Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 6.0e-104 380.9 205 100.0
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 3.1e-52 209.1 233 54.5
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 3.1e-52 209.1 230 56.5
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 5.3e-52 208.4 232 56.9
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 2.6e-51 206.1 231 53.7
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.0e-50 204.1 239 57.7
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 2.9e-50 202.6 230 56.5
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 5.0e-50 201.8 227 55.9
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 5.0e-50 201.8 227 55.9
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 3.2e-49 199.1 237 52.7
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 3.2e-49 199.1 237 52.7
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 3.2e-49 199.1 232 53.4
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 2.7e-48 196.1 222 57.7
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 3.6e-48 195.7 230 53.9
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 4.6e-48 195.3 225 57.8
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 4.6e-48 195.3 239 54.0
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.4e-47 193.7 236 52.5
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 1.4e-47 193.7 232 55.6
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 3.9e-47 192.2 232 53.0
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.1e-46 190.7 226 56.2
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 2.0e-46 189.9 227 55.1
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 2.6e-46 189.5 236 57.6
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 4.4e-46 188.7 234 53.0
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 5.7e-46 188.3 227 55.9
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.3e-45 187.2 219 58.0
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 1.3e-45 187.2 242 49.6
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.3e-45 187.2 242 49.6
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.7e-45 185.7 242 49.6
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.7e-45 185.7 222 54.5
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.7e-45 185.7 222 54.5
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 4.8e-45 185.3 228 57.0
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 6.3e-45 184.9 223 53.4
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.1e-44 184.1 242 49.2
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 3.1e-44 182.6 240 51.7
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.1e-44 182.2 242 48.3
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 4.1e-44 182.2 248 51.6
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 5.3e-44 181.8 242 52.1
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 5.3e-44 181.8 241 52.3
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 6.9e-44 181.4 222 50.9
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.2e-43 180.6 241 51.9
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 1.5e-43 180.3 220 57.3
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.5e-43 180.3 234 54.7
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 3.4e-43 179.1 244 53.3
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.5e-43 178.7 240 50.8
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 5.9e-43 178.3 230 53.5
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.0e-42 177.6 227 54.2
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.1e-41 174.1 233 51.1
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.1e-41 174.1 236 50.4
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.4e-41 173.7 208 52.9
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.9e-41 173.3 210 52.9
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.9e-41 173.3 227 53.7
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 3.2e-41 172.6 248 49.6
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 4.2e-41 172.2 228 48.7
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 5.5e-41 171.8 248 48.0
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 7.2e-41 171.4 235 50.6
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 9.4e-41 171.0 231 48.1
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.2e-40 170.6 223 51.1
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 1.6e-40 170.2 226 49.1
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 1.6e-40 170.2 207 48.8
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 2.7e-40 169.5 227 55.5
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.4e-39 167.2 222 54.1
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.3e-39 166.4 220 47.3
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 3.0e-39 166.0 208 53.4
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 1.1e-38 164.1 232 46.6
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 1.5e-38 163.7 217 45.2
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 9.7e-38 161.0 204 54.4
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.7e-37 160.2 230 44.3
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.7e-37 160.2 242 48.8
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.2e-37 159.8 224 49.1
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.3e-37 158.3 226 48.2
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 8.2e-37 157.9 221 45.2
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.1e-36 157.5 224 43.8
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 3.1e-36 156.0 223 51.1
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.1e-36 156.0 215 50.7
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 4.1e-36 155.6 213 47.9
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 7.0e-36 154.8 234 50.4
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 2.0e-35 153.3 207 50.7
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 7.7e-35 151.4 232 44.0
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.3e-34 150.6 219 42.9
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.5e-34 148.3 232 43.5
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.5e-33 147.1 212 51.9
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.5e-33 147.1 237 44.7
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 4.2e-33 145.6 201 47.8
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 5.5e-33 145.2 232 44.8
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.2e-32 144.1 215 47.0
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 3.6e-32 142.5 211 43.1
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 6.1e-32 141.7 241 47.7
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.0e-31 141.0 238 42.4
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.5e-30 137.1 256 44.5
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.5e-30 137.1 179 54.7
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.0e-30 136.7 263 42.2
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 3.3e-30 136.0 230 43.9
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 4.4e-30 135.6 213 44.1
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 9.7e-30 134.4 211 42.2
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.7e-29 133.7 209 45.9
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 2.8e-29 132.9 240 39.2
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 3.7e-29 132.5 216 47.7
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 8.2e-29 131.3 174 52.3
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 1.1e-28 131.0 228 43.4
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.8e-28 130.2 211 38.9
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 7.0e-28 128.3 221 38.9
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 2.7e-27 126.3 255 39.2
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 4.5e-27 125.6 217 41.5
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 4.5e-27 125.6 219 39.7
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 7.7e-27 124.8 215 40.5
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 2.2e-26 123.2 215 42.8
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 2.2e-26 123.2 209 44.5
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 2.2e-26 123.2 209 44.5
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 2.2e-26 123.2 219 47.5
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 3.8e-26 122.5 217 41.9
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.5e-25 120.6 139 51.8
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.9e-25 120.2 225 37.8
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 2.5e-25 119.8 205 41.5
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 2.5e-25 119.8 205 41.5
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 2.5e-25 119.8 207 38.6
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 2.5e-25 119.8 205 41.5
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 4.2e-25 119.0 209 38.8
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 4.2e-25 119.0 209 38.8
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.2e-24 117.5 197 41.6
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 1.2e-24 117.5 195 42.1
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 1.2e-24 117.5 195 42.1
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 2.7e-24 116.3 239 42.7
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 1.4e-23 114.0 211 36.0
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.8e-23 113.6 196 39.8
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 4.0e-23 112.5 195 40.5
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 1.5e-22 110.5 233 36.1
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 2.0e-22 110.2 195 40.5
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 3.4e-22 109.4 236 35.6
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 5.7e-22 108.6 194 40.2
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 9.8e-22 107.8 193 39.4
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.7e-21 107.1 157 38.2
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 4.8e-21 105.5 212 36.8
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 8.3e-21 104.8 205 34.6
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 8.3e-21 104.8 200 41.0
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.6e-19 100.5 207 35.7
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 2.0e-19 100.1 190 40.5
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 4.5e-19 99.0 248 32.7
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 3.8e-18 95.9 205 35.6
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.5e-17 94.0 121 54.5
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 2.8e-16 89.7 177 41.2
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 3.6e-16 89.4 225 36.0
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.8e-15 87.0 113 45.1
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 5.2e-15 85.5 111 45.0
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.2e-14 84.3 301 29.2
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 3.4e-14 82.8 198 31.3
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 9.8e-14 81.3 177 36.2
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 3.7e-13 79.3 140 40.0
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 3.7e-13 79.3 131 41.2
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.2e-11 74.3 108 48.1
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 3.5e-11 72.8 190 40.5
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 5.0e-10 68.9 96 51.0
CDE02G3549 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 4.7e-08 62.4 130 33.1
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.5e-06 57.4 95 48.4


User provided reference genes

Program Settings