55.1 194 29.4


User provided reference genes

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