Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 4.2e-298 1027.3 546 100.0
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 6.8e-296 1020.0 546 96.0
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 3.0e-102 376.7 574 45.5
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 3.6e-87 326.6 549 42.1
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 1.1e-80 305.1 525 40.8
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 4.7e-79 299.7 545 40.6
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 3.7e-76 290.0 566 40.3
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 4.8e-76 289.7 550 39.1
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 9.1e-75 285.4 549 39.0
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 2.6e-74 283.9 558 39.6
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.7e-73 281.2 547 38.8
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 4.2e-72 276.6 550 40.2
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.3e-70 270.8 551 37.7
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 5.2e-70 269.6 547 38.8
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 7.0e-67 259.2 575 38.8
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 1.3e-65 255.0 556 37.6
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 2.1e-63 247.7 454 40.1
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 3.4e-61 240.4 485 38.4
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 5.0e-57 226.5 451 38.1
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 2.5e-56 224.2 560 35.4
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 1.8e-54 218.0 544 34.6
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 1.7e-52 211.5 457 37.0
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 8.3e-52 209.1 553 34.0
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 1.4e-51 208.4 454 37.7
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 2.0e-50 204.5 544 32.5
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 6.6e-49 199.5 548 34.1
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 1.5e-48 198.4 551 34.5
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 9.5e-48 195.7 457 35.9
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 1.3e-44 185.3 434 34.8
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 1.9e-43 181.4 347 38.9
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 5.0e-41 173.3 309 40.8
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 2.1e-39 167.9 467 34.0
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 4.7e-39 166.8 551 33.4
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 8.0e-39 166.0 444 35.4
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 1.1e-38 165.6 468 33.3
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 1.7e-36 158.3 462 35.9
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 4.9e-36 156.8 458 33.0
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 1.4e-35 155.2 448 34.6
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 1.4e-35 155.2 441 33.1
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 2.4e-35 154.5 456 30.9
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 5.4e-35 153.3 447 31.5
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.2e-34 152.1 328 36.3
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 1.6e-34 151.8 450 31.3
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 4.6e-34 150.2 599 27.9
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 7.8e-34 149.4 543 31.7
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 3.0e-33 147.5 446 31.2
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 3.0e-33 147.5 351 35.6
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 3.9e-33 147.1 202 46.5
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 8.6e-33 146.0 447 32.4
CSS0009500 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 1.1e-32 145.6 432 33.1
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 1.5e-32 145.2 457 31.1
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 1.5e-32 145.2 457 31.1
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 1.5e-32 145.2 556 29.0
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 4.3e-32 143.7 330 36.4
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 9.5e-32 142.5 562 29.2
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 6.2e-31 139.8 526 31.2
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 1.1e-30 139.0 347 35.2
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 1.8e-30 138.3 333 34.5
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 3.1e-30 137.5 558 29.6
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 3.1e-30 137.5 447 32.4
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 4.0e-30 137.1 559 30.1
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 4.0e-30 137.1 453 31.1
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 5.2e-30 136.7 454 30.8
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 8.9e-30 136.0 452 30.8
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 1.5e-29 135.2 559 30.2
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 2.0e-29 134.8 556 29.1
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 5.8e-29 133.3 551 27.6
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 7.5e-29 132.9 575 29.9
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 7.5e-29 132.9 558 28.5
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 1.3e-28 132.1 540 28.5
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 1.3e-28 132.1 544 30.3
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 2.9e-28 131.0 460 30.7
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 3.2e-27 127.5 442 31.9
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 1.6e-26 125.2 561 28.0
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 2.7e-26 124.4 335 33.7
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 4.6e-26 123.6 257 38.9
FAN18G3895 Fragaria x ananassa HOM05D007047 ORTHO05D009177 3.0e-25 120.9 359 31.5
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 8.6e-25 119.4 328 33.8
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 1.5e-24 118.6 562 27.8
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 2.5e-24 117.9 540 27.2
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 4.3e-24 117.1 329 33.7
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 8.1e-23 112.8 465 29.5
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 1.8e-22 111.7 173 43.9
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 3.1e-22 110.9 460 30.2
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 4.0e-22 110.5 439 28.5
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 6.8e-22 109.8 543 27.1
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 4.4e-21 107.1 471 29.3
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 6.4e-20 103.2 479 27.3
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 5.4e-19 100.1 477 28.9
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 9.2e-19 99.4 451 28.2
Cpa.g.sc89.13 Carica papaya HOM05D007047 ORTHO05D009177 1.3e-17 95.5 168 40.5
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 6.6e-17 93.2 328 30.2
Sc07g0009150 Simmondsia chinensis HOM05D007047 ORTHO05D009177 7.3e-16 89.7 224 34.4
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 2.8e-15 87.8 468 28.0
FvH4_5g19900 Fragaria vesca HOM05D007047 ORTHO05D009177 3.6e-15 87.4 180 37.8
Psat2g156960 Pisum sativum HOM05D007047 ORTHO05D009177 5.8e-13 80.1 165 38.2
Medtr5g013080 Medicago truncatula HOM05D007047 ORTHO05D009177 4.9e-12 77.0 52 65.4
unitig_744.g24476 Utricularia gibba HOM05D007047 ORTHO05D009177 4.9e-12 77.0 338 31.4
Psat0s1776g0120 Pisum sativum HOM05D007047 ORTHO05D009177 6.4e-12 76.6 163 38.0
FAN18G3996 Fragaria x ananassa HOM05D007047 ORTHO05D009177 3.2e-11 74.3 144 38.2
Ciclev10023353m.g Citrus clementina HOM05D007047 ORTHO05D009177 2.1e-10 71.6 107 42.1
Cpa.g.sc1463.1 Carica papaya HOM05D007047 ORTHO05D009177 1.7e-09 68.6 111 41.4
HPP92_022107 Vanilla planifolia HOM05D007047 ORTHO05D009177 3.9e-09 67.4 153 30.1
ECA240G0572 Erigeron canadensis HOM05D007047 ORTHO05D009177 5.6e-08 63.5 136 36.8
Lsat_1_v5_gn_4_126100 Lactuca sativa HOM05D007047 ORTHO05D009177 1.3e-07 62.4 218 33.5
Thhalv10027163m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 1.4e-06 58.9 49 53.1
Os11g0249300 Oryza sativa ssp. japonica HOM05D007047 ORTHO05D009177 3.1e-06 57.8 404 25.5
Zm00001eb428340 Zea mays HOM05D007047 ORTHO05D009177 4.0e-06 57.4 177 29.4


User provided reference genes

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