Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p004280 Quercus lobata HOM05D003905 ORTHO05D005329 8.7e-176 620.2 304 100.0
QL02p011991 Quercus lobata HOM05D003905 ORTHO05D005329 6.8e-72 275.0 135 97.8
CiPaw.08G067200 Carya illinoinensis HOM05D003905 ORTHO05D005329 5.3e-48 195.7 139 71.2
Cfa013971 Carpinus fangiana HOM05D003905 ORTHO05D005329 6.5e-46 188.7 136 74.3
Atru.chr13.267 Acer truncatum HOM05D003905 ORTHO05D005329 1.9e-45 187.2 139 70.5
COL.COLO4_26128 Corchorus olitorius HOM05D003905 ORTHO05D005329 7.1e-45 185.3 137 67.2
CiPaw.07G148100 Carya illinoinensis HOM05D003905 ORTHO05D005329 2.7e-44 183.3 139 68.3
FvH4_2g38250 Fragaria vesca HOM05D003905 ORTHO05D005329 6.0e-44 182.2 140 65.0
Ciclev10000122m.g Citrus clementina HOM05D003905 ORTHO05D005329 1.0e-43 181.4 140 67.1
FAN20G1912 Fragaria x ananassa HOM05D003905 ORTHO05D005329 1.3e-43 181.0 140 65.0
RcHm_v2.0_Chr6g0303121 Rosa chinensis HOM05D003905 ORTHO05D005329 2.8e-41 173.3 139 64.7
Duzib093G0852 Durio zibethinus HOM05D003905 ORTHO05D005329 6.2e-41 172.2 135 66.7
Manes.18G012100 Manihot esculenta HOM05D003905 ORTHO05D005329 1.8e-40 170.6 138 65.9
Thecc.08G046500 Theobroma cacao HOM05D003905 ORTHO05D005329 2.4e-40 170.2 137 63.5
Actinidia16997 Actinidia chinensis HOM05D003905 ORTHO05D005329 6.9e-40 168.7 139 62.6
Glyma.17G258900 Glycine max HOM05D003905 ORTHO05D005329 1.2e-39 167.9 140 63.6
MD15G1010900 Malus domestica HOM05D003905 ORTHO05D005329 1.5e-39 167.5 146 61.6
Phvul.009G009400 Phaseolus vulgaris HOM05D003905 ORTHO05D005329 4.5e-39 166.0 140 65.7
Lj5g0002583 Lotus japonicus HOM05D003905 ORTHO05D005329 5.8e-39 165.6 137 63.5
CSS0039596 Camellia sinensis var. sinensis HOM05D003905 ORTHO05D005329 2.9e-38 163.3 139 62.6
Dinv39531 Davidia involucrata HOM05D003905 ORTHO05D005329 3.8e-38 162.9 139 61.9
TAR376G0902 Trochodendron aralioides HOM05D003905 ORTHO05D005329 3.8e-38 162.9 139 61.9
Glyma.04G023600 Glycine max HOM05D003905 ORTHO05D005329 6.5e-38 162.2 139 65.5
Psat6g002200 Pisum sativum HOM05D003905 ORTHO05D005329 6.5e-38 162.2 139 62.6
Glyma.06G023600 Glycine max HOM05D003905 ORTHO05D005329 8.4e-38 161.8 137 66.4
Medtr1g025500 Medicago truncatula HOM05D003905 ORTHO05D005329 1.1e-37 161.4 140 63.6
VMungo0647G0001 Vigna mungo HOM05D003905 ORTHO05D005329 1.4e-37 161.0 141 64.5
TWI12G0098 Tripterygium wilfordii HOM05D003905 ORTHO05D005329 2.5e-37 160.2 142 60.6
Phvul.001G005400 Phaseolus vulgaris HOM05D003905 ORTHO05D005329 4.2e-37 159.5 140 63.6
Glyma.14G219900 Glycine max HOM05D003905 ORTHO05D005329 5.5e-37 159.1 140 64.3
Manes.05G145700 Manihot esculenta HOM05D003905 ORTHO05D005329 7.2e-37 158.7 139 64.7
TWI36G1438 Tripterygium wilfordii HOM05D003905 ORTHO05D005329 9.3e-37 158.3 137 60.6
Duzib116G0388 Durio zibethinus HOM05D003905 ORTHO05D005329 1.6e-36 157.5 138 63.8
MD08G1010900 Malus domestica HOM05D003905 ORTHO05D005329 1.6e-36 157.5 136 63.2
TPR.G26376 Trifolium pratense HOM05D003905 ORTHO05D005329 1.6e-36 157.5 140 60.7
VMungo1309G0723 Vigna mungo HOM05D003905 ORTHO05D005329 1.6e-36 157.5 140 63.6
Lj5g0020561 Lotus japonicus HOM05D003905 ORTHO05D005329 2.7e-36 156.8 138 61.6
TAR628G1379 Trochodendron aralioides HOM05D003905 ORTHO05D005329 6.1e-36 155.6 138 63.0
Lalb_Chr23g0266101 Lupinus albus HOM05D003905 ORTHO05D005329 7.9e-36 155.2 141 63.8
Prupe.1G363500 Prunus persica HOM05D003905 ORTHO05D005329 7.9e-36 155.2 144 62.5
Potri.002G020000 Populus trichocarpa HOM05D003905 ORTHO05D005329 2.3e-35 153.7 140 62.1
Ca_13435_v3 Cicer arietinum L. HOM05D003905 ORTHO05D005329 5.1e-35 152.5 139 61.2
Lalb_Chr08g0246181 Lupinus albus HOM05D003905 ORTHO05D005329 1.5e-34 151.0 141 61.0
Duzib041G0770 Durio zibethinus HOM05D003905 ORTHO05D005329 5.7e-34 149.1 135 60.7
TWI56G0857 Tripterygium wilfordii HOM05D003905 ORTHO05D005329 1.6e-33 147.5 141 58.9
Sabra02G0016300 Salix brachista HOM05D003905 ORTHO05D005329 2.2e-33 147.1 139 61.2
Lalb_Chr11g0061811 Lupinus albus HOM05D003905 ORTHO05D005329 8.2e-33 145.2 141 61.0
TAR381G0315 Trochodendron aralioides HOM05D003905 ORTHO05D005329 8.2e-33 145.2 139 59.0
TAR381G1218 Trochodendron aralioides HOM05D003905 ORTHO05D005329 1.1e-32 144.8 139 58.3
DCAR_016728 Daucus carota HOM05D003905 ORTHO05D005329 2.4e-32 143.7 140 57.1
Potri.005G241400 Populus trichocarpa HOM05D003905 ORTHO05D005329 3.1e-32 143.3 125 66.4
Lj4C798T8 Lonicera japonica HOM05D003905 ORTHO05D005329 5.3e-32 142.5 138 58.0
Hma1.2p1_0023F.1_g015570 Hydrangea macrophylla HOM05D003905 ORTHO05D005329 6.9e-32 142.1 140 57.1
Cc10_g01500 Coffea canephora HOM05D003905 ORTHO05D005329 9.0e-32 141.7 138 53.6
CANSAT25G2239 Cannabis sativa HOM05D003905 ORTHO05D005329 1.2e-31 141.4 136 55.1
Actinidia15434 Actinidia chinensis HOM05D003905 ORTHO05D005329 1.5e-31 141.0 107 64.5
Dinv31863 Davidia involucrata HOM05D003905 ORTHO05D005329 1.5e-31 141.0 120 61.7
Nitab4.5_0000337g0040 Nicotiana tabacum HOM05D003905 ORTHO05D005329 1.5e-31 141.0 136 55.9
PGSC0003DMG400029336 Solanum tuberosum HOM05D003905 ORTHO05D005329 1.0e-30 138.3 138 53.6
Eucgr.H00969 Eucalyptus grandis HOM05D003905 ORTHO05D005329 1.7e-30 137.5 146 54.1
Gohir.D05G188500 Gossypium hirsutum HOM05D003905 ORTHO05D005329 2.9e-30 136.7 155 52.9
DCAR_013879 Daucus carota HOM05D003905 ORTHO05D005329 6.5e-30 135.6 143 52.4
Solyc12g089320.3 Solanum lycopersicum HOM05D003905 ORTHO05D005329 2.5e-29 133.7 137 52.6
Sopen12g031180 Solanum pennellii HOM05D003905 ORTHO05D005329 3.2e-29 133.3 137 52.6
Gorai.009G193800 Gossypium raimondii HOM05D003905 ORTHO05D005329 1.6e-28 131.0 155 51.0
Sabra05G0186900 Salix brachista HOM05D003905 ORTHO05D005329 2.7e-28 130.2 125 60.0
Nitab4.5_0005970g0010 Nicotiana tabacum HOM05D003905 ORTHO05D005329 1.1e-26 124.8 141 52.5
Peaxi162Scf00553g00071 Petunia axillaris HOM05D003905 ORTHO05D005329 3.3e-26 123.2 139 48.2
MELO3C003744.2 Cucumis melo HOM05D003905 ORTHO05D005329 4.3e-26 122.9 141 56.0
TAR625G1519 Trochodendron aralioides HOM05D003905 ORTHO05D005329 4.3e-26 122.9 137 51.8
ClCG05G018200 Citrullus lanatus HOM05D003905 ORTHO05D005329 1.3e-25 121.3 141 54.6
CsaV3_3G045950 Cucumis sativus L. HOM05D003905 ORTHO05D005329 4.8e-25 119.4 141 56.0
Sc15g0004870 Simmondsia chinensis HOM05D003905 ORTHO05D005329 4.8e-25 119.4 140 47.9
EL10Ac1g02168 Beta vulgaris HOM05D003905 ORTHO05D005329 8.2e-25 118.6 142 50.0
Migut.N03170 Erythranthe guttata HOM05D003905 ORTHO05D005329 1.1e-24 118.2 142 49.3
Nitab4.5_0003251g0050 Nicotiana tabacum HOM05D003905 ORTHO05D005329 1.8e-24 117.5 122 52.5
Rhsim06G0019800 Rhododendron simsii HOM05D003905 ORTHO05D005329 1.8e-24 117.5 138 50.7
AUR62035030 Chenopodium quinoa HOM05D003905 ORTHO05D005329 4.1e-24 116.3 142 47.9
MSTRG.24238 Avicennia marina HOM05D003905 ORTHO05D005329 6.9e-24 115.5 140 51.4
PSO541G2778 Papaver somniferum HOM05D003905 ORTHO05D005329 9.1e-24 115.2 142 50.7
CAN.G1925.3 Capsicum annuum HOM05D003905 ORTHO05D005329 1.5e-23 114.4 138 48.6
PSO675G3234 Papaver somniferum HOM05D003905 ORTHO05D005329 2.0e-23 114.0 142 50.0
Nn5g30748 Nelumbo nucifera HOM05D003905 ORTHO05D005329 4.5e-23 112.8 139 51.8
SalBow7G0836 Salvia bowleyana HOM05D003905 ORTHO05D005329 7.7e-23 112.1 140 46.4
AUR62040550 Chenopodium quinoa HOM05D003905 ORTHO05D005329 1.0e-22 111.7 142 46.5
Gohir.D06G005700 Gossypium hirsutum HOM05D003905 ORTHO05D005329 1.3e-22 111.3 125 52.8
Sed0006884 Sechium edule HOM05D003905 ORTHO05D005329 1.7e-22 110.9 139 51.8
Sed0012955 Sechium edule HOM05D003905 ORTHO05D005329 1.7e-22 110.9 141 52.5
AL7G29080 Arabidopsis lyrata HOM05D003905 ORTHO05D005329 3.8e-22 109.8 141 46.8
Gorai.010G002900 Gossypium raimondii HOM05D003905 ORTHO05D005329 3.8e-22 109.8 125 52.8
MSTRG.22343 Avicennia marina HOM05D003905 ORTHO05D005329 5.0e-22 109.4 146 44.5
MSTRG.25260 Avicennia marina HOM05D003905 ORTHO05D005329 6.5e-22 109.0 138 45.7
Oeu061973.1 Olea europaea HOM05D003905 ORTHO05D005329 6.5e-22 109.0 139 50.4
DCAR_013878 Daucus carota HOM05D003905 ORTHO05D005329 1.9e-21 107.5 135 47.4
Gohir.A06G002700 Gossypium hirsutum HOM05D003905 ORTHO05D005329 2.5e-21 107.1 125 51.2
AT4G24200 Arabidopsis thaliana HOM05D003905 ORTHO05D005329 4.2e-21 106.3 141 46.1
Carub.0007s1689 Capsella rubella HOM05D003905 ORTHO05D005329 9.4e-21 105.1 141 44.7
Oeu054487.1 Olea europaea HOM05D003905 ORTHO05D005329 1.2e-20 104.8 137 49.6
Oeu014169.1 Olea europaea HOM05D003905 ORTHO05D005329 1.0e-19 101.7 139 49.6
PGR083G2535 Punica granatum HOM05D003905 ORTHO05D005329 3.0e-19 100.1 129 45.0
A03p55230 Brassica napus HOM05D003905 ORTHO05D005329 6.7e-19 99.0 138 44.9
BraA03t14582Z Brassica rapa HOM05D003905 ORTHO05D005329 6.7e-19 99.0 138 44.9
CARHR231610 Cardamine hirsuta HOM05D003905 ORTHO05D005329 6.7e-19 99.0 147 49.0
Thhalv10027094m.g Eutrema salsugineum HOM05D003905 ORTHO05D005329 6.7e-19 99.0 126 47.6
Sp7g22170 Schrenkiella parvula HOM05D003905 ORTHO05D005329 8.8e-19 98.6 141 42.6
unitig_22.g6796 Utricularia gibba HOM05D003905 ORTHO05D005329 3.3e-18 96.7 161 42.9
GSVIVG01024041001 Vitis vinifera HOM05D003905 ORTHO05D005329 1.3e-17 94.7 134 42.5
ECA238G1952 Erigeron canadensis HOM05D003905 ORTHO05D005329 2.2e-17 94.0 131 43.5
Aqoxy5G01812 Aquilegia oxysepala HOM05D003905 ORTHO05D005329 2.8e-17 93.6 137 40.9
C07p53430 Brassica napus HOM05D003905 ORTHO05D005329 3.7e-17 93.2 127 43.3
BolC7t45844H Brassica oleracea HOM05D003905 ORTHO05D005329 4.8e-17 92.8 141 40.4
BcaC06g32891 Brassica carinata HOM05D003905 ORTHO05D005329 2.4e-16 90.5 141 39.7
RhsimUnG0065300 Rhododendron simsii HOM05D003905 ORTHO05D005329 3.1e-16 90.1 121 47.9
QL01p054291 Quercus lobata HOM05D009834 ORTHO05D012892 4.1e-16 89.7 72 56.9
QL01p054764 Quercus lobata HOM05D009834 ORTHO05D012892 4.1e-16 89.7 72 56.9
A03p55210 Brassica napus HOM05D003905 ORTHO05D005329 7.0e-16 89.0 147 39.5
BraA03t14580Z Brassica rapa HOM05D003905 ORTHO05D005329 7.0e-16 89.0 147 39.5
C07p53520 Brassica napus HOM05D003905 ORTHO05D005329 9.1e-16 88.6 142 40.8
QL10p003636 Quercus lobata HOM05D009834 ORTHO05D012892 9.1e-16 88.6 72 58.3
QL11p004242 Quercus lobata HOM05D009834 ORTHO05D012892 9.1e-16 88.6 74 54.1
QL93p0348_0001 Quercus lobata HOM05D009834 ORTHO05D012892 9.1e-16 88.6 72 58.3
MBI05_g23390_MAGBIO Magnolia biondii HOM05D003905 ORTHO05D005329 1.2e-15 88.2 146 43.2
Sabra13G0112200 Salix brachista HOM05D003905 ORTHO05D005329 1.2e-15 88.2 73 65.8
HanXRQChr14g0431231 Helianthus annuus HOM05D003905 ORTHO05D005329 1.6e-15 87.8 181 38.7
BolC7t45837H Brassica oleracea HOM05D003905 ORTHO05D005329 2.0e-15 87.4 131 42.0
PSO700G0319 Papaver somniferum HOM05D003905 ORTHO05D005329 2.0e-15 87.4 140 46.4
PSO170G1273 Papaver somniferum HOM05D003905 ORTHO05D005329 3.5e-15 86.7 140 46.4
Migut.C00854 Erythranthe guttata HOM05D003905 ORTHO05D005329 4.5e-15 86.3 142 42.3
unitig_8.g3383 Utricularia gibba HOM05D003905 ORTHO05D005329 7.7e-15 85.5 144 41.7
Lj4C22T7 Lonicera japonica HOM05D003905 ORTHO05D005329 1.7e-14 84.3 133 42.9
QL05p076693 Quercus lobata HOM05D009834 ORTHO05D012892 1.7e-14 84.3 159 35.8
QL01p001433 Quercus lobata HOM05D009834 ORTHO05D012892 2.2e-14 84.0 80 50.0
SGA_v2.0_scaffold390G50586 Striga asiatica HOM05D003905 ORTHO05D005329 2.2e-14 84.0 140 40.0
MBI09_g14157_MAGBIO Magnolia biondii HOM05D003905 ORTHO05D005329 5.0e-14 82.8 154 37.0
ATR0579G136 Amborella trichopoda HOM05D003905 ORTHO05D005329 8.5e-14 82.0 147 43.5
QL10p058830 Quercus lobata HOM05D000150 ORTHO05D000108 1.5e-13 81.3 78 47.4
QL12p022170 Quercus lobata HOM05D009834 ORTHO05D012892 1.9e-13 80.9 73 52.1
QL04p095280 Quercus lobata HOM05D009834 ORTHO05D012892 2.5e-13 80.5 73 52.1
Oeu001044.1 Olea europaea HOM05D003905 ORTHO05D005329 7.2e-13 79.0 136 42.6
Ah.11g039850 Amaranthus hybridus HOM05D003905 ORTHO05D005329 1.2e-12 78.2 132 40.9
QL04p074647 Quercus lobata HOM05D009834 ORTHO05D012892 1.6e-12 77.8 158 34.8
THA.LOC104806874 Tarenaya hassleriana HOM05D003905 ORTHO05D005329 1.6e-12 77.8 140 40.7
QL09p047175 Quercus lobata HOM05D009834 ORTHO05D012892 2.7e-12 77.0 78 46.2
MBI10_g30418_MAGBIO Magnolia biondii HOM05D003905 ORTHO05D011420 4.7e-12 76.3 134 38.8
ECA232G5024 Erigeron canadensis HOM05D003905 ORTHO05D005329 3.0e-11 73.6 173 34.7
Oeu046285.1 Olea europaea HOM05D003905 ORTHO05D005329 4.0e-11 73.2 138 42.8
TAR381G0253 Trochodendron aralioides HOM05D003905 ORTHO05D011420 8.8e-11 72.0 134 37.3
SEGI_23721 Sequoiadendron giganteum HOM05D003905 ORTHO05D005329 2.6e-10 70.5 125 38.4
TAR624G0280 Trochodendron aralioides HOM05D003905 ORTHO05D011420 3.3e-10 70.1 124 38.7
TAR624G1117 Trochodendron aralioides HOM05D003905 ORTHO05D011420 3.3e-10 70.1 124 38.7
QL09p013567 Quercus lobata HOM05D009834 ORTHO05D012892 5.7e-10 69.3 126 38.1
CDE04G0614 Ceratophyllum demersum HOM05D003905 ORTHO05D005329 2.2e-09 67.4 137 40.1
HanXRQChr13g0387191 Helianthus annuus HOM05D003905 ORTHO05D005329 4.8e-09 66.2 133 35.3
Os06g0631300 Oryza sativa ssp. japonica HOM05D003905 ORTHO05D005329 1.2e-07 61.6 170 33.5
Zm00001eb228940 Zea mays HOM05D003905 ORTHO05D005329 1.6e-07 61.2 142 32.4
QL07p028676 Quercus lobata HOM05D009834 ORTHO05D012892 7.7e-07 58.9 29 75.9
QL93p1878_0002 Quercus lobata HOM05D009834 ORTHO05D012892 7.7e-07 58.9 29 75.9
Lsat_1_v5_gn_0_1320 Lactuca sativa HOM05D003905 ORTHO05D005329 1.3e-06 58.2 202 31.7
QL02p080468 Quercus lobata HOM05D000003 ORTHO05D000007 1.3e-06 58.2 97 40.2
QL05p018198 Quercus lobata HOM05D009834 ORTHO05D005329 1.7e-06 57.8 35 74.3
ATR1134G065 Amborella trichopoda HOM05D003905 ORTHO05D005329 3.8e-06 56.6 129 35.7
GSVIVG01034470001 Vitis vinifera HOM05D003905 ORTHO05D011420 3.8e-06 56.6 126 31.7
FvH4_5g32010 Fragaria vesca HOM05D003905 ORTHO05D011420 5.0e-06 56.2 131 34.4
FAN04G1043 Fragaria x ananassa HOM05D003905 ORTHO05D011420 5.0e-06 56.2 131 33.6
FAN18G0158 Fragaria x ananassa HOM05D003905 ORTHO05D011420 5.0e-06 56.2 131 34.4
QL01p024136 Quercus lobata HOM05D009834 ORTHO05D012892 5.0e-06 56.2 74 41.9


User provided reference genes

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