Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 4.8e-182 641.0 310 100.0
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 1.8e-152 542.7 266 97.7
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 1.0e-131 473.8 266 88.0
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 1.9e-109 399.8 252 73.0
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 9.7e-106 387.5 253 70.8
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 2.7e-92 342.8 247 64.4
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 2.7e-92 342.8 259 62.9
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 1.4e-91 340.5 266 60.9
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 8.8e-91 337.8 257 61.5
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 1.5e-90 337.0 266 59.0
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 2.2e-89 333.2 239 62.3
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.6e-87 326.2 257 60.7
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 4.5e-87 325.5 254 60.6
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 5.0e-86 322.0 266 57.9
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 1.4e-85 320.5 273 57.1
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 5.5e-85 318.5 257 58.0
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 4.7e-84 315.5 253 57.3
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 6.1e-84 315.1 278 57.2
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 3.9e-83 312.4 281 53.0
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 8.8e-83 311.2 253 56.1
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 9.7e-82 307.8 248 60.5
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 1.7e-81 307.0 272 55.1
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 3.7e-81 305.8 268 54.9
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 4.8e-81 305.4 248 60.1
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 2.4e-80 303.1 255 57.3
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 5.3e-80 302.0 262 56.9
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 5.3e-80 302.0 267 55.8
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 5.3e-80 302.0 234 58.5
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 7.0e-80 301.6 269 53.9
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 2.0e-79 300.1 246 55.7
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 3.5e-79 299.3 263 57.4
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 2.9e-78 296.2 266 54.5
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 6.5e-78 295.0 253 56.1
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 8.5e-78 294.7 263 54.0
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 8.5e-78 294.7 244 57.0
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 6.1e-76 288.5 256 54.7
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 2.3e-75 286.6 265 52.5
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 1.2e-74 284.3 256 53.5
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 3.3e-74 282.7 241 53.9
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 5.7e-74 282.0 260 54.2
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 5.7e-74 282.0 240 52.5
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 3.7e-73 279.3 233 55.8
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 5.3e-72 275.4 252 49.6
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.2e-71 274.2 252 52.8
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 1.6e-71 273.9 265 50.9
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 1.6e-71 273.9 249 51.0
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 2.7e-71 273.1 255 51.4
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 4.5e-71 272.3 254 51.2
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 5.0e-70 268.9 258 48.1
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 1.9e-69 266.9 267 54.7
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 1.9e-69 266.9 256 50.4
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 7.2e-69 265.0 255 49.4
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 1.6e-68 263.8 277 46.6
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 2.1e-68 263.5 267 47.6
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 2.7e-68 263.1 247 48.2
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 2.7e-68 263.1 258 48.4
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 1.4e-67 260.8 274 46.4
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 4.0e-67 259.2 259 48.3
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 8.8e-67 258.1 189 61.4
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 8.8e-67 258.1 260 48.1
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 2.6e-66 256.5 254 47.6
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 2.8e-65 253.1 270 47.8
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 3.7e-65 252.7 257 47.1
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 4.8e-65 252.3 266 47.0
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 6.3e-65 251.9 268 45.9
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 1.1e-64 251.1 266 47.4
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 1.8e-64 250.4 259 46.3
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 1.8e-64 250.4 255 46.7
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 4.1e-64 249.2 266 46.2
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 4.1e-64 249.2 278 47.8
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 5.4e-64 248.8 256 46.5
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 5.4e-64 248.8 261 46.4
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 7.0e-64 248.4 260 46.2
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 7.0e-64 248.4 278 46.4
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 1.2e-63 247.7 230 48.3
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 1.6e-63 247.3 259 46.3
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 2.0e-63 246.9 260 46.5
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 5.9e-63 245.4 253 48.6
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 5.9e-63 245.4 255 46.7
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 5.9e-63 245.4 240 47.9
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.5e-61 240.0 227 53.7
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.3e-61 239.6 253 48.6
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 4.2e-61 239.2 270 45.2
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 1.2e-60 237.7 239 45.2
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 6.1e-60 235.3 262 43.5
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 1.8e-59 233.8 257 46.3
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 2.3e-59 233.4 243 46.9
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 1.3e-57 227.6 232 49.1
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 2.8e-57 226.5 255 44.7
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 1.4e-56 224.2 270 45.2
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 1.3e-54 217.6 259 40.5
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 7.3e-53 211.8 313 39.6
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 9.8e-50 201.4 266 42.5
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 1.5e-45 187.6 254 37.4
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 7.3e-45 185.3 139 63.3
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 6.4e-41 172.2 137 54.0
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 6.4e-41 172.2 257 32.7
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 1.1e-40 171.4 127 59.1
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 1.4e-35 154.5 138 44.9
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 6.8e-35 152.1 227 38.3
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 2.1e-31 140.6 203 35.5
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 2.1e-31 140.6 195 39.0
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 3.5e-31 139.8 276 32.2
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 6.0e-31 139.0 257 36.2
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 1.1e-29 134.8 232 31.9
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 1.2e-28 131.3 127 53.5
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.6e-28 131.0 87 70.1
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 2.8e-28 130.2 116 50.0
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 2.4e-24 117.1 202 29.2
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 9.2e-24 115.2 84 54.8
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.6e-23 114.4 88 54.5
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 1.7e-22 110.9 85 56.5
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 1.2e-20 104.8 95 45.3
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 8.1e-20 102.1 115 41.7
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 1.2e-18 98.2 78 50.0
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 9.9e-18 95.1 69 53.6
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 4.9e-17 92.8 69 52.2
arahy.Tifrunner.gnm1.ann1.HID3FF Arachis hypogaea HOM05D006624 ORTHO05D008209 8.7e-14 82.0 123 39.0
Gohir.D11G288766 Gossypium hirsutum HOM05D006624 ORTHO05D008209 6.9e-11 72.4 67 58.2
Gohir.D07G075451 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.5e-10 71.2 67 56.7
Gohir.D07G137350 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.5e-10 71.2 67 56.7
Gohir.D08G202425 Gossypium hirsutum HOM05D006624 ORTHO05D008209 2.0e-10 70.9 67 56.7


User provided reference genes

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