Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 9.7e-104 380.2 196 100.0
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 5.8e-64 248.1 200 68.5
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 3.0e-60 235.7 198 68.7
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 5.1e-60 235.0 198 68.7
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 5.1e-60 235.0 198 68.7
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 3.3e-59 232.3 183 72.7
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 3.3e-59 232.3 205 65.9
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 9.5e-59 230.7 196 67.9
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 1.4e-57 226.9 140 82.1
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 2.4e-57 226.1 149 80.5
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 2.4e-57 226.1 203 65.5
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 4.0e-57 225.3 162 76.5
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 8.9e-57 224.2 138 83.3
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 3.4e-56 222.2 196 64.8
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 5.8e-56 221.5 196 64.8
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 1.3e-55 220.3 203 65.5
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 2.9e-55 219.2 183 69.9
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 3.8e-55 218.8 196 65.3
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 4.9e-55 218.4 198 64.6
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 4.9e-55 218.4 147 78.2
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 6.4e-55 218.0 199 63.8
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 8.4e-55 217.6 185 67.0
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 1.4e-54 216.9 147 77.6
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 2.4e-54 216.1 147 77.6
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.2e-54 215.7 201 61.2
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 5.4e-54 214.9 146 76.7
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 5.4e-54 214.9 142 78.9
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 9.2e-54 214.2 191 64.9
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 1.2e-53 213.8 168 70.8
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 7.8e-53 211.1 197 62.4
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 7.8e-53 211.1 185 63.2
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.0e-52 209.1 198 60.6
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 4.3e-51 205.3 146 74.0
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 5.6e-51 204.9 205 58.5
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 1.2e-50 203.8 203 60.1
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.6e-50 203.4 200 62.0
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 1.6e-50 203.4 189 62.4
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 2.8e-50 202.6 109 88.1
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 4.7e-50 201.8 180 62.8
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 4.7e-50 201.8 191 60.7
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 8.1e-50 201.1 129 76.0
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 8.1e-50 201.1 191 59.2
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 8.1e-50 201.1 199 59.8
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.1e-49 200.7 150 72.0
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 1.4e-49 200.3 190 60.0
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 1.4e-49 200.3 143 71.3
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.4e-49 200.3 201 60.7
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.8e-49 199.9 134 75.4
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 1.8e-49 199.9 191 58.6
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 3.1e-49 199.1 156 67.9
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 3.1e-49 199.1 161 67.7
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 5.3e-49 198.4 142 73.2
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 9.0e-49 197.6 143 73.4
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 1.2e-48 197.2 120 81.7
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.2e-48 197.2 192 58.3
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 1.5e-48 196.8 149 70.5
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 2.0e-48 196.4 146 69.2
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 2.6e-48 196.1 111 84.7
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 2.6e-48 196.1 111 84.7
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 5.8e-48 194.9 176 62.5
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 7.6e-48 194.5 191 59.7
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 7.6e-48 194.5 142 71.1
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 1.3e-47 193.7 191 59.2
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 1.7e-47 193.4 191 58.6
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 2.2e-47 193.0 142 70.4
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 2.2e-47 193.0 142 70.4
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 2.2e-47 193.0 142 70.4
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 6.4e-47 191.4 175 61.1
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 6.4e-47 191.4 175 61.1
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 6.4e-47 191.4 191 58.1
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 6.4e-47 191.4 199 58.8
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 8.4e-47 191.0 142 69.7
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 1.1e-46 190.7 194 58.8
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 1.4e-46 190.3 140 67.9
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 2.1e-45 186.4 96 90.6
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 2.7e-45 186.0 193 57.5
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 4.6e-45 185.3 182 58.8
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 4.6e-45 185.3 106 80.2
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 6.0e-45 184.9 142 66.9
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 6.0e-45 184.9 196 57.7
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 1.3e-44 183.7 182 59.3
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 1.1e-43 180.6 138 68.1
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 1.1e-41 174.1 185 55.7
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 1.8e-41 173.3 110 74.5
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 7.6e-40 167.9 108 75.0
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 1.3e-39 167.2 126 67.5
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 2.9e-39 166.0 153 64.1
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 8.4e-39 164.5 170 56.5
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 1.1e-38 164.1 164 57.9
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 1.1e-38 164.1 101 73.3
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.1e-38 164.1 198 53.0
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.9e-38 163.3 196 55.6
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 1.9e-38 163.3 119 70.6
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 2.7e-37 159.5 171 56.1
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 2.5e-35 152.9 81 87.7
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 4.0e-33 145.6 77 83.1
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 6.9e-33 144.8 133 57.9
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 2.6e-32 142.9 115 64.3
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 1.9e-27 126.7 95 58.9
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 3.3e-27 125.9 150 54.0
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 7.4e-27 124.8 132 48.5
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 4.0e-25 119.0 151 45.0
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 5.8e-24 115.2 136 55.1
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 1.3e-23 114.0 95 53.7
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 2.9e-23 112.8 86 74.4
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 6.5e-23 111.7 127 45.7
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.4e-23 111.3 80 72.5
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.4e-23 111.3 80 72.5
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.4e-23 111.3 80 72.5
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.4e-23 111.3 80 72.5
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 1.1e-22 110.9 56 94.6
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 2.5e-22 109.8 74 75.7
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 1.6e-21 107.1 110 58.2
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 1.0e-20 104.4 49 89.8
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 3.9e-20 102.4 51 94.1
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 6.7e-20 101.7 91 54.9
Cfa020517 Carpinus fangiana HOM05D005851 ORTHO05D007137 1.5e-19 100.5 118 55.1
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 1.5e-19 100.5 84 61.9
Haze_09033 Corylus avellana HOM05D000491 ORTHO05D000359 1.6e-18 97.1 105 58.1
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.4e-17 94.0 52 82.7
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-13 80.1 80 53.8
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 4.6e-13 79.0 141 36.9
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 1.1e-11 74.3 49 77.6
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 1.7e-10 70.5 111 51.4
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 2.8e-10 69.7 116 48.3
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.1e-09 67.8 86 52.3
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 3.1e-09 66.2 66 63.6
Prupe.5G082400 Prunus persica HOM05D005851 ORTHO05D007137 2.6e-08 63.2 120 45.0
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 1.7e-07 60.5 74 52.7
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 1.7e-07 60.5 74 52.7
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 8.5e-07 58.2 40 72.5
arahy.Tifrunner.gnm1.ann1.54ECHP Arachis hypogaea HOM05D005851 ORTHO05D007137 1.1e-06 57.8 39 79.5
arahy.Tifrunner.gnm1.ann1.CS7A8V Arachis hypogaea HOM05D005851 ORTHO05D007137 1.1e-06 57.8 39 79.5
arahy.Tifrunner.gnm1.ann1.IPBJ4Y Arachis hypogaea HOM05D005851 ORTHO05D007137 1.1e-06 57.8 39 79.5
arahy.Tifrunner.gnm1.ann1.Q2BFW3 Arachis hypogaea HOM05D005851 ORTHO05D007137 1.1e-06 57.8 39 79.5
arahy.Tifrunner.gnm1.ann1.6D2PAS Arachis hypogaea HOM05D005851 ORTHO05D007137 1.4e-06 57.4 38 81.6
Medtr5g011478 Medicago truncatula HOM05D005851 ORTHO05D007137 3.2e-06 56.2 40 72.5
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 5.5e-06 55.5 43 67.4


User provided reference genes

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