Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 3.2e-133 478.4 242 100.0
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 1.6e-116 422.9 247 86.6
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 4.7e-116 421.4 247 86.2
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 2.4e-112 409.1 247 84.6
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 1.1e-104 383.6 245 81.2
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 7.8e-103 377.5 242 80.6
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 2.5e-101 372.5 248 79.8
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 3.3e-101 372.1 246 78.5
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 3.3e-101 372.1 246 78.9
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.6e-100 369.8 248 79.0
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.6e-100 369.8 248 79.0
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.6e-100 369.8 246 77.2
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 8.1e-100 367.5 245 77.6
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.4e-99 366.7 246 78.0
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.8e-99 366.3 244 77.5
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 2.3e-99 365.9 243 79.8
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.3e-99 365.9 245 78.0
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.3e-99 365.9 249 78.3
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 2.3e-99 365.9 245 77.6
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 3.1e-99 365.5 248 77.8
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 3.1e-99 365.5 246 78.0
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 4.0e-99 365.2 246 76.0
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 4.0e-99 365.2 244 78.7
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.2e-99 364.8 245 77.6
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.2e-99 364.8 245 77.6
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 5.2e-99 364.8 248 77.4
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 6.8e-99 364.4 245 77.6
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 1.2e-98 363.6 246 76.4
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.2e-98 363.6 246 77.6
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.5e-98 363.2 262 72.9
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.5e-98 363.2 246 77.6
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.5e-98 363.2 251 76.9
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.0e-98 362.8 246 77.6
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.0e-98 362.8 246 77.6
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.0e-98 362.8 246 77.6
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.6e-98 362.5 246 76.8
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 4.4e-98 361.7 246 77.2
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 4.4e-98 361.7 249 77.5
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 4.4e-98 361.7 246 76.4
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.7e-97 359.8 246 77.2
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.2e-97 359.4 246 76.4
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 2.2e-97 359.4 245 75.5
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 3.7e-97 358.6 245 76.3
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.9e-97 358.2 246 76.8
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 6.4e-97 357.8 249 75.9
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 1.1e-96 357.1 244 77.5
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 1.1e-96 357.1 257 75.1
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.4e-96 356.7 244 76.2
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.1e-96 355.1 247 74.9
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 1.2e-95 353.6 247 74.9
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.1e-95 352.8 253 73.9
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 3.5e-95 352.1 247 74.5
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 7.8e-95 350.9 248 75.0
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 1.3e-94 350.1 252 75.4
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.7e-94 349.7 252 71.8
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.7e-94 349.7 244 74.2
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.3e-94 349.4 245 73.1
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.5e-93 345.9 245 72.7
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 2.5e-93 345.9 241 74.3
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.5e-93 345.9 244 74.6
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 4.3e-93 345.1 253 71.9
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 4.3e-93 345.1 244 75.4
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 5.6e-93 344.7 249 73.5
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.2e-92 343.6 245 72.2
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 4.7e-92 341.7 246 72.4
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 6.2e-92 341.3 247 72.9
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 6.2e-92 341.3 245 73.5
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.4e-91 340.1 246 74.0
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.4e-91 340.1 244 72.5
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.4e-91 340.1 247 72.9
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 3.1e-91 339.0 249 73.5
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.0e-91 338.6 247 72.5
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 6.8e-91 337.8 243 75.3
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 8.9e-91 337.4 244 73.4
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 3.4e-90 335.5 249 73.9
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.4e-90 335.5 237 71.7
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 9.9e-90 334.0 237 74.7
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 6.4e-89 331.3 243 70.4
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 8.4e-89 330.9 243 69.5
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.4e-88 330.1 242 68.6
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 1.9e-88 329.7 237 74.3
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.2e-88 328.9 240 69.6
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 3.2e-88 328.9 245 69.4
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.2e-88 328.9 240 71.2
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 5.4e-88 328.2 236 71.6
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 9.3e-88 327.4 245 68.6
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 9.3e-88 327.4 241 68.0
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.6e-87 326.6 242 69.0
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 1.6e-87 326.6 250 71.2
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 3.5e-87 325.5 244 68.0
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 4.6e-87 325.1 240 68.3
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.6e-87 325.1 236 71.2
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.0e-86 323.9 243 71.6
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.3e-86 323.6 244 68.4
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.3e-86 323.6 241 69.7
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 1.3e-86 323.6 208 77.9
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.7e-86 323.2 243 67.9
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.3e-86 322.8 231 73.6
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 3.9e-86 322.0 248 66.9
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.9e-86 322.0 242 67.8
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 5.1e-86 321.6 311 60.1
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 6.6e-86 321.2 227 74.9
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.7e-86 320.9 241 67.6
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.1e-85 320.5 241 67.6
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.5e-85 320.1 255 69.8
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.5e-85 320.1 244 67.6
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 1.5e-85 320.1 243 67.5
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.9e-85 319.7 241 70.5
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 5.6e-85 318.2 249 69.1
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.6e-84 316.6 244 67.6
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 1.6e-84 316.6 244 69.3
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 2.1e-84 316.2 257 68.9
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 3.6e-84 315.5 255 67.5
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 6.2e-84 314.7 263 67.3
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 8.1e-84 314.3 242 68.2
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 1.8e-83 313.2 250 65.6
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 9.0e-83 310.8 242 66.5
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 9.0e-83 310.8 242 66.5
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 9.0e-83 310.8 242 66.5
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 3.4e-82 308.9 319 57.1
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.8e-82 308.1 205 76.6
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 7.6e-82 307.8 203 75.9
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 4.9e-81 305.1 242 65.7
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.9e-81 305.1 216 71.8
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 2.4e-80 302.8 238 68.9
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 4.2e-80 302.0 227 70.9
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.7e-79 299.3 232 67.2
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 5.1e-78 295.0 240 65.0
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 1.5e-77 293.5 250 62.8
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.3e-73 280.4 250 61.6
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 3.8e-73 278.9 385 46.8
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.9e-72 276.6 247 60.7
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 4.3e-69 265.4 244 59.4
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 7.4e-69 264.6 253 58.1
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.6e-68 263.5 248 58.9
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.8e-68 262.7 229 60.3
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.1e-64 250.8 239 61.1
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 2.7e-63 246.1 242 53.7
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.8e-62 243.4 146 80.1
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 2.5e-61 239.6 136 84.6
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.1e-59 234.2 146 78.1
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.2e-58 230.7 248 52.0
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.7e-57 226.9 213 59.2
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.2e-56 222.2 167 68.3
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 2.1e-55 219.9 244 52.0
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.7e-55 219.5 167 67.1
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.3e-52 210.7 265 48.3
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 3.6e-47 192.6 113 80.5
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 6.7e-46 188.3 283 42.0
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 2.0e-45 186.8 116 80.2
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.5e-45 186.4 193 55.4
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 3.9e-38 162.5 127 70.1
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.0e-33 147.9 128 66.4
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.3e-33 147.5 265 38.1
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 6.5e-33 145.2 268 39.9
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 9.7e-29 131.3 96 72.9
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.7e-25 120.6 95 62.1
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 7.2e-24 115.2 68 79.4
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.2e-23 114.4 86 66.3
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.2e-23 114.4 91 57.1
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 3.5e-18 96.3 73 69.9
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 2.9e-17 93.2 120 52.5
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 5.0e-17 92.4 90 45.6
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.5e-16 90.9 73 65.8
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 2.7e-15 86.7 110 34.5
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.6e-13 80.1 78 59.0
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 2.8e-12 76.6 85 56.5
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.4e-11 74.3 81 49.4
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.8e-11 73.9 130 43.8
Cfa020859 Carpinus fangiana HOM05D021855 ORTHO05D004837 3.8e-09 66.2 68 55.9
Haze_01871 Corylus avellana HOM05D021855 ORTHO05D034161 1.9e-08 63.9 61 60.7
Cfa020856 Carpinus fangiana HOM05D021855 ORTHO05D034161 4.7e-07 59.3 61 55.7
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 4.7e-07 59.3 132 31.1
Cfa020857 Carpinus fangiana HOM05D021855 ORTHO05D004837 6.1e-07 58.9 62 54.8


User provided reference genes

Program Settings