Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 2.6e-161 572.0 291 100.0
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.2e-115 419.5 289 73.7
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 6.9e-114 414.5 289 73.4
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 1.8e-106 389.8 313 65.8
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 3.8e-104 382.1 309 68.9
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 4.2e-87 325.5 293 58.7
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.4e-85 320.5 293 58.7
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 3.0e-85 319.3 290 59.0
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.7e-83 313.5 290 57.6
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 4.1e-82 308.9 289 58.5
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 9.1e-82 307.8 308 54.9
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 3.5e-81 305.8 289 57.8
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 5.9e-81 305.1 290 59.0
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 7.7e-81 304.7 292 57.9
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.5e-79 299.7 295 56.6
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 2.5e-79 299.7 308 54.9
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 2.6e-76 289.7 393 44.5
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 4.4e-76 288.9 289 55.4
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.7e-76 288.5 293 54.3
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 3.7e-75 285.8 278 56.5
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 4.1e-74 282.3 307 51.8
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 1.2e-70 270.8 291 52.6
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 6.8e-69 265.0 298 54.4
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.8e-69 265.0 300 51.0
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 8.9e-69 264.6 290 50.7
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 2.6e-68 263.1 298 51.3
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 9.8e-68 261.2 289 51.9
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 1.3e-67 260.8 298 51.3
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.7e-67 260.4 291 52.9
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 3.7e-67 259.2 269 52.4
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 8.3e-67 258.1 290 52.8
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 2.4e-66 256.5 291 50.5
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.4e-66 255.4 299 48.8
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 5.4e-66 255.4 287 54.0
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 9.2e-66 254.6 287 54.4
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 3.5e-65 252.7 259 57.1
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 5.9e-65 251.9 366 43.2
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 5.9e-65 251.9 294 48.3
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 7.8e-65 251.5 316 48.1
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 1.0e-64 251.1 290 48.3
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 1.3e-64 250.8 291 51.2
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 2.3e-64 250.0 237 57.8
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 2.3e-64 250.0 282 51.1
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 2.9e-64 249.6 247 54.3
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.9e-64 249.6 279 50.2
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 3.9e-64 249.2 280 49.3
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 5.0e-64 248.8 292 47.9
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.5e-63 247.3 290 48.6
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 2.5e-63 246.5 291 49.8
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.2e-62 244.2 294 52.4
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 1.6e-62 243.8 290 48.3
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 2.8e-62 243.0 291 50.5
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 8.0e-62 241.5 290 48.6
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 1.0e-61 241.1 389 39.6
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.4e-61 240.7 291 48.8
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 1.2e-60 237.7 291 50.2
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 5.8e-60 235.3 294 48.0
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 1.7e-59 233.8 390 39.7
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 1.7e-59 233.8 332 46.1
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 8.3e-59 231.5 339 43.1
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.9e-58 230.3 290 47.2
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 2.4e-58 229.9 236 52.5
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 7.0e-58 228.4 330 44.2
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 9.2e-58 228.0 322 45.3
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 9.2e-58 228.0 302 47.7
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 1.2e-57 227.6 301 45.8
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 6.0e-57 225.3 338 44.7
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.0e-56 224.6 278 47.5
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 1.0e-56 224.6 291 47.8
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-56 224.2 290 46.2
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 1.3e-56 224.2 286 44.8
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.9e-56 222.6 280 46.4
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.9e-56 222.6 290 45.5
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 8.6e-56 221.5 337 43.3
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 8.6e-56 221.5 340 42.1
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 2.5e-55 219.9 315 44.8
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 3.3e-55 219.5 276 46.4
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 4.3e-55 219.2 271 46.5
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 1.2e-54 217.6 305 43.3
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 1.4e-53 214.2 346 40.2
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 4.0e-53 212.6 371 39.6
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 5.2e-53 212.2 346 39.9
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 1.2e-52 211.1 293 45.1
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.2e-52 211.1 240 49.6
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.2e-52 211.1 286 46.5
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.4e-52 209.5 348 42.8
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.4e-52 209.5 354 40.1
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.7e-51 207.2 299 43.1
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 2.2e-51 206.8 318 42.8
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 4.1e-50 202.6 348 41.1
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 4.1e-50 202.6 170 58.2
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 1.6e-49 200.7 290 44.1
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.1e-49 200.3 175 61.1
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.1e-49 200.3 175 61.1
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 2.1e-49 200.3 313 41.5
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 6.0e-49 198.7 199 53.8
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 6.0e-49 198.7 350 37.4
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.7e-48 197.2 298 43.6
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 2.3e-48 196.8 311 40.8
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 5.1e-48 195.7 290 42.4
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 4.3e-47 192.6 214 50.5
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 7.3e-47 191.8 284 42.3
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 9.5e-47 191.4 350 39.4
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 2.8e-46 189.9 217 47.5
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 8.1e-46 188.3 165 60.6
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.1e-45 186.4 281 43.4
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 6.8e-45 185.3 348 37.6
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 2.0e-44 183.7 373 36.2
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.6e-44 183.3 175 57.7
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 5.8e-44 182.2 374 34.0
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.7e-43 180.6 331 39.9
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 9.2e-42 174.9 350 36.6
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 2.7e-41 173.3 239 44.4
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 3.5e-41 172.9 265 43.4
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 3.9e-40 169.5 231 44.6
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 7.3e-39 165.2 267 43.4
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 7.3e-39 165.2 264 44.3
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 9.6e-39 164.9 267 42.7
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 9.6e-39 164.9 267 42.7
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 9.6e-39 164.9 257 44.7
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 1.8e-37 160.6 246 42.3
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 1.8e-37 160.6 276 37.0
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 1.5e-36 157.5 164 53.0
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 2.6e-36 156.8 236 44.5
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 2.6e-36 156.8 260 42.7
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 4.4e-36 156.0 264 43.2
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 4.4e-36 156.0 264 43.2
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 3.8e-35 152.9 258 44.2
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 6.4e-35 152.1 250 39.2
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 2.4e-34 150.2 257 42.0
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 2.4e-34 150.2 266 38.3
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 7.1e-34 148.7 288 35.1
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 9.3e-34 148.3 169 50.3
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 7.3e-31 138.7 219 44.3
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 7.3e-31 138.7 114 58.8
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 9.6e-31 138.3 289 34.3
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.3e-30 137.9 220 44.1
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 2.1e-30 137.1 230 43.0
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 8.1e-30 135.2 352 30.1
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 2.4e-29 133.7 224 42.9
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 3.1e-29 133.3 266 40.2
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 2.0e-28 130.6 272 31.6
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 2.6e-28 130.2 259 36.7
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 7.6e-28 128.6 118 55.9
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 1.7e-27 127.5 271 35.8
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 1.7e-27 127.5 214 39.3
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.0e-24 118.2 87 62.1
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.7e-24 117.5 222 36.9
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 1.6e-22 110.9 209 34.0
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 5.4e-18 95.9 275 31.6
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 7.1e-18 95.5 248 31.9
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.2e-17 94.7 172 41.3
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 1.6e-17 94.4 159 39.6
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 1.3e-16 91.3 150 40.7
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 6.7e-16 89.0 99 53.5
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.5e-15 87.8 55 80.0
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 2.1e-14 84.0 321 27.7
arahy.Tifrunner.gnm1.ann1.ZI9W5R Arachis hypogaea HOM05D004296 ORTHO05D005045 8.1e-14 82.0 140 37.9
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 6.5e-11 72.4 76 47.4
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.2e-09 68.2 95 46.3
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 4.6e-09 66.2 220 27.3
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 3.0e-08 63.5 133 33.1
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 5.1e-08 62.8 108 40.7
Sabra01G0079000 Salix brachista HOM05D004296 ORTHO05D005045 4.3e-07 59.7 88 40.9
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 9.6e-07 58.5 119 31.9


User provided reference genes

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