Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 3.5e-161 571.6 303 100.0
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 7.9e-121 437.6 273 79.5
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.1e-119 433.7 282 79.4
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 8.5e-115 417.5 281 73.7
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 1.9e-114 416.4 277 74.0
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 5.5e-114 414.8 283 72.8
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 5.5e-114 414.8 283 72.8
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 1.2e-111 407.1 285 71.2
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 6.3e-110 401.4 279 70.6
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 8.2e-110 401.0 282 71.6
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.8e-109 399.8 274 72.3
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 4.1e-109 398.7 274 71.9
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 2.0e-108 396.4 273 72.5
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 3.5e-108 395.6 273 72.9
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 7.7e-108 394.4 273 71.4
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 1.0e-107 394.0 296 67.9
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 1.7e-107 393.3 275 69.8
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 2.9e-107 392.5 288 69.1
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 6.5e-107 391.3 267 76.8
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.5e-106 390.2 279 69.5
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.9e-106 389.8 276 71.0
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 4.2e-106 388.7 272 72.4
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 5.5e-106 388.3 284 68.3
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 5.5e-106 388.3 283 67.8
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 9.4e-106 387.5 295 72.2
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 2.1e-105 386.3 272 70.6
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 2.7e-105 386.0 274 70.1
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.6e-105 385.6 289 67.5
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 3.6e-105 385.6 279 67.7
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.0e-104 384.0 290 67.2
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 1.8e-104 383.3 279 73.8
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.0e-103 379.8 285 71.9
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 5.7e-103 378.3 285 71.6
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 3.7e-102 375.6 218 79.8
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 4.8e-102 375.2 276 65.6
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 8.3e-102 374.4 325 62.8
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.4e-101 373.6 282 71.3
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 7.0e-101 371.3 295 63.7
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.6e-100 370.2 300 64.0
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 2.0e-100 369.8 271 69.7
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 2.7e-100 369.4 277 68.6
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 7.7e-100 367.9 275 68.0
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 1.7e-99 366.7 218 78.9
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.7e-99 366.7 279 67.4
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 8.6e-99 364.4 272 66.5
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 8.6e-99 364.4 277 65.0
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 3.2e-98 362.5 218 78.9
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 3.2e-98 362.5 281 65.8
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 4.2e-98 362.1 281 67.6
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.6e-97 360.1 283 68.2
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 2.1e-97 359.8 285 66.7
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 2.8e-97 359.4 287 63.4
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 3.6e-97 359.0 283 68.2
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 4.7e-97 358.6 338 56.5
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 6.1e-97 358.2 297 62.3
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 8.0e-97 357.8 278 64.7
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.8e-96 356.7 218 78.4
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 2.3e-96 356.3 281 64.4
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 6.8e-96 354.8 299 61.2
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 8.8e-96 354.4 281 65.1
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 8.8e-96 354.4 210 76.7
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 1.5e-95 353.6 257 68.9
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 9.8e-95 350.9 342 55.0
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 2.8e-94 349.4 283 62.9
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.7e-94 349.0 309 62.5
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 6.3e-94 348.2 220 74.5
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 1.1e-93 347.4 190 82.6
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 1.1e-93 347.4 190 82.6
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 3.5e-92 342.4 309 57.6
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 4.5e-92 342.0 211 74.9
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 4.5e-92 342.0 266 65.4
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 7.8e-92 341.3 248 68.1
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 1.7e-91 340.1 273 62.3
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 2.3e-91 339.7 281 60.1
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 5.0e-91 338.6 334 57.2
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 6.6e-91 338.2 221 72.9
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 6.6e-91 338.2 221 72.9
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.5e-90 337.0 338 52.7
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.9e-90 336.7 281 60.5
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.5e-90 336.3 221 72.9
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 7.3e-90 334.7 277 61.4
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.2e-89 334.0 333 57.1
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 2.8e-89 332.8 233 72.1
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 2.8e-89 332.8 289 59.2
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 2.3e-88 329.7 278 58.6
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 2.3e-88 329.7 264 62.9
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 4.0e-88 328.9 273 60.4
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 4.0e-88 328.9 215 73.0
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 4.0e-88 328.9 259 62.9
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.2e-87 327.4 271 61.6
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 2.6e-87 326.2 273 60.8
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 2.6e-87 326.2 269 60.2
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 5.7e-87 325.1 337 52.2
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 2.9e-86 322.8 215 70.7
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 3.7e-86 322.4 214 70.6
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 5.0e-83 312.0 306 55.9
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 5.6e-82 308.5 238 73.5
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 5.6e-82 308.5 279 61.3
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.8e-81 306.2 211 69.7
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 6.2e-81 305.1 271 55.7
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 5.2e-80 302.0 269 57.2
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 5.2e-80 302.0 269 57.2
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 3.4e-79 299.3 269 56.9
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 3.7e-78 295.8 209 66.5
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 3.2e-77 292.7 268 56.3
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 2.0e-76 290.0 265 55.1
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 7.8e-76 288.1 267 55.1
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 3.0e-75 286.2 270 53.7
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 3.0e-75 286.2 270 53.7
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 4.7e-73 278.9 274 51.8
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 4.0e-72 275.8 266 52.6
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 4.4e-71 272.3 159 78.0
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.3e-70 270.8 267 52.8
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 4.9e-70 268.9 161 75.8
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 2.3e-67 260.0 249 55.4
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 3.3e-66 256.1 265 49.4
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.1e-65 253.4 336 42.9
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.3e-59 234.2 220 55.9
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 8.7e-59 231.5 209 52.6
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 8.1e-57 224.9 211 53.1
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 1.9e-53 213.8 138 73.2
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.0e-51 206.5 135 72.6
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.5e-50 203.4 135 73.3
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.2e-46 190.3 114 77.2
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.9e-46 189.9 173 60.1
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 2.4e-45 186.8 264 39.4
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.9e-37 160.6 96 76.0
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 6.2e-33 145.6 262 35.9
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 3.4e-31 139.8 100 66.0
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 4.5e-31 139.4 80 80.0
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 5.3e-24 115.9 112 67.0
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.6e-20 104.4 53 81.1
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 3.9e-19 99.8 109 54.1
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.8e-16 90.9 85 57.6
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.0e-14 85.1 48 81.2
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 2.2e-14 84.0 53 73.6
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 1.1e-13 81.6 55 78.2
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 8.8e-11 72.0 61 55.7
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 4.1e-08 63.2 322 20.8


User provided reference genes

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