Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 1.8e-112 409.5 229 100.0
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 1.8e-112 409.5 229 100.0
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 7.4e-87 324.3 232 82.8
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 6.3e-86 321.2 231 79.2
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 1.4e-85 320.1 231 79.2
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.5e-79 300.1 234 77.8
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 9.7e-79 297.4 235 74.5
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 1.7e-78 296.6 236 77.1
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 3.1e-77 292.4 236 76.3
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 4.1e-77 292.0 236 75.4
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 7.0e-77 291.2 235 75.7
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 9.1e-77 290.8 234 73.5
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 1.2e-76 290.4 235 74.5
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.0e-76 289.7 232 75.0
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 5.9e-76 288.1 255 70.6
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 7.7e-76 287.7 236 74.6
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 1.0e-75 287.3 237 73.4
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 1.3e-75 287.0 239 71.5
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 1.7e-75 286.6 239 67.8
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.2e-75 286.2 232 74.6
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 5.0e-75 285.0 236 74.2
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.2e-74 282.3 240 67.5
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 4.2e-74 282.0 231 74.0
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 1.2e-73 280.4 233 73.8
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 2.1e-73 279.6 227 73.6
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 2.7e-73 279.3 240 70.4
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 2.7e-73 279.3 235 74.0
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 6.1e-73 278.1 235 72.3
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.8e-72 276.6 234 72.2
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 2.3e-72 276.2 233 73.4
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 3.9e-72 275.4 270 66.7
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 1.1e-71 273.9 185 85.4
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 5.7e-71 271.6 230 74.8
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 5.7e-71 271.6 241 70.1
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 1.7e-70 270.0 233 71.2
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 2.2e-70 269.6 230 74.3
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 2.2e-70 269.6 179 86.0
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 4.8e-70 268.5 235 65.5
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 4.8e-70 268.5 240 70.0
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 1.4e-69 266.9 234 65.4
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.4e-69 266.9 239 64.9
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.8e-69 266.5 244 65.6
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.8e-69 266.5 239 65.3
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 2.4e-69 266.2 211 77.7
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 3.1e-69 265.8 230 73.5
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 5.3e-69 265.0 215 74.9
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 7.0e-69 264.6 231 68.8
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 7.0e-69 264.6 244 63.5
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 7.0e-69 264.6 170 88.2
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 9.1e-69 264.2 237 69.2
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 9.1e-69 264.2 244 65.2
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.6e-68 263.5 245 63.3
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 4.5e-68 261.9 235 68.9
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 4.5e-68 261.9 235 68.9
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 4.5e-68 261.9 189 79.9
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 5.9e-68 261.5 228 64.9
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 1.0e-67 260.8 240 63.3
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 1.0e-67 260.8 239 66.5
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 1.0e-67 260.8 235 63.0
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.3e-67 260.4 238 68.1
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.7e-67 260.0 238 69.7
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 2.2e-67 259.6 238 68.1
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 2.9e-67 259.2 238 69.3
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 6.5e-67 258.1 238 67.6
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 8.5e-67 257.7 221 68.3
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 8.5e-67 257.7 232 67.2
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 1.9e-66 256.5 232 67.2
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 4.2e-66 255.4 234 62.8
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 5.5e-66 255.0 237 68.4
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 5.5e-66 255.0 232 67.2
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.2e-65 253.8 237 68.8
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.6e-65 253.4 236 67.4
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 2.7e-65 252.7 237 67.9
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 2.7e-65 252.7 270 57.8
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 3.6e-65 252.3 234 66.2
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 8.0e-65 251.1 234 62.0
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.4e-64 250.4 168 85.7
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.4e-64 250.4 182 80.2
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 5.2e-64 248.4 235 63.8
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.0e-63 246.5 235 60.9
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 2.0e-63 246.5 237 66.7
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 2.6e-63 246.1 237 65.8
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 2.6e-63 246.1 237 65.8
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 9.7e-63 244.2 252 65.5
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 2.2e-62 243.0 190 69.5
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 6.3e-62 241.5 236 58.1
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 8.3e-62 241.1 183 75.4
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 5.3e-61 238.4 187 74.9
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 7.0e-61 238.0 196 72.4
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 7.0e-61 238.0 248 58.5
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 4.5e-60 235.3 185 68.6
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 7.7e-60 234.6 184 71.7
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 1.0e-59 234.2 246 56.5
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 1.0e-59 234.2 232 62.5
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 1.7e-59 233.4 188 68.6
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 4.2e-58 228.8 195 65.1
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 9.4e-58 227.6 150 86.7
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 3.6e-57 225.7 197 63.5
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 2.0e-55 219.9 216 60.2
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 8.3e-54 214.5 198 64.1
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.8e-53 213.4 131 84.0
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.6e-52 210.3 207 58.0
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 4.5e-52 208.8 229 59.0
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.8e-51 205.7 232 60.8
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.3e-50 202.6 307 45.6
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 1.4e-48 197.2 241 52.7
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 4.9e-46 188.7 180 57.8
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 2.4e-45 186.4 193 54.9
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 2.3e-43 179.9 255 53.3
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.5e-42 176.4 125 83.2
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.2e-39 167.5 169 58.0
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 3.4e-39 166.0 145 59.3
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 9.2e-37 157.9 171 52.0
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.6e-33 146.0 101 76.2
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.3e-32 143.3 101 76.2
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 5.2e-32 142.1 101 75.2
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.1e-28 130.2 94 72.3
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 7.8e-28 128.3 97 82.5
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.3e-27 127.5 222 42.8
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 8.6e-27 124.8 99 65.7
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 4.0e-24 115.9 201 42.3
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 6.8e-24 115.2 103 55.3
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.2e-23 114.4 74 77.0
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.2e-23 114.4 123 48.0
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 4.4e-23 112.5 139 47.5
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 9.9e-23 111.3 215 37.7
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 2.2e-22 110.2 79 65.8
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 3.7e-22 109.4 152 45.4
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 1.4e-21 107.5 258 34.1
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 2.4e-21 106.7 258 33.7
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 4.1e-21 105.9 259 33.6
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 6.2e-17 92.0 65 73.8
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.1e-16 91.3 207 37.2
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 2.6e-15 86.7 147 38.8
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 1.3e-09 67.8 122 37.7
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 1.6e-09 67.4 51 68.6
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 4.8e-09 65.9 108 44.4
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 8.1e-09 65.1 52 86.5
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.2e-07 61.2 164 34.8
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 2.0e-07 60.5 195 30.3


User provided reference genes

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