Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p015965 Quercus lobata HOM05D002488 ORTHO05D002613 1.1e-37 159.5 78 100.0
QL05p034566 Quercus lobata HOM05D002488 ORTHO05D002613 7.5e-31 136.7 70 95.7
TPR.G38796 Trifolium pratense HOM05D002488 ORTHO05D002613 5.4e-13 77.4 59 61.0
MBI01_g17244_MAGBIO Magnolia biondii HOM05D002488 ORTHO05D002613 2.0e-12 75.5 61 62.3
Dinv24780 Davidia involucrata HOM05D002488 ORTHO05D002613 3.5e-12 74.7 59 62.7
Ciclev10031488m.g Citrus clementina HOM05D002488 ORTHO05D002613 5.9e-12 73.9 59 61.0
Medtr5g032910 Medicago truncatula HOM05D002488 ORTHO05D002613 1.0e-11 73.2 59 57.6
QL10p006915 Quercus lobata HOM05D002488 ORTHO05D002613 1.0e-11 73.2 43 83.7
SHI17281 Sapria himalayana HOM05D002488 ORTHO05D002613 1.0e-11 73.2 55 61.8
Dinv38530 Davidia involucrata HOM05D002488 ORTHO05D002613 1.7e-11 72.4 42 81.0
Psat2g083960 Pisum sativum HOM05D000018 ORTHO05D000453 1.7e-11 72.4 59 61.0
Sabra15G0107100 Salix brachista HOM05D002488 ORTHO05D002613 2.3e-11 72.0 44 77.3
Actinidia24595 Actinidia chinensis HOM05D002488 ORTHO05D002613 3.9e-11 71.2 43 74.4
CiPaw.11G020700 Carya illinoinensis HOM05D002488 ORTHO05D002613 3.9e-11 71.2 44 77.3
Haze_07582 Corylus avellana HOM05D002488 ORTHO05D002613 3.9e-11 71.2 45 75.6
GSVIVG01007654001 Vitis vinifera HOM05D002488 ORTHO05D002613 3.9e-11 71.2 42 78.6
Ca_04560_v3 Cicer arietinum L. HOM05D002488 ORTHO05D002613 5.0e-11 70.9 58 58.6
Cfa019211 Carpinus fangiana HOM05D002488 ORTHO05D002613 6.6e-11 70.5 45 71.1
vmacro16644 Vaccinium macrocarpon HOM05D002488 ORTHO05D002613 6.6e-11 70.5 42 76.2
CDE05G0902 Ceratophyllum demersum HOM05D000479 ORTHO05D002613 8.6e-11 70.1 43 76.7
Eucgr.B00224 Eucalyptus grandis HOM05D002488 ORTHO05D002613 8.6e-11 70.1 40 80.0
Lj5C129G10 Lonicera japonica HOM05D002488 ORTHO05D002613 8.6e-11 70.1 43 76.7
Ciclev10019747m.g Citrus clementina HOM05D002488 ORTHO05D002613 1.1e-10 69.7 43 74.4
Potri.012G085600 Populus trichocarpa HOM05D002488 ORTHO05D002613 1.1e-10 69.7 42 78.6
Rhsim12G0167800 Rhododendron simsii HOM05D002488 ORTHO05D002613 1.1e-10 69.7 44 72.7
Dinv20601 Davidia involucrata HOM05D002488 ORTHO05D002613 1.9e-10 68.9 43 76.7
Actinidia08959 Actinidia chinensis HOM05D002488 ORTHO05D002613 3.3e-10 68.2 42 71.4
CANSAT80G1691 Cannabis sativa HOM05D002488 ORTHO05D002613 4.3e-10 67.8 42 78.6
Cpa.g.sc159.28 Carica papaya HOM05D002488 ORTHO05D002613 4.3e-10 67.8 40 77.5
Duzib068G0576 Durio zibethinus HOM05D002488 ORTHO05D002613 4.3e-10 67.8 42 71.4
Lj9A442T65 Lonicera japonica HOM05D002488 ORTHO05D002613 4.3e-10 67.8 42 71.4
Sabra12G0061500 Salix brachista HOM05D002488 ORTHO05D002613 4.3e-10 67.8 42 76.2
Atru.chr9.2572 Acer truncatum HOM05D002488 ORTHO05D002613 5.6e-10 67.4 42 73.8
CSS0004341 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 5.6e-10 67.4 41 80.5
CDE02G2064 Ceratophyllum demersum HOM05D002488 ORTHO05D002613 5.6e-10 67.4 52 63.5
Manes.06G109900 Manihot esculenta HOM05D002488 ORTHO05D002613 5.6e-10 67.4 42 71.4
Aqoxy3G01216 Aquilegia oxysepala HOM05D002488 ORTHO05D002613 7.3e-10 67.0 42 73.8
MBI04_g31204_MAGBIO Magnolia biondii HOM05D002488 ORTHO05D002613 7.3e-10 67.0 45 68.9
ATR0824G118 Amborella trichopoda HOM05D002488 ORTHO05D002613 9.5e-10 66.6 41 73.2
Potri.015G083800 Populus trichocarpa HOM05D002488 ORTHO05D002613 9.5e-10 66.6 42 71.4
PSO017G5698 Papaver somniferum HOM05D002488 ORTHO05D002613 1.2e-09 66.2 40 75.0
PSO339G4325 Papaver somniferum HOM05D002488 ORTHO05D002613 1.2e-09 66.2 40 75.0
Thecc.03G025300 Theobroma cacao HOM05D002488 ORTHO05D002613 1.6e-09 65.9 42 69.0
Prupe.8G003900 Prunus persica HOM05D002488 ORTHO05D002613 2.1e-09 65.5 43 67.4
Manes.14G060900 Manihot esculenta HOM05D002488 ORTHO05D002613 2.8e-09 65.1 43 69.8
AUR62008148 Chenopodium quinoa HOM05D002488 ORTHO05D002613 3.6e-09 64.7 39 74.4
AUR62028730 Chenopodium quinoa HOM05D002488 ORTHO05D002613 3.6e-09 64.7 39 74.4
TAR622G0986 Trochodendron aralioides HOM05D002488 ORTHO05D002613 3.6e-09 64.7 41 73.2
Duzib205G2026 Durio zibethinus HOM05D002488 ORTHO05D002613 4.7e-09 64.3 42 69.0
SEGI_12322 Sequoiadendron giganteum HOM05D002488 ORTHO05D002613 4.7e-09 64.3 47 66.0
CiPaw.12G030700 Carya illinoinensis HOM05D002488 ORTHO05D002613 6.2e-09 63.9 43 72.1
MD10G1041600 Malus domestica HOM05D002488 ORTHO05D002613 6.2e-09 63.9 43 67.4
PGR083G2220 Punica granatum HOM05D002488 ORTHO05D002613 8.0e-09 63.5 39 76.9
Duzib251G0539 Durio zibethinus HOM05D002488 ORTHO05D002613 1.0e-08 63.2 48 54.2
Nn2g14939 Nelumbo nucifera HOM05D002488 ORTHO05D002613 1.0e-08 63.2 41 73.2
Hund02784 Selenicereus undatus HOM05D002488 ORTHO05D002613 1.0e-08 63.2 39 71.8
Sc04g0001530 Simmondsia chinensis HOM05D002488 ORTHO05D002613 1.0e-08 63.2 43 65.1
TWI23G0090 Tripterygium wilfordii HOM05D002488 ORTHO05D002613 1.0e-08 63.2 43 72.1
CSS0011614 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 1.4e-08 62.8 41 75.6
CSS0033940 Camellia sinensis var. sinensis HOM05D002488 ORTHO05D002613 1.4e-08 62.8 41 75.6
FAN20G0001 Fragaria x ananassa HOM05D002488 ORTHO05D002613 1.4e-08 62.8 43 65.1
Nn4g22610 Nelumbo nucifera HOM05D002488 ORTHO05D002613 1.4e-08 62.8 39 79.5
Prupe.1G244900 Prunus persica HOM05D002488 ORTHO05D002613 1.4e-08 62.8 42 64.3
Zm00001eb052280 Zea mays HOM05D002488 ORTHO05D002613 1.4e-08 62.8 65 52.3
Gohir.D12G202100 Gossypium hirsutum HOM05D002488 ORTHO05D002613 1.8e-08 62.4 41 68.3
Hma1.2p1_2227F.1_g317490 Hydrangea macrophylla HOM05D002488 ORTHO05D002613 1.8e-08 62.4 42 69.0
MD05G1037800 Malus domestica HOM05D002488 ORTHO05D002613 1.8e-08 62.4 42 66.7
EL10Ac5g10659 Beta vulgaris HOM05D002488 ORTHO05D002613 2.3e-08 62.0 42 61.9
FAN19G3027 Fragaria x ananassa HOM05D002488 ORTHO05D002613 3.1e-08 61.6 43 62.8
Gohir.A12G199300 Gossypium hirsutum HOM05D002488 ORTHO05D002613 3.1e-08 61.6 40 67.5
HanXRQChr10g0296151 Helianthus annuus HOM05D002488 ORTHO05D002613 3.1e-08 61.6 55 54.5
PSO478G1227 Papaver somniferum HOM05D002488 ORTHO05D002613 3.1e-08 61.6 39 71.8
FvH4_2g00400 Fragaria vesca HOM05D002488 ORTHO05D002613 5.2e-08 60.8 41 65.9
FAN24G3477 Fragaria x ananassa HOM05D002488 ORTHO05D002613 5.2e-08 60.8 41 65.9
FAN27G2309 Fragaria x ananassa HOM05D002488 ORTHO05D002613 5.2e-08 60.8 41 65.9
HanXRQChr02g0035791 Helianthus annuus HOM05D002488 ORTHO05D002613 5.2e-08 60.8 40 65.0
RcHm_v2.0_Chr6g0249641 Rosa chinensis HOM05D002488 ORTHO05D002613 5.2e-08 60.8 42 61.9
Oeu020887.1 Olea europaea HOM05D002488 ORTHO05D002613 6.8e-08 60.5 48 54.2
Gorai.008G217100 Gossypium raimondii HOM05D002488 ORTHO05D002613 8.9e-08 60.1 40 67.5
COL.COLO4_35718 Corchorus olitorius HOM05D002488 ORTHO05D002613 1.5e-07 59.3 40 62.5
Phvul.009G174300 Phaseolus vulgaris HOM05D002488 ORTHO05D002613 1.5e-07 59.3 43 62.8
TWI39G1221 Tripterygium wilfordii HOM05D002488 ORTHO05D002613 1.5e-07 59.3 44 63.6
VMungo1215G0429 Vigna mungo HOM05D002488 ORTHO05D002613 1.5e-07 59.3 42 61.9
Atru.chr11.2123 Acer truncatum HOM05D002488 ORTHO05D002613 2.0e-07 58.9 42 61.9
Atru.chr11.2138 Acer truncatum HOM05D002488 ORTHO05D002613 2.0e-07 58.9 42 61.9
QL03p058006 Quercus lobata HOM05D002488 ORTHO05D002613 2.0e-07 58.9 41 58.5
MSTRG.11493 Avicennia marina HOM05D002488 ORTHO05D002613 2.6e-07 58.5 42 66.7
ECA246G1629 Erigeron canadensis HOM05D002176 ORTHO05D002598 3.4e-07 58.2 42 61.9
Glyma.04G188000 Glycine max HOM05D002488 ORTHO05D002613 3.4e-07 58.2 42 64.3
Lsat_1_v5_gn_1_27821 Lactuca sativa HOM05D002488 ORTHO05D002613 3.4e-07 58.2 40 67.5
RcHm_v2.0_Chr7g0236341 Rosa chinensis HOM05D002488 ORTHO05D002613 3.4e-07 58.2 42 59.5
Cpa.g.sc33.24 Carica papaya HOM05D002488 ORTHO05D002613 4.4e-07 57.8 42 59.5
Haze_12251 Corylus avellana HOM05D002488 ORTHO05D002613 4.4e-07 57.8 41 61.0
arahy.Tifrunner.gnm1.ann1.ZI7BUH Arachis hypogaea HOM05D002488 ORTHO05D002613 5.8e-07 57.4 42 59.5
COL.COLO4_24273 Corchorus olitorius HOM05D002488 ORTHO05D002613 5.8e-07 57.4 42 54.8
Lalb_Chr08g0236741 Lupinus albus HOM05D002488 ORTHO05D002613 5.8e-07 57.4 43 62.8
Lalb_Chr13g0297591 Lupinus albus HOM05D002488 ORTHO05D002613 5.8e-07 57.4 42 61.9
Thecc.02G260400 Theobroma cacao HOM05D002488 ORTHO05D002613 5.8e-07 57.4 38 60.5
Lsat_1_v5_gn_5_14360 Lactuca sativa HOM05D002488 ORTHO05D002613 7.5e-07 57.0 42 54.8
Sed0021301 Sechium edule HOM05D002488 ORTHO05D002613 7.5e-07 57.0 42 64.3
TWI36G0291 Tripterygium wilfordii HOM05D002488 ORTHO05D002613 7.5e-07 57.0 42 57.1
Phvul.002G149700 Phaseolus vulgaris HOM05D002488 ORTHO05D002613 9.8e-07 56.6 42 54.8
SGA_v2.0_scaffold90G27842 Striga asiatica HOM05D002488 ORTHO05D002613 9.8e-07 56.6 45 55.6
VMungo1309G0915 Vigna mungo HOM05D002488 ORTHO05D002613 9.8e-07 56.6 42 59.5
SGA_v2.0_scaffold25G10801 Striga asiatica HOM05D002488 ORTHO05D002613 1.3e-06 56.2 45 57.8
ECA232G3078 Erigeron canadensis HOM05D000048 ORTHO05D002613 1.7e-06 55.8 49 51.0
Migut.K00602 Erythranthe guttata HOM05D002488 ORTHO05D002613 1.7e-06 55.8 43 60.5
FvH4_5g35210 Fragaria vesca HOM05D002488 ORTHO05D002613 1.7e-06 55.8 42 59.5
Glyma.01G025600 Glycine max HOM05D002488 ORTHO05D002613 1.7e-06 55.8 42 54.8
Os04g0476700 Oryza sativa ssp. japonica HOM05D002488 ORTHO05D002613 2.2e-06 55.5 39 61.5
SalBow5G3101 Salvia bowleyana HOM05D002488 ORTHO05D002613 2.2e-06 55.5 47 53.2
SalBow5G4499 Salvia bowleyana HOM05D002488 ORTHO05D002613 2.2e-06 55.5 47 53.2
ClCG06G017390 Citrullus lanatus HOM05D002488 ORTHO05D002613 2.9e-06 55.1 43 55.8
CsaV3_1G001020 Cucumis sativus L. HOM05D002488 ORTHO05D002613 2.9e-06 55.1 43 53.5
Migut.O00154 Erythranthe guttata HOM05D002488 ORTHO05D002613 2.9e-06 55.1 44 56.8
Sopen03g031370 Solanum pennellii HOM05D002488 ORTHO05D002613 2.9e-06 55.1 42 69.0
PGSC0003DMG400018117 Solanum tuberosum HOM05D002488 ORTHO05D002613 2.9e-06 55.1 42 69.0
Sp6g37050 Schrenkiella parvula HOM05D002488 ORTHO05D002613 3.7e-06 54.7 42 54.8
TPR.G13210 Trifolium pratense HOM05D002488 ORTHO05D002613 3.7e-06 54.7 84 36.9
Ca_16132_v3 Cicer arietinum L. HOM05D002488 ORTHO05D002613 4.9e-06 54.3 39 59.0
Sed0014577 Sechium edule HOM05D002488 ORTHO05D002613 4.9e-06 54.3 40 60.0
Hund09463 Selenicereus undatus HOM05D002488 ORTHO05D002613 4.9e-06 54.3 38 52.6
Gohir.D02G158600 Gossypium hirsutum HOM05D002488 ORTHO05D002613 6.4e-06 53.9 42 47.6
Gorai.005G178200 Gossypium raimondii HOM05D002488 ORTHO05D002613 6.4e-06 53.9 42 47.6
Lj4g0015296 Lotus japonicus HOM05D002488 ORTHO05D002613 6.4e-06 53.9 41 58.5
Sc10g0010200 Simmondsia chinensis HOM05D002488 ORTHO05D002613 6.4e-06 53.9 41 58.5
Solyc03g112270.3 Solanum lycopersicum HOM05D002488 ORTHO05D002613 6.4e-06 53.9 42 66.7
HPP92_021378 Vanilla planifolia HOM05D002488 ORTHO05D002613 6.4e-06 53.9 39 53.8
Zm00001eb424850 Zea mays HOM05D002488 ORTHO05D002613 6.4e-06 53.9 38 57.9
Ah.11g051140 Amaranthus hybridus HOM05D002488 ORTHO05D002613 8.3e-06 53.5 38 65.8
BcaNung06796 Brassica carinata HOM05D002488 ORTHO05D002613 8.3e-06 53.5 42 52.4
A10p30520 Brassica napus HOM05D002488 ORTHO05D002613 8.3e-06 53.5 42 52.4
C09p70980 Brassica napus HOM05D002488 ORTHO05D002613 8.3e-06 53.5 42 52.4
BolC9t59862H Brassica oleracea HOM05D002488 ORTHO05D002613 8.3e-06 53.5 42 52.4
BraA10t45093Z Brassica rapa HOM05D002488 ORTHO05D002613 8.3e-06 53.5 42 52.4
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 8.3e-06 53.5 41 63.4
Thhalv10013295m.g Eutrema salsugineum HOM05D002488 ORTHO05D002613 8.3e-06 53.5 42 52.4


User provided reference genes

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