Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p015822 Quercus lobata HOM05D001082 ORTHO05D001538 4.2e-60 234.6 125 100.0
CiPaw.11G145000 Carya illinoinensis HOM05D001082 ORTHO05D001538 4.4e-17 91.7 55 83.6
QL10p015527 Quercus lobata HOM05D000183 ORTHO05D000100 9.8e-17 90.5 54 90.7
Cfa012044 Carpinus fangiana HOM05D001082 ORTHO05D001538 8.3e-16 87.4 56 78.6
Cpa.g.sc29.58 Carica papaya HOM05D001082 ORTHO05D001538 3.5e-14 82.0 63 69.8
PGR031G0371 Punica granatum HOM05D001082 ORTHO05D001538 4.6e-14 81.6 59 67.8
MD00G1071900 Malus domestica HOM05D001082 ORTHO05D001538 1.0e-13 80.5 59 71.2
Eucgr.D01963 Eucalyptus grandis HOM05D001082 ORTHO05D001538 6.6e-13 77.8 59 67.8
Prupe.5G083300 Prunus persica HOM05D001082 ORTHO05D001538 6.6e-13 77.8 59 69.5
MD04G1076400 Malus domestica HOM05D001082 ORTHO05D001538 1.5e-12 76.6 58 69.0
Cc08_g13520 Coffea canephora HOM05D001082 ORTHO05D001538 2.5e-12 75.9 77 59.7
FvH4_5g00960 Fragaria vesca HOM05D001082 ORTHO05D001538 4.3e-12 75.1 59 66.1
FAN08G0554 Fragaria x ananassa HOM05D001082 ORTHO05D001538 4.3e-12 75.1 59 66.1
FAN13G2863 Fragaria x ananassa HOM05D001082 ORTHO05D001538 4.3e-12 75.1 59 66.1
FAN18G1288 Fragaria x ananassa HOM05D001082 ORTHO05D001538 4.3e-12 75.1 59 66.1
GSVIVG01019921001 Vitis vinifera HOM05D001082 ORTHO05D001538 4.3e-12 75.1 59 64.4
Actinidia27426 Actinidia chinensis HOM05D001082 ORTHO05D001538 5.6e-12 74.7 59 64.4
CiPaw.11G037900 Carya illinoinensis HOM05D000183 ORTHO05D000100 5.6e-12 74.7 54 74.1
RcHm_v2.0_Chr7g0200421 Rosa chinensis HOM05D001082 ORTHO05D001538 5.6e-12 74.7 59 66.1
Dinv37738 Davidia involucrata HOM05D001082 ORTHO05D001538 7.3e-12 74.3 58 63.8
Oeu040240.1 Olea europaea HOM05D001082 ORTHO05D001538 7.3e-12 74.3 66 57.6
CSS0000630 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D001538 9.5e-12 73.9 59 64.4
CSS0010369 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D001538 9.5e-12 73.9 59 64.4
Ciclev10021441m.g Citrus clementina HOM05D001082 ORTHO05D001538 9.5e-12 73.9 59 64.4
Duzib084G0562 Durio zibethinus HOM05D001082 ORTHO05D001538 9.5e-12 73.9 59 66.1
Thecc.03G264700 Theobroma cacao HOM05D001082 ORTHO05D001538 9.5e-12 73.9 59 64.4
FAN04G1514 Fragaria x ananassa HOM05D001082 ORTHO05D001538 1.6e-11 73.2 59 64.4
Lalb_Chr05g0225261 Lupinus albus HOM05D001082 ORTHO05D001538 1.6e-11 73.2 74 55.4
Ca_12289_v3 Cicer arietinum L. HOM05D001082 ORTHO05D001538 2.1e-11 72.8 59 64.4
Dinv39054 Davidia involucrata HOM05D001082 ORTHO05D001538 2.1e-11 72.8 58 63.8
Actinidia05243 Actinidia chinensis HOM05D001082 ORTHO05D001538 2.8e-11 72.4 59 62.7
Atru.chr9.1475 Acer truncatum HOM05D001082 ORTHO05D001538 3.6e-11 72.0 77 59.7
Duzib068G0500 Durio zibethinus HOM05D001082 ORTHO05D001538 3.6e-11 72.0 59 61.0
Lj8A253T49 Lonicera japonica HOM05D001082 ORTHO05D001538 4.7e-11 71.6 59 64.4
Manes.02G031700 Manihot esculenta HOM05D001082 ORTHO05D001538 4.7e-11 71.6 68 57.4
MSTRG.17723 Avicennia marina HOM05D001082 ORTHO05D001538 6.2e-11 71.2 77 54.5
Duzib205G0198 Durio zibethinus HOM05D001082 ORTHO05D001538 6.2e-11 71.2 59 62.7
arahy.Tifrunner.gnm1.ann1.PT5JT8 Arachis hypogaea HOM05D001082 ORTHO05D001538 1.1e-10 70.5 59 64.4
arahy.Tifrunner.gnm1.ann1.UBW3XN Arachis hypogaea HOM05D001082 ORTHO05D001538 1.1e-10 70.5 59 64.4
Glyma.05G054500 Glycine max HOM05D001082 ORTHO05D001538 1.1e-10 70.5 59 62.7
Gohir.A08G175100 Gossypium hirsutum HOM05D001082 ORTHO05D001538 1.1e-10 70.5 59 67.8
Gohir.D08G193700 Gossypium hirsutum HOM05D001082 ORTHO05D001538 1.1e-10 70.5 59 67.8
TWI81G0728 Tripterygium wilfordii HOM05D001082 ORTHO05D001538 1.1e-10 70.5 75 57.3
Gorai.004G204000 Gossypium raimondii HOM05D001082 ORTHO05D001538 1.8e-10 69.7 59 66.1
Peaxi162Scf00271g00048 Petunia axillaris HOM05D001082 ORTHO05D001538 1.8e-10 69.7 77 55.8
SGA_v2.0_scaffold70G23579 Striga asiatica HOM05D001082 ORTHO05D001538 1.8e-10 69.7 74 54.1
EL10Ac5g12656 Beta vulgaris HOM05D001082 ORTHO05D001538 2.3e-10 69.3 59 61.0
Glyma.17G136900 Glycine max HOM05D001082 ORTHO05D001538 2.3e-10 69.3 59 61.0
Ah.12g058010 Amaranthus hybridus HOM05D001082 ORTHO05D001538 3.1e-10 68.9 59 64.4
Sc01g0009060 Simmondsia chinensis HOM05D001082 ORTHO05D001538 3.1e-10 68.9 55 63.6
Lj4g0011342 Lotus japonicus HOM05D001082 ORTHO05D001538 4.0e-10 68.6 55 61.8
Nitab4.5_0006122g0010 Nicotiana tabacum HOM05D001082 ORTHO05D001538 5.2e-10 68.2 77 54.5
Ah.02g116290 Amaranthus hybridus HOM05D001082 ORTHO05D001538 6.8e-10 67.8 59 62.7
Haze_07381 Corylus avellana HOM05D000183 ORTHO05D000100 6.8e-10 67.8 54 72.2
Hund14681 Selenicereus undatus HOM05D001082 ORTHO05D001538 6.8e-10 67.8 59 61.0
Hund30865 Selenicereus undatus HOM05D001082 ORTHO05D001538 6.8e-10 67.8 59 61.0
Hund30867 Selenicereus undatus HOM05D001082 ORTHO05D001538 6.8e-10 67.8 59 61.0
Hund30875 Selenicereus undatus HOM05D001082 ORTHO05D001538 6.8e-10 67.8 59 61.0
Sed0013446 Sechium edule HOM05D001082 ORTHO05D001538 8.9e-10 67.4 59 64.4
TPR.G37694 Trifolium pratense HOM05D001082 ORTHO05D001538 8.9e-10 67.4 59 59.3
TAR374G1317 Trochodendron aralioides HOM05D001082 ORTHO05D001538 8.9e-10 67.4 59 57.6
VMungo0251G2424 Vigna mungo HOM05D001082 ORTHO05D001538 8.9e-10 67.4 59 59.3
VMungo1215G0228 Vigna mungo HOM05D001082 ORTHO05D001538 8.9e-10 67.4 73 52.1
CAN.G630.50 Capsicum annuum HOM05D001082 ORTHO05D001538 1.2e-09 67.0 77 54.5
Migut.A00875 Erythranthe guttata HOM05D001082 ORTHO05D001538 1.2e-09 67.0 78 56.4
CANSAT35G0068 Cannabis sativa HOM05D001082 ORTHO05D001538 1.5e-09 66.6 59 57.6
DCAR_006792 Daucus carota HOM05D001082 ORTHO05D001538 1.5e-09 66.6 76 50.0
Medtr4g101920 Medicago truncatula HOM05D001082 ORTHO05D001538 1.5e-09 66.6 58 60.3
Psat4g069760 Pisum sativum HOM05D001082 ORTHO05D001538 1.5e-09 66.6 58 60.3
AUR62010538 Chenopodium quinoa HOM05D001082 ORTHO05D001538 2.0e-09 66.2 59 61.0
Manes.01G071100 Manihot esculenta HOM05D001082 ORTHO05D001538 2.0e-09 66.2 53 64.2
Rhsim07G0098200 Rhododendron simsii HOM05D001082 ORTHO05D001538 2.0e-09 66.2 59 61.0
PGSC0003DMG401003922 Solanum tuberosum HOM05D001082 ORTHO05D001538 2.0e-09 66.2 77 54.5
Cfa018992 Carpinus fangiana HOM05D000183 ORTHO05D000100 2.6e-09 65.9 54 70.4
Lj2P204T43 Lonicera japonica HOM05D001082 ORTHO05D001538 2.6e-09 65.9 51 64.7
Oeu022404.1 Olea europaea HOM05D001082 ORTHO05D001538 2.6e-09 65.9 57 54.4
Solyc08g079670.3 Solanum lycopersicum HOM05D001082 ORTHO05D001538 2.6e-09 65.9 77 54.5
Sopen08g028030 Solanum pennellii HOM05D001082 ORTHO05D001538 2.6e-09 65.9 77 54.5
CsaV3_3G003350 Cucumis sativus L. HOM05D001082 ORTHO05D001538 3.4e-09 65.5 59 57.6
Potri.003G117400 Populus trichocarpa HOM05D001082 ORTHO05D001538 3.4e-09 65.5 53 62.3
Rhsim07G0099300 Rhododendron simsii HOM05D001082 ORTHO05D001538 3.4e-09 65.5 59 61.0
AUR62017357 Chenopodium quinoa HOM05D001082 ORTHO05D001538 4.4e-09 65.1 59 59.3
ClCG10G003320 Citrullus lanatus HOM05D001082 ORTHO05D001538 4.4e-09 65.1 59 59.3
Potri.001G114600 Populus trichocarpa HOM05D001082 ORTHO05D001538 4.4e-09 65.1 53 62.3
TPR.G19585 Trifolium pratense HOM05D001082 ORTHO05D001538 4.4e-09 65.1 59 57.6
COL.COLO4_23833 Corchorus olitorius HOM05D001082 ORTHO05D001538 7.5e-09 64.3 59 59.3
Phvul.003G216500 Phaseolus vulgaris HOM05D001082 ORTHO05D001538 7.5e-09 64.3 57 57.9
Lalb_Chr16g0379881 Lupinus albus HOM05D001082 ORTHO05D001538 9.9e-09 63.9 59 54.2
Sabra01G0087700 Salix brachista HOM05D001082 ORTHO05D001538 9.9e-09 63.9 53 62.3
Psat2g180560 Pisum sativum HOM05D001082 ORTHO05D001538 1.3e-08 63.5 59 54.2
TWI60G1597 Tripterygium wilfordii HOM05D001082 ORTHO05D001538 1.3e-08 63.5 75 54.7
SalBow1G8073 Salvia bowleyana HOM05D001082 ORTHO05D001538 1.7e-08 63.2 77 51.9
AL7G30660 Arabidopsis lyrata HOM05D001082 ORTHO05D001538 2.2e-08 62.8 75 46.7
AT4G22850 Arabidopsis thaliana HOM05D001082 ORTHO05D001538 2.2e-08 62.8 75 48.0
Carub.0007s1842 Capsella rubella HOM05D001082 ORTHO05D001538 2.2e-08 62.8 60 53.3
Thhalv10025848m.g Eutrema salsugineum HOM05D001082 ORTHO05D001538 2.2e-08 62.8 75 48.0
Medtr5g011420 Medicago truncatula HOM05D001082 ORTHO05D001538 2.2e-08 62.8 56 57.1
Sabra03G0081800 Salix brachista HOM05D001082 ORTHO05D001538 2.2e-08 62.8 53 58.5
SGA_v2.0_scaffold37G14859 Striga asiatica HOM05D001082 ORTHO05D001538 2.2e-08 62.8 77 49.4
Aa31LG6G4920 Aethionema arabicum HOM05D001082 ORTHO05D001538 2.9e-08 62.4 75 49.3
MSTRG.12039 Avicennia marina HOM05D001082 ORTHO05D001538 2.9e-08 62.4 77 51.9
BcaC09g51069 Brassica carinata HOM05D001082 ORTHO05D001538 6.4e-08 61.2 75 45.3
BolC1t01670H Brassica oleracea HOM05D001082 ORTHO05D001538 6.4e-08 61.2 60 51.7
Sp7g20930 Schrenkiella parvula HOM05D001082 ORTHO05D001538 6.4e-08 61.2 76 47.4
BcaNung01021 Brassica carinata HOM05D001082 ORTHO05D001538 8.3e-08 60.8 75 45.3
Hund11554 Selenicereus undatus HOM05D001082 ORTHO05D001538 8.3e-08 60.8 59 55.9
CARHR229880 Cardamine hirsuta HOM05D001082 ORTHO05D001538 1.1e-07 60.5 60 53.3
Phvul.002G152000 Phaseolus vulgaris HOM05D001082 ORTHO05D001538 1.1e-07 60.5 59 50.8
Sed0022499 Sechium edule HOM05D001082 ORTHO05D001538 1.1e-07 60.5 59 57.6
AT4G12000 Arabidopsis thaliana HOM05D001082 ORTHO05D001538 1.9e-07 59.7 59 57.6
Gohir.A03G012600 Gossypium hirsutum HOM05D001082 ORTHO05D001538 1.9e-07 59.7 57 56.1
Lalb_Chr09g0324601 Lupinus albus HOM05D001082 ORTHO05D001538 1.9e-07 59.7 59 55.9
Prupe.5G185900 Prunus persica HOM05D000183 ORTHO05D000100 1.9e-07 59.7 46 76.1
Glyma.01G213500 Glycine max HOM05D001082 ORTHO05D001538 2.4e-07 59.3 60 55.0
Glyma.11G028400 Glycine max HOM05D001082 ORTHO05D001538 2.4e-07 59.3 60 58.3
Gohir.D03G156900 Gossypium hirsutum HOM05D001082 ORTHO05D001538 2.4e-07 59.3 57 56.1
Gorai.003G164800 Gossypium raimondii HOM05D001082 ORTHO05D001538 2.4e-07 59.3 57 56.1
CANSAT80G1329 Cannabis sativa HOM05D000183 ORTHO05D000100 4.1e-07 58.5 59 62.7
Carub.0006s3110 Capsella rubella HOM05D001082 ORTHO05D001538 4.1e-07 58.5 59 57.6
SalBow6G6327 Salvia bowleyana HOM05D001082 ORTHO05D001538 4.1e-07 58.5 58 56.9
Aqoxy7G00581 Aquilegia oxysepala HOM05D001082 ORTHO05D001538 7.1e-07 57.8 57 49.1
AL6G46790 Arabidopsis lyrata HOM05D001082 ORTHO05D001538 9.2e-07 57.4 59 54.2
HanXRQChr09g0246741 Helianthus annuus HOM05D001082 ORTHO05D001538 9.2e-07 57.4 73 45.2
Duzib068G0161 Durio zibethinus HOM05D000183 ORTHO05D000100 1.2e-06 57.0 50 66.0
ECA233G5469 Erigeron canadensis HOM05D001082 ORTHO05D001538 1.2e-06 57.0 76 47.4
Nn1g01185 Nelumbo nucifera HOM05D001082 ORTHO05D001538 1.2e-06 57.0 59 50.8
Aa31LG9G10470 Aethionema arabicum HOM05D000005 ORTHO05D000012 1.6e-06 56.6 75 45.3
Hma1.2p1_0367F.1_g137210 Hydrangea macrophylla HOM05D001082 ORTHO05D001538 2.1e-06 56.2 71 42.3
Migut.E01011 Erythranthe guttata HOM05D001082 ORTHO05D001538 2.7e-06 55.8 77 45.5
Lsat_1_v5_gn_6_8521 Lactuca sativa HOM05D001082 ORTHO05D001538 2.7e-06 55.8 58 51.7
Lj2g0025407 Lotus japonicus HOM05D001082 ORTHO05D001538 2.7e-06 55.8 59 52.5
Oeu059475.1 Olea europaea HOM05D001082 ORTHO05D001538 2.7e-06 55.8 77 46.8
BraA09t38284Z Brassica rapa HOM05D001082 ORTHO05D001538 3.5e-06 55.5 59 52.5
CARHR012740 Cardamine hirsuta HOM05D001082 ORTHO05D001538 3.5e-06 55.5 54 48.1
CARHR254280 Cardamine hirsuta HOM05D001082 ORTHO05D001538 3.5e-06 55.5 74 44.6
Sp1g11050 Schrenkiella parvula HOM05D001082 ORTHO05D001538 3.5e-06 55.5 54 48.1
BcaC05g25189 Brassica carinata HOM05D001082 ORTHO05D001538 7.8e-06 54.3 54 48.1
A06p09180 Brassica napus HOM05D001082 ORTHO05D001538 7.8e-06 54.3 54 48.1
C05p10760 Brassica napus HOM05D001082 ORTHO05D001538 7.8e-06 54.3 54 48.1
BolC5t29817H Brassica oleracea HOM05D001082 ORTHO05D001538 7.8e-06 54.3 54 48.1
BraA06t24104Z Brassica rapa HOM05D001082 ORTHO05D001538 7.8e-06 54.3 54 48.1
THA.LOC104809436 Tarenaya hassleriana HOM05D001082 ORTHO05D001538 7.8e-06 54.3 59 47.5


User provided reference genes

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