Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p006401 Quercus lobata HOM05D006861 ORTHO05D008620 2.3e-176 622.1 310 100.0
QL12p006269 Quercus lobata HOM05D006861 ORTHO05D008620 8.4e-126 454.1 310 78.4
Cfa012408 Carpinus fangiana HOM05D006861 ORTHO05D008620 7.4e-90 334.7 316 60.1
Haze_08270 Corylus avellana HOM05D006861 ORTHO05D008620 7.4e-90 334.7 315 61.3
CiPaw.11G090800 Carya illinoinensis HOM05D006861 ORTHO05D008620 1.5e-87 327.0 285 61.4
Prupe.5G041200 Prunus persica HOM05D006861 ORTHO05D008620 1.1e-85 320.9 313 57.2
Manes.17G013800 Manihot esculenta HOM05D006861 ORTHO05D008620 1.9e-85 320.1 310 58.4
GSVIVG01013176001 Vitis vinifera HOM05D006861 ORTHO05D008620 1.9e-85 320.1 190 80.5
FvH4_5g21620 Fragaria vesca HOM05D006861 ORTHO05D008620 1.2e-84 317.4 280 60.0
CANSAT21G0325 Cannabis sativa HOM05D006861 ORTHO05D008620 2.1e-84 316.6 312 56.7
FAN18G0349 Fragaria x ananassa HOM05D006861 ORTHO05D008620 4.7e-84 315.5 279 59.9
RcHm_v2.0_Chr7g0209081 Rosa chinensis HOM05D006861 ORTHO05D008620 1.0e-83 314.3 312 57.1
Potri.003G089400 Populus trichocarpa HOM05D006861 ORTHO05D008620 1.1e-82 310.8 185 82.2
Sabra03G0059200 Salix brachista HOM05D006861 ORTHO05D008620 1.5e-82 310.5 311 56.3
FAN04G0264 Fragaria x ananassa HOM05D006861 ORTHO05D008620 1.7e-81 307.0 281 58.7
MD06G1031100 Malus domestica HOM05D006861 ORTHO05D008620 2.8e-81 306.2 278 60.4
Medtr4g098640 Medicago truncatula HOM05D006861 ORTHO05D008620 3.7e-81 305.8 292 57.9
arahy.Tifrunner.gnm1.ann1.A00F14 Arachis hypogaea HOM05D006861 ORTHO05D008620 8.2e-81 304.7 292 57.5
CSS0041220 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 1.1e-80 304.3 185 78.9
Dinv28930 Davidia involucrata HOM05D006861 ORTHO05D008620 1.8e-80 303.5 285 58.6
FAN08G0129 Fragaria x ananassa HOM05D006861 ORTHO05D008620 1.8e-80 303.5 280 58.9
CSS0014670 Camellia sinensis var. sinensis HOM05D006861 ORTHO05D008620 3.1e-80 302.8 185 78.4
Lj4g0014575 Lotus japonicus HOM05D006861 ORTHO05D008620 1.2e-79 300.8 292 56.5
Glyma.05G113600 Glycine max HOM05D006861 ORTHO05D008620 2.0e-79 300.1 284 57.7
arahy.Tifrunner.gnm1.ann1.P9U8RJ Arachis hypogaea HOM05D006861 ORTHO05D008620 2.6e-79 299.7 292 56.5
Hma1.2p1_0585F.1_g183570 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 2.6e-79 299.7 185 77.8
Psat4g079280 Pisum sativum HOM05D006861 ORTHO05D008620 2.6e-79 299.7 286 57.3
Glyma.17G153700 Glycine max HOM05D006861 ORTHO05D008620 3.5e-79 299.3 284 58.1
Actinidia14818 Actinidia chinensis HOM05D006861 ORTHO05D008620 4.5e-79 298.9 185 77.3
TPR.G28655 Trifolium pratense HOM05D006861 ORTHO05D008620 1.7e-78 297.0 303 56.1
Thecc.03G231500 Theobroma cacao HOM05D006861 ORTHO05D008620 2.9e-78 296.2 310 53.5
FAN13G1018 Fragaria x ananassa HOM05D006861 ORTHO05D008620 3.8e-78 295.8 279 57.3
Ca_22062_v3 Cicer arietinum L. HOM05D006861 ORTHO05D008620 2.1e-76 290.0 185 76.2
Eucgr.D02180 Eucalyptus grandis HOM05D006861 ORTHO05D008620 2.7e-76 289.7 278 57.6
VMungo0251G0361 Vigna mungo HOM05D006861 ORTHO05D008620 3.6e-76 289.3 284 56.0
Lalb_Chr09g0329521 Lupinus albus HOM05D006861 ORTHO05D008620 1.8e-75 287.0 185 75.1
TAR629G3318 Trochodendron aralioides HOM05D006861 ORTHO05D008620 2.3e-75 286.6 284 56.7
THA.LOC104807964 Tarenaya hassleriana HOM05D006861 ORTHO05D008620 3.0e-75 286.2 285 54.4
EL10Ac5g12163 Beta vulgaris HOM05D006861 ORTHO05D008620 4.0e-75 285.8 281 55.5
Lsat_1_v5_gn_8_112001 Lactuca sativa HOM05D006861 ORTHO05D008620 5.2e-75 285.4 185 72.4
Duzib068G0493 Durio zibethinus HOM05D006861 ORTHO05D008620 6.7e-75 285.0 311 53.1
Gohir.D03G170200 Gossypium hirsutum HOM05D006861 ORTHO05D008620 8.8e-75 284.6 310 52.3
vmacro14159 Vaccinium macrocarpon HOM05D006861 ORTHO05D008620 8.8e-75 284.6 206 68.4
ClCG10G001830 Citrullus lanatus HOM05D006861 ORTHO05D008620 2.0e-74 283.5 310 51.6
Gohir.A12G209800 Gossypium hirsutum HOM05D006861 ORTHO05D008620 2.0e-74 283.5 310 52.9
PSO063G6338 Papaver somniferum HOM05D006861 ORTHO05D008620 2.0e-74 283.5 279 55.9
Duzib205G0961 Durio zibethinus HOM05D006861 ORTHO05D008620 2.6e-74 283.1 310 52.3
PSO782G3300 Papaver somniferum HOM05D006861 ORTHO05D008620 3.3e-74 282.7 279 55.9
Rhsim07G0124500 Rhododendron simsii HOM05D006861 ORTHO05D008620 3.3e-74 282.7 307 51.8
AUR62007255 Chenopodium quinoa HOM05D006861 ORTHO05D008620 4.4e-74 282.3 276 54.7
Gorai.003G180500 Gossypium raimondii HOM05D006861 ORTHO05D008620 4.4e-74 282.3 310 51.9
Ciclev10032685m.g Citrus clementina HOM05D006861 ORTHO05D008620 1.7e-73 280.4 286 54.9
Aqoxy3G02463 Aquilegia oxysepala HOM05D006861 ORTHO05D008620 2.2e-73 280.0 185 74.6
CsaV3_3G001910 Cucumis sativus L. HOM05D006861 ORTHO05D008620 2.2e-73 280.0 310 51.0
Migut.A01006 Erythranthe guttata HOM05D006861 ORTHO05D008620 2.8e-73 279.6 188 70.2
DCAR_008287 Daucus carota HOM05D006861 ORTHO05D008620 3.7e-73 279.3 184 72.3
Cc08_g02400 Coffea canephora HOM05D006861 ORTHO05D008620 4.8e-73 278.9 185 74.6
MELO3C013865.2 Cucumis melo HOM05D006861 ORTHO05D008620 8.2e-73 278.1 310 51.0
HanXRQChr16g0511531 Helianthus annuus HOM05D006861 ORTHO05D008620 8.2e-73 278.1 185 69.7
Gohir.A03G002100 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.4e-72 277.3 310 51.3
Gohir.D12G212500 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.4e-72 277.3 310 51.9
Sc07g0008780 Simmondsia chinensis HOM05D006861 ORTHO05D008620 1.4e-72 277.3 298 50.3
ATR0049G013 Amborella trichopoda HOM05D006861 ORTHO05D008620 2.4e-72 276.6 188 67.0
Ah.12g054700 Amaranthus hybridus HOM05D006861 ORTHO05D008620 4.1e-72 275.8 296 52.7
MSTRG.12154 Avicennia marina HOM05D006861 ORTHO05D008620 9.1e-72 274.6 286 50.3
Sed0027053 Sechium edule HOM05D006861 ORTHO05D008620 2.0e-71 273.5 308 51.0
Aa31LG9G15370 Aethionema arabicum HOM05D006861 ORTHO05D008620 5.9e-71 271.9 283 53.0
Gorai.008G228100 Gossypium raimondii HOM05D006861 ORTHO05D008620 1.0e-70 271.2 201 69.7
SalBow6G5529 Salvia bowleyana HOM05D006861 ORTHO05D008620 6.5e-70 268.5 190 68.9
SGA_v2.0_scaffold198G41105 Striga asiatica HOM05D006861 ORTHO05D008620 1.1e-69 267.7 191 68.6
Nitab4.5_0000535g0140 Nicotiana tabacum HOM05D006861 ORTHO05D008620 1.5e-69 267.3 295 48.8
ECA233G2855 Erigeron canadensis HOM05D006861 ORTHO05D008620 1.9e-69 266.9 187 67.9
Nitab4.5_0007026g0050 Nicotiana tabacum HOM05D006861 ORTHO05D008620 5.5e-69 265.4 193 65.8
COL.COLO4_17076 Corchorus olitorius HOM05D006861 ORTHO05D008620 3.6e-68 262.7 310 48.7
Carub.0004s1705 Capsella rubella HOM05D006861 ORTHO05D008620 1.0e-67 261.2 284 51.8
TWI60G1564 Tripterygium wilfordii HOM05D006861 ORTHO05D008620 2.3e-67 260.0 161 77.6
AL4G31410 Arabidopsis lyrata HOM05D006861 ORTHO05D008620 5.2e-67 258.8 284 50.7
AT2G35360 Arabidopsis thaliana HOM05D006861 ORTHO05D008620 6.8e-67 258.5 284 51.8
A05p10410 Brassica napus HOM05D006861 ORTHO05D008620 4.4e-66 255.8 283 49.8
Peaxi162Scf00102g00630 Petunia axillaris HOM05D006861 ORTHO05D008620 4.4e-66 255.8 194 63.9
PGSC0003DMG400020500 Solanum tuberosum HOM05D006861 ORTHO05D008620 5.7e-66 255.4 188 64.4
CDE12G0071 Ceratophyllum demersum HOM05D006861 ORTHO05D008620 7.5e-66 255.0 294 47.6
Sp4g17580 Schrenkiella parvula HOM05D006861 ORTHO05D008620 7.5e-66 255.0 284 50.7
CAN.G845.34 Capsicum annuum HOM05D006861 ORTHO05D008620 2.2e-65 253.4 188 63.8
Thhalv10017211m.g Eutrema salsugineum HOM05D006861 ORTHO05D008620 2.8e-65 253.1 284 50.0
Nn6g33632 Nelumbo nucifera HOM05D006861 ORTHO05D008620 2.8e-65 253.1 339 45.1
BcaB02g09437 Brassica carinata HOM05D006861 ORTHO05D008620 4.8e-65 252.3 284 49.6
CARHR129520 Cardamine hirsuta HOM05D006861 ORTHO05D008620 6.3e-65 251.9 285 50.2
BcaC02g11640 Brassica carinata HOM05D006861 ORTHO05D008620 1.8e-64 250.4 283 49.5
C04p12840 Brassica napus HOM05D006861 ORTHO05D008620 1.8e-64 250.4 283 49.5
BolC4t22928H Brassica oleracea HOM05D006861 ORTHO05D008620 1.8e-64 250.4 283 49.5
BraA05t19976Z Brassica rapa HOM05D006861 ORTHO05D008620 5.4e-64 248.8 283 49.1
Solyc08g007030.3 Solanum lycopersicum HOM05D006861 ORTHO05D008620 7.0e-64 248.4 188 62.8
Sopen08g002990 Solanum pennellii HOM05D006861 ORTHO05D008620 1.2e-63 247.7 188 62.8
Phvul.003G229300 Phaseolus vulgaris HOM05D006861 ORTHO05D008620 1.6e-63 247.3 157 77.1
Lj2A243G18 Lonicera japonica HOM05D006861 ORTHO05D008620 5.9e-63 245.4 143 81.1
HPP92_028475 Vanilla planifolia HOM05D006861 ORTHO05D008620 9.5e-61 238.0 193 59.6
HPP92_027725 Vanilla planifolia HOM05D006861 ORTHO05D008620 1.6e-60 237.3 193 59.6
Actinidia09224 Actinidia chinensis HOM05D006861 ORTHO05D008620 2.3e-59 233.4 139 79.1
AUR62018744 Chenopodium quinoa HOM05D006861 ORTHO05D008620 5.2e-59 232.3 278 48.9
Hma1.2p1_0585F.1_g183580 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 1.5e-58 230.7 185 64.9
Cpa.g.sc90.59 Carica papaya HOM05D006861 ORTHO05D008620 3.4e-58 229.6 144 72.9
Zm00001eb307090 Zea mays HOM05D006861 ORTHO05D008620 3.4e-58 229.6 193 59.1
Dinv25198 Davidia involucrata HOM05D006861 ORTHO05D008620 4.4e-58 229.2 143 77.6
Gohir.A09G039700 Gossypium hirsutum HOM05D006861 ORTHO05D008620 1.7e-57 227.3 150 74.7
SEGI_11276 Sequoiadendron giganteum HOM05D006861 ORTHO05D008620 1.1e-56 224.6 187 56.7
Os09g0573100 Oryza sativa ssp. japonica HOM05D006861 ORTHO05D008620 9.2e-56 221.5 190 57.9
Pp3c1_27050 Physcomitrium patens HOM05D006861 ORTHO05D008620 3.0e-51 206.5 187 54.0
Hma1.2p1_2232F.1_g317620 Hydrangea macrophylla HOM05D006861 ORTHO05D008620 6.8e-51 205.3 212 51.9
Atru.BG.44.p Acer truncatum HOM05D006861 ORTHO05D008620 2.6e-42 176.8 115 73.0
HanXRQChr16g0517491 Helianthus annuus HOM05D006861 ORTHO05D008620 1.7e-41 174.1 127 63.8
CBR_g57857 Chara braunii HOM05D006861 ORTHO05D008620 3.1e-27 126.7 171 40.9
Cre12.g533400 Chlamydomonas reinhardtii HOM05D006861 ORTHO05D008620 1.0e-14 85.1 180 32.2
PRCOL_00000188 Prasinoderma coloniale HOM05D006861 ORTHO05D008620 2.1e-12 77.4 118 37.3
Gohir.A01G114301 Gossypium hirsutum HOM05D006861 ORTHO05D008620 2.8e-12 77.0 62 64.5


User provided reference genes

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