Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 8.2e-55 216.9 112 100.0
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 8.2e-31 137.1 102 75.5
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.8e-30 136.0 101 75.2
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 5.0e-28 127.9 100 75.0
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 8.5e-28 127.1 91 75.8
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 6.3e-23 110.9 114 57.0
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 4.1e-22 108.2 105 61.0
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 7.0e-22 107.5 107 59.8
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 9.1e-22 107.1 100 63.0
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.6e-21 106.3 81 71.6
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 3.5e-21 105.1 85 68.2
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 5.9e-21 104.4 85 68.2
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.2e-20 102.4 109 56.0
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.9e-20 102.1 103 62.1
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 3.8e-20 101.7 103 58.3
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 5.0e-20 101.3 96 59.4
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.0e-20 101.3 86 66.3
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.5e-20 100.9 102 60.8
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.5e-20 100.5 102 58.8
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 8.5e-20 100.5 99 62.6
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 2.5e-19 99.0 103 60.2
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.2e-19 98.6 102 57.8
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.2e-19 98.2 102 59.8
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 4.2e-19 98.2 94 62.8
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 7.2e-19 97.4 106 55.7
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.6e-18 96.3 96 58.3
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.1e-18 95.9 102 55.9
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.7e-18 95.5 95 58.9
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 2.7e-18 95.5 101 58.4
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 4.7e-18 94.7 101 56.4
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 6.1e-18 94.4 103 60.2
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 1.0e-17 93.6 96 57.3
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.4e-17 93.2 103 59.2
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 4.0e-17 91.7 95 56.8
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 1.2e-16 90.1 92 60.9
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 4.4e-16 88.2 103 54.4
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 5.7e-16 87.8 102 52.0
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 9.7e-16 87.0 98 58.2
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.3e-15 86.7 104 52.9
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.3e-15 86.7 112 54.5
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 2.2e-15 85.9 93 54.8
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 2.2e-15 85.9 102 54.9
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 2.2e-15 85.9 102 53.9
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 6.3e-15 84.3 91 58.2
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 6.3e-15 84.3 93 60.2
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 8.2e-15 84.0 100 51.0
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 1.1e-14 83.6 104 51.9
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.8e-14 82.8 99 49.5
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.4e-14 82.4 119 49.6
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.2e-13 80.1 94 51.1
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.2e-13 80.1 76 60.5
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 1.2e-13 80.1 80 56.2
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.6e-13 79.7 94 51.1
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.6e-13 79.7 94 51.1
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.6e-13 79.7 94 51.1
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 3.5e-13 78.6 102 49.0
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 1.0e-12 77.0 95 50.5
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.7e-12 76.3 90 47.8
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.2e-12 75.9 94 50.0
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 2.2e-12 75.9 111 46.8
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.8e-12 75.1 94 47.9
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 5.0e-12 74.7 98 50.0
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 5.0e-12 74.7 94 56.4
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 6.5e-12 74.3 92 51.1
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 1.1e-11 73.6 66 59.1
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 2.5e-11 72.4 103 47.6
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 4.2e-11 71.6 85 55.3
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 5.5e-11 71.2 71 60.6
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 7.2e-11 70.9 95 53.7
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 9.4e-11 70.5 68 60.3
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.6e-10 69.7 84 56.0
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.6e-10 69.7 68 58.8
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 2.1e-10 69.3 111 45.9
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 2.7e-10 68.9 99 49.5
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 2.7e-10 68.9 107 43.9
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 3.6e-10 68.6 97 45.4
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.7e-10 68.2 101 47.5
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 4.7e-10 68.2 82 50.0
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 4.7e-10 68.2 93 49.5
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 1.8e-09 66.2 41 80.5
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.8e-09 66.2 96 46.9
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.8e-09 66.2 124 38.7
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 2.3e-09 65.9 104 45.2
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 3.0e-09 65.5 86 51.2
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.0e-09 65.5 99 48.5
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 5.2e-09 64.7 112 44.6
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.2e-08 63.5 97 42.3
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 1.5e-08 63.2 95 45.3
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.5e-08 63.2 104 42.3
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 2.0e-08 62.8 71 53.5
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 3.4e-08 62.0 64 54.7
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 5.7e-08 61.2 90 45.6
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 5.7e-08 61.2 111 41.4
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 5.7e-08 61.2 52 57.7
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 5.7e-08 61.2 64 51.6
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 7.5e-08 60.8 47 66.0
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 9.8e-08 60.5 99 42.4
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.3e-07 60.1 59 49.2
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-07 59.7 49 59.2
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.7e-07 59.7 49 59.2
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 2.2e-07 59.3 53 56.6
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 2.2e-07 59.3 53 56.6
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 2.2e-07 59.3 53 56.6
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 2.2e-07 59.3 53 56.6
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 2.2e-07 59.3 53 56.6
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.2e-07 59.3 49 59.2
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.2e-07 59.3 89 48.3
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.8e-07 58.9 64 54.7
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 3.7e-07 58.5 56 57.1
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 3.7e-07 58.5 94 40.4
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 3.7e-07 58.5 64 53.1
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 6.3e-07 57.8 64 56.2
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 6.3e-07 57.8 53 58.5
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 6.3e-07 57.8 53 58.5
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 6.3e-07 57.8 53 58.5
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 6.3e-07 57.8 103 41.7
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 6.3e-07 57.8 99 39.4
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 8.3e-07 57.4 64 51.6
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 8.3e-07 57.4 64 51.6
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 8.3e-07 57.4 64 51.6
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.3e-07 57.4 78 51.3
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 8.3e-07 57.4 102 44.1
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-06 57.0 53 56.6
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-06 57.0 53 54.7
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 1.1e-06 57.0 53 54.7
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.1e-06 57.0 62 54.8
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 1.1e-06 57.0 65 55.4
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 1.1e-06 57.0 96 41.7
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-06 57.0 78 50.0
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 1.4e-06 56.6 48 62.5
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 1.4e-06 56.6 79 49.4
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-06 56.6 53 56.6
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.4e-06 56.6 99 40.4
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.4e-06 56.6 73 47.9
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 1.8e-06 56.2 53 50.9
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 1.8e-06 56.2 43 65.1
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 3.1e-06 55.5 59 57.6
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 3.1e-06 55.5 106 38.7
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 4.1e-06 55.1 39 69.2
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 4.1e-06 55.1 64 53.1
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 5.4e-06 54.7 76 43.4
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 7.0e-06 54.3 41 63.4
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 7.0e-06 54.3 41 63.4
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 7.0e-06 54.3 100 43.0
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 7.0e-06 54.3 57 50.9
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 9.1e-06 53.9 63 50.8
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 9.1e-06 53.9 39 69.2


User provided reference genes

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