Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.2e-172 609.8 315 100.0
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.2e-172 609.8 315 100.0
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 3.8e-134 481.9 317 82.3
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 1.0e-126 457.2 265 87.2
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 1.6e-124 449.9 279 81.0
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 2.6e-122 442.6 264 82.2
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 1.1e-120 437.2 269 79.2
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 2.4e-120 436.0 283 78.4
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 4.1e-120 435.3 258 84.1
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 5.4e-120 434.9 283 77.4
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 2.0e-119 433.0 307 71.3
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 2.7e-119 432.6 264 80.3
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 2.3e-118 429.5 264 80.3
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 3.8e-118 428.7 264 79.2
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 3.8e-118 428.7 311 72.0
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.1e-117 427.2 281 77.6
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 2.5e-117 426.0 318 72.6
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 2.5e-117 426.0 289 75.8
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 4.2e-117 425.2 298 73.2
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 5.5e-117 424.9 264 79.9
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 7.2e-117 424.5 314 71.0
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 9.5e-117 424.1 304 72.7
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 1.2e-116 423.7 298 73.5
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 1.2e-116 423.7 276 77.2
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 2.1e-116 422.9 276 76.4
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 2.8e-116 422.5 321 70.4
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 4.7e-116 421.8 290 75.9
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 6.1e-116 421.4 297 73.1
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 8.0e-116 421.0 264 77.7
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 1.0e-115 420.6 276 76.1
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 2.3e-115 419.5 308 72.1
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 4.0e-115 418.7 270 77.8
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 5.2e-115 418.3 268 78.0
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 6.8e-115 417.9 288 74.3
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 8.8e-115 417.5 294 73.1
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 8.8e-115 417.5 263 77.9
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 2.0e-114 416.4 319 69.9
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 3.4e-114 415.6 276 77.5
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 3.4e-114 415.6 270 76.7
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.4e-114 415.2 334 67.1
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 5.7e-114 414.8 334 67.1
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 5.7e-114 414.8 269 78.1
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 9.8e-114 414.1 271 77.5
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 1.3e-113 413.7 283 73.5
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 2.2e-113 412.9 305 70.8
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 3.7e-113 412.1 271 74.9
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 3.7e-113 412.1 270 75.9
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 8.3e-113 411.0 313 69.3
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 2.4e-112 409.5 278 74.8
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 2.4e-112 409.5 264 78.0
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 5.4e-112 408.3 310 67.7
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 7.0e-112 407.9 310 68.1
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 2.7e-111 406.0 295 70.5
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 2.7e-111 406.0 310 67.7
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 4.5e-111 405.2 305 69.2
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 4.5e-111 405.2 295 71.2
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 5.9e-111 404.8 272 71.7
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 1.3e-110 403.7 295 70.2
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.7e-110 403.3 313 69.3
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.3e-110 402.9 267 76.4
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 2.9e-110 402.5 285 69.5
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 5.0e-110 401.7 272 74.6
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 8.6e-110 401.0 298 69.5
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 1.1e-109 400.6 285 70.9
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.5e-109 400.2 289 71.3
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 3.3e-109 399.1 318 66.7
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 4.3e-109 398.7 289 70.9
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 8.0e-108 394.4 291 71.1
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 8.0e-108 394.4 291 71.1
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 8.0e-108 394.4 284 70.4
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 1.4e-107 393.7 293 70.0
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 1.4e-107 393.7 293 70.0
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 1.8e-107 393.3 294 69.7
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 1.8e-107 393.3 308 66.2
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 4.0e-107 392.1 278 71.9
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 4.9e-105 385.2 267 73.4
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 6.4e-105 384.8 230 82.6
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 6.4e-105 384.8 318 63.8
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 1.4e-104 383.6 233 81.1
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 1.4e-104 383.6 285 66.7
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 1.4e-104 383.6 297 66.0
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 9.2e-104 380.9 230 81.7
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-103 380.6 233 79.8
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 1.2e-103 380.6 279 68.8
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 1.2e-103 380.6 269 70.6
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 1.3e-102 377.1 301 64.1
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 1.7e-102 376.7 230 80.0
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 2.3e-102 376.3 304 66.8
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 1.9e-101 373.2 292 67.8
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 3.3e-101 372.5 356 57.3
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 5.6e-101 371.7 267 69.3
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 6.2e-100 368.2 308 65.6
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 1.5e-98 363.6 414 52.2
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 4.4e-98 362.1 266 65.8
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 1.6e-95 353.6 275 67.3
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 7.3e-93 344.7 264 67.0
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 3.4e-90 335.9 272 66.5
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 5.8e-90 335.1 250 64.8
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 4.9e-89 332.0 194 81.4
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 4.6e-87 325.5 249 64.3
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.0e-86 322.8 236 69.9
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 3.3e-85 319.3 252 63.9
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 8.4e-81 304.7 249 67.5
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 7.8e-79 298.1 218 68.8
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 3.4e-74 282.7 228 67.1
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 3.4e-74 282.7 196 67.9
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.1e-72 277.7 211 74.9
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 6.0e-71 271.9 221 66.1
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 5.1e-70 268.9 215 64.7
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 5.3e-67 258.8 190 72.1
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 1.1e-64 251.1 184 71.2
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 4.6e-63 245.7 159 74.2
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 5.1e-62 242.3 218 58.7
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 4.2e-56 222.6 130 81.5
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 1.3e-54 217.6 170 67.1
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.5e-53 214.2 170 65.9
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 3.2e-48 196.4 227 51.1
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 8.7e-46 188.3 122 72.1
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-45 186.8 201 55.2
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 5.7e-45 185.7 157 62.4
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 9.7e-45 184.9 160 61.9
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-44 183.0 172 58.1
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 4.8e-44 182.6 160 62.5
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 5.3e-43 179.1 224 50.4
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 9.0e-43 178.3 210 52.4
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-41 173.7 175 55.4
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-40 170.2 228 47.8
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 4.2e-40 169.5 108 77.8
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 8.8e-38 161.8 104 74.0
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-37 161.4 146 60.3
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 1.5e-37 161.0 175 56.6
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 8.2e-36 155.2 105 71.4
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-35 154.8 206 49.5
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 7.7e-34 148.7 94 78.7
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-33 146.7 97 75.3
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-33 146.4 160 53.1
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-33 146.4 160 53.1
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 4.2e-32 142.9 88 72.7
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 1.2e-31 141.4 335 34.3
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 7.9e-31 138.7 172 51.2
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-30 138.3 121 61.2
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 2.2e-25 120.6 73 76.7
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-24 117.5 139 52.5
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 7.2e-24 115.5 112 57.1
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 5.7e-21 105.9 70 77.1
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 5.3e-19 99.4 159 40.9
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.9e-17 93.6 57 77.2
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 7.2e-16 89.0 105 47.6
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.0e-14 85.1 55 70.9
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-14 84.7 89 53.9
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 3.8e-09 66.6 139 33.8
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 5.0e-09 66.2 34 82.4
Duzib205G0541 Durio zibethinus HOM05D004703 ORTHO05D005801 4.7e-07 59.7 151 36.4
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 6.1e-07 59.3 111 35.1


User provided reference genes

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