Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 2.8e-227 791.6 386 100.0
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 3.5e-198 694.9 379 91.0
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 1.4e-170 603.2 391 74.7
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 3.8e-152 542.0 266 97.7
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 2.8e-147 525.8 359 68.2
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 8.2e-147 524.2 329 74.8
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 9.4e-143 510.8 368 67.4
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 4.7e-142 508.4 378 63.8
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 2.3e-141 506.1 386 63.2
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 2.6e-140 502.7 379 63.9
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 1.0e-136 490.7 360 65.8
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 6.5e-136 488.0 371 65.2
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 7.2e-135 484.6 387 61.5
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 3.6e-134 482.3 376 60.6
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 8.8e-133 477.6 390 63.1
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 4.4e-132 475.3 376 59.8
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 4.4e-132 475.3 379 63.1
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 3.7e-131 472.2 384 60.7
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 1.4e-130 470.3 392 59.4
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 1.8e-130 469.9 389 63.5
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 1.8e-130 469.9 379 63.3
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 5.4e-130 468.4 396 57.8
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 4.5e-129 465.3 388 58.0
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 7.7e-129 464.5 351 64.4
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 2.9e-128 462.6 383 59.8
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 3.8e-128 462.2 373 60.9
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 3.8e-128 462.2 351 64.1
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 5.0e-128 461.8 380 59.5
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 8.6e-128 461.1 383 59.3
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 1.1e-127 460.7 365 61.9
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 1.1e-127 460.7 346 63.3
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 4.2e-127 458.8 360 63.1
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 1.6e-126 456.8 386 59.8
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 6.1e-126 454.9 387 57.9
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 8.0e-126 454.5 388 60.1
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 3.0e-125 452.6 384 59.1
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 3.0e-125 452.6 377 59.2
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 1.2e-124 450.7 355 60.3
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 1.3e-123 447.2 381 59.6
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 4.9e-123 445.3 378 58.2
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 6.6e-120 434.9 447 51.0
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.2e-118 430.6 309 67.6
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 2.8e-118 429.5 367 55.9
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 8.0e-118 427.9 377 56.0
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 8.9e-117 424.5 394 54.1
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 5.7e-116 421.8 401 53.1
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 1.7e-115 420.2 351 55.6
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.7e-115 420.2 368 56.5
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 4.9e-115 418.7 386 54.4
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 1.8e-114 416.8 360 56.1
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 7.0e-114 414.8 390 54.9
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 4.6e-113 412.1 369 53.9
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 3.3e-111 406.0 367 52.9
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 1.6e-110 403.7 372 52.2
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 2.8e-110 402.9 372 51.9
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 4.7e-110 402.1 356 53.9
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 4.7e-110 402.1 372 51.9
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 8.0e-110 401.4 374 52.1
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 4.4e-108 395.6 379 52.8
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 7.5e-108 394.8 379 51.5
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 4.9e-107 392.1 356 52.2
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 4.1e-106 389.0 356 52.5
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 5.4e-106 388.7 373 50.7
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 5.4e-106 388.7 382 50.8
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 5.4e-106 388.7 344 53.2
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 7.0e-106 388.3 341 55.1
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 1.2e-105 387.5 356 52.8
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 1.6e-105 387.1 358 52.0
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 1.6e-105 387.1 372 53.8
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 6.0e-105 385.2 358 52.0
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 2.3e-104 383.3 353 52.1
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 3.0e-104 382.9 363 52.6
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 3.0e-104 382.9 372 53.5
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 5.6e-103 378.6 343 53.1
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 3.6e-102 375.9 391 49.6
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 6.2e-102 375.2 384 49.5
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 8.1e-102 374.8 365 51.5
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 1.3e-99 367.5 375 52.0
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 2.2e-99 366.7 377 48.5
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 8.3e-99 364.8 360 50.8
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 1.1e-98 364.4 350 50.6
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 5.4e-98 362.1 330 52.4
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 5.4e-98 362.1 379 51.5
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 1.9e-95 353.6 333 52.0
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 3.1e-93 346.3 336 51.5
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 3.5e-89 332.8 250 62.4
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 1.6e-86 323.9 326 47.5
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 3.6e-86 322.8 409 45.2
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 2.7e-81 306.6 456 37.1
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 4.6e-81 305.8 312 48.1
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 2.5e-79 300.1 359 40.9
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 7.1e-74 282.0 257 55.3
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 5.1e-72 275.8 283 47.0
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 1.6e-70 270.8 192 66.1
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 6.4e-67 258.8 201 62.7
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 3.0e-64 250.0 312 40.7
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 6.2e-62 242.3 369 38.2
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 2.4e-61 240.4 229 53.3
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 1.2e-60 238.0 312 40.7
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 2.6e-60 236.9 209 52.6
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 6.5e-59 232.3 301 46.5
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 7.9e-57 225.3 230 48.3
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 9.0e-53 211.8 313 39.9
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 2.0e-44 184.1 228 43.4
Hma1.2p1_0414F.1_g147760 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 1.3e-43 181.4 159 57.9
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 5.1e-40 169.5 127 57.5
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 4.4e-39 166.4 127 66.1
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 2.0e-36 157.5 248 33.5
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 5.0e-35 152.9 229 38.0
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 7.4e-31 139.0 203 35.5
arahy.Tifrunner.gnm1.ann1.PE2WYP Arachis hypogaea HOM05D006624 ORTHO05D008209 7.4e-31 139.0 195 39.0
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 9.7e-31 138.7 259 35.9
Peaxi162Scf00084g00918 Petunia axillaris HOM05D006624 ORTHO05D008209 7.0e-29 132.5 124 54.8
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.2e-23 115.2 84 56.0
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 2.8e-22 110.5 85 57.6
Os03g0100050 Oryza sativa ssp. japonica HOM05D006624 ORTHO05D008209 1.0e-19 102.1 115 41.7
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.2e-17 95.1 69 55.1
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 6.1e-17 92.8 69 53.6
arahy.Tifrunner.gnm1.ann1.HID3FF Arachis hypogaea HOM05D006624 ORTHO05D008209 3.1e-13 80.5 123 39.0
Gohir.D11G288766 Gossypium hirsutum HOM05D006624 ORTHO05D008209 6.6e-11 72.8 69 55.1
Gohir.D07G075451 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.5e-10 71.6 69 53.6
Gohir.D07G137350 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.5e-10 71.6 69 53.6
Gohir.D08G202425 Gossypium hirsutum HOM05D006624 ORTHO05D008209 1.9e-10 71.2 69 53.6
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 4.4e-07 60.1 46 54.3


User provided reference genes

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