Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p017600 Quercus lobata HOM05D008129 ORTHO05D010232 6.3e-111 404.1 195 100.0
QL12p017610 Quercus lobata HOM05D008129 ORTHO05D010232 2.7e-106 388.7 196 97.4
Haze_08930 Corylus avellana HOM05D008129 ORTHO05D010232 2.1e-66 256.1 193 68.4
CiPaw.11G139400 Carya illinoinensis HOM05D008129 ORTHO05D010232 1.8e-65 253.1 192 66.1
Cfa012120 Carpinus fangiana HOM05D008129 ORTHO05D010232 6.8e-65 251.1 193 66.8
CiPaw.12G097000 Carya illinoinensis HOM05D008129 ORTHO05D010232 8.6e-60 234.2 202 62.4
RcHm_v2.0_Chr7g0198961 Rosa chinensis HOM05D008129 ORTHO05D010232 1.4e-54 216.9 203 58.1
Thecc.03G273100 Theobroma cacao HOM05D008129 ORTHO05D010232 2.3e-52 209.5 194 56.2
Dinv38993 Davidia involucrata HOM05D008129 ORTHO05D010232 1.5e-51 206.8 193 57.0
Ciclev10022388m.g Citrus clementina HOM05D008129 ORTHO05D010232 9.5e-51 204.1 183 60.1
FvH4_5g01760 Fragaria vesca HOM05D008129 ORTHO05D010232 8.1e-50 201.1 194 55.2
FAN18G4443 Fragaria x ananassa HOM05D008129 ORTHO05D010232 8.1e-50 201.1 194 55.2
MD00G1110200 Malus domestica HOM05D008129 ORTHO05D010232 8.1e-50 201.1 203 54.2
Gohir.D03G153100 Gossypium hirsutum HOM05D008129 ORTHO05D010232 3.1e-49 199.1 186 54.3
Sabra01G0081800 Salix brachista HOM05D008129 ORTHO05D010232 3.1e-49 199.1 179 56.4
COL.COLO4_05253 Corchorus olitorius HOM05D008129 ORTHO05D010232 4.0e-49 198.7 186 55.9
FAN13G1875 Fragaria x ananassa HOM05D008129 ORTHO05D010232 8.9e-49 197.6 194 54.6
TAR629G0329 Trochodendron aralioides HOM05D008129 ORTHO05D010232 1.2e-48 197.2 190 53.7
FAN08G0538 Fragaria x ananassa HOM05D008129 ORTHO05D010232 2.6e-48 196.1 194 54.1
Hma1.2p1_0514F.1_g169980 Hydrangea macrophylla HOM05D008129 ORTHO05D010232 4.4e-48 195.3 205 53.7
Gohir.A03G018500 Gossypium hirsutum HOM05D008129 ORTHO05D010232 9.9e-48 194.1 186 53.8
FAN04G1130 Fragaria x ananassa HOM05D008129 ORTHO05D010232 1.7e-47 193.4 194 54.1
Prupe.5G093100 Prunus persica HOM05D008129 ORTHO05D010232 1.4e-46 190.3 194 53.6
Potri.001G108300 Populus trichocarpa HOM05D008129 ORTHO05D010232 5.4e-46 188.3 178 54.5
MD04G1064800 Malus domestica HOM05D008129 ORTHO05D010232 9.2e-46 187.6 178 55.6
CSS0045994 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 2.7e-45 186.0 190 53.7
Gorai.003G160700 Gossypium raimondii HOM05D008129 ORTHO05D010232 2.3e-44 183.0 161 57.8
Manes.01G065300 Manihot esculenta HOM05D008129 ORTHO05D010232 3.3e-43 179.1 194 51.0
AUR62010633 Chenopodium quinoa HOM05D008129 ORTHO05D010232 4.0e-41 172.2 191 49.2
CSS0008314 Camellia sinensis var. sinensis HOM05D008129 ORTHO05D010232 2.2e-39 166.4 198 48.5
Lj2P194T38 Lonicera japonica HOM05D008129 ORTHO05D010232 2.4e-38 162.9 182 49.5
EL10Ac5g12748 Beta vulgaris HOM05D008129 ORTHO05D010232 9.2e-38 161.0 189 48.1
SGA_v2.0_scaffold144G35967 Striga asiatica HOM05D008129 ORTHO05D010232 3.5e-37 159.1 197 45.7
Rhsim07G0093300 Rhododendron simsii HOM05D008129 ORTHO05D010232 7.8e-37 157.9 200 48.5
Migut.E01284 Erythranthe guttata HOM05D008129 ORTHO05D010232 5.6e-35 151.8 183 45.9
Oeu029783.1 Olea europaea HOM05D008129 ORTHO05D010232 5.6e-35 151.8 196 43.4
Cc08_g14170 Coffea canephora HOM05D008129 ORTHO05D010232 1.4e-33 147.1 197 47.2
Nn6g34205 Nelumbo nucifera HOM05D008129 ORTHO05D010232 6.9e-33 144.8 203 42.9
TAR375G1113 Trochodendron aralioides HOM05D008129 ORTHO05D010232 1.1e-30 137.5 135 50.4
Lalb_Chr09g0333221 Lupinus albus HOM05D008129 ORTHO05D010232 4.2e-30 135.6 184 41.8
ECA246G2221 Erigeron canadensis HOM05D008129 ORTHO05D010232 1.2e-29 134.0 163 45.4
Medtr8g096860 Medicago truncatula HOM05D008129 ORTHO05D010232 1.2e-29 134.0 174 44.8
SGA_v2.0_scaffold385G50459 Striga asiatica HOM05D008129 ORTHO05D010232 6.2e-26 121.7 127 48.0
Thecc.03G273000 Theobroma cacao HOM05D008129 ORTHO05D010232 1.8e-25 120.2 162 45.7
TPR.G12796 Trifolium pratense HOM05D000268 ORTHO05D000261 2.4e-25 119.8 179 40.2
CsaV3_5G003170 Cucumis sativus L. HOM05D008129 ORTHO05D010232 3.1e-25 119.4 183 40.4
Glyma.11G025800 Glycine max HOM05D008129 ORTHO05D010232 3.1e-25 119.4 175 44.0
VMungo1215G1765 Vigna mungo HOM05D008129 ORTHO05D010232 4.0e-25 119.0 174 43.1
Psat7g036080 Pisum sativum HOM05D008129 ORTHO05D010232 1.5e-24 117.1 176 42.0
MELO3C005638.2 Cucumis melo HOM05D008129 ORTHO05D010232 3.8e-23 112.5 186 37.6
Nitab4.5_0003924g0090 Nicotiana tabacum HOM05D008129 ORTHO05D010232 6.4e-23 111.7 154 38.3
Eucgr.E00553 Eucalyptus grandis HOM05D008129 ORTHO05D010232 1.4e-22 110.5 160 39.4
Phvul.002G155100 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 4.2e-22 109.0 177 41.2
Gorai.003G160800 Gossypium raimondii HOM05D008129 ORTHO05D010232 1.6e-21 107.1 174 38.5
Gohir.D03G153200 Gossypium hirsutum HOM05D008129 ORTHO05D010232 7.9e-21 104.8 157 40.1
Phvul.002G286400 Phaseolus vulgaris HOM05D008129 ORTHO05D010232 1.0e-20 104.4 181 37.6
COL.COLO4_05254 Corchorus olitorius HOM05D008129 ORTHO05D010232 2.3e-20 103.2 187 35.8
Gohir.A03G018400 Gossypium hirsutum HOM05D008129 ORTHO05D010232 3.9e-20 102.4 175 37.7
PGSC0003DMG400003052 Solanum tuberosum HOM05D008129 ORTHO05D010232 1.9e-19 100.1 194 33.5
Eucgr.D01909 Eucalyptus grandis HOM05D008129 ORTHO05D010232 7.4e-19 98.2 169 34.3
Solyc08g080530.1 Solanum lycopersicum HOM05D008129 ORTHO05D010232 9.6e-19 97.8 164 36.0
Lj2g0000650 Lotus japonicus HOM05D008129 ORTHO05D010232 1.6e-18 97.1 105 49.5
ClCG01G003050 Citrullus lanatus HOM05D008129 ORTHO05D010232 1.1e-14 84.3 177 35.0
Lsat_1_v5_gn_3_8420 Lactuca sativa HOM05D008129 ORTHO05D010232 1.0e-12 77.8 78 52.6
Dinv37674 Davidia involucrata HOM05D008129 ORTHO05D010232 5.1e-12 75.5 61 62.3
vmacro00355 Vaccinium macrocarpon HOM05D001075 ORTHO05D001779 3.3e-11 72.8 82 50.0
THA.LOC104802020 Tarenaya hassleriana HOM05D002113 ORTHO05D002124 7.4e-11 71.6 153 32.7
AUR62017276 Chenopodium quinoa HOM05D008129 ORTHO05D010232 8.2e-10 68.2 83 45.8
Oeu062744.1 Olea europaea HOM05D008129 ORTHO05D010232 1.1e-09 67.8 84 45.2
THA.LOC104817276 Tarenaya hassleriana HOM05D002113 ORTHO05D002124 6.9e-09 65.1 153 30.7
Aqoxy7G00401 Aquilegia oxysepala HOM05D002113 ORTHO05D002124 9.0e-09 64.7 170 31.2
Peaxi162Scf00233g00082 Petunia axillaris HOM05D002113 ORTHO05D002124 2.0e-08 63.5 176 28.4
Prupe.2G157300 Prunus persica HOM05D002113 ORTHO05D002124 1.0e-07 61.2 184 31.0
SEGI_31534 Sequoiadendron giganteum HOM05D001109 ORTHO05D002124 2.9e-07 59.7 86 37.2
Nitab4.5_0006421g0020 Nicotiana tabacum HOM05D002113 ORTHO05D002124 3.8e-07 59.3 170 28.8
QL09p014635 Quercus lobata HOM05D002113 ORTHO05D002124 3.8e-07 59.3 157 29.3
PSO478G4233 Papaver somniferum HOM05D002113 ORTHO05D002124 4.9e-07 58.9 153 32.0
TWI23G0711 Tripterygium wilfordii HOM05D002113 ORTHO05D002124 6.5e-07 58.5 157 30.6
MD01G1049300 Malus domestica HOM05D002113 ORTHO05D002124 1.1e-06 57.8 126 31.0
Nitab4.5_0005213g0010 Nicotiana tabacum HOM05D008129 ORTHO05D010232 1.1e-06 57.8 80 40.0
Oeu033966.1 Olea europaea HOM05D002113 ORTHO05D002124 1.4e-06 57.4 122 32.0
Lalb_Chr17g0339921 Lupinus albus HOM05D002113 ORTHO05D002124 1.9e-06 57.0 185 29.7
Nn1g01400 Nelumbo nucifera HOM05D002113 ORTHO05D002124 2.5e-06 56.6 99 39.4
ECA240G0265 Erigeron canadensis HOM05D002113 ORTHO05D002124 3.2e-06 56.2 98 36.7
Oeu058608.1 Olea europaea HOM05D002113 ORTHO05D002124 3.2e-06 56.2 133 33.1
arahy.Tifrunner.gnm1.ann1.T7PCV6 Arachis hypogaea HOM05D002113 ORTHO05D002124 4.2e-06 55.8 163 31.9


User provided reference genes

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