Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 2.6e-175 618.6 313 100.0
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.9e-141 506.1 360 75.6
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 5.3e-136 488.0 359 71.6
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.3e-134 483.4 358 71.2
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 7.2e-133 477.6 360 69.7
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 7.2e-133 477.6 364 70.1
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 3.9e-131 471.9 359 68.2
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 2.5e-130 469.2 361 69.0
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 3.7e-129 465.3 356 68.8
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 8.2e-129 464.2 362 67.7
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 8.2e-129 464.2 363 67.2
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 3.1e-128 462.2 363 67.2
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 5.3e-128 461.5 361 68.1
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 1.2e-127 460.3 361 66.8
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.5e-127 459.9 361 66.8
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 2.0e-127 459.5 330 73.0
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 2.0e-127 459.5 332 72.6
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 2.6e-127 459.1 375 65.3
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 5.9e-127 458.0 379 66.2
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 2.9e-126 455.7 361 65.7
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 2.9e-126 455.7 361 67.0
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 5.0e-126 454.9 359 66.9
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 8.5e-126 454.1 358 67.3
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.4e-125 453.4 361 65.9
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 2.5e-125 452.6 359 66.6
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 2.5e-125 452.6 355 69.3
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 7.2e-125 451.1 357 66.1
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 7.2e-125 451.1 357 66.4
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.2e-124 450.3 359 66.3
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 2.1e-124 449.5 355 67.6
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 2.1e-124 449.5 358 67.6
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 4.7e-124 448.4 355 67.6
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 4.7e-124 448.4 354 66.9
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 6.1e-124 448.0 360 66.4
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.0e-123 447.2 359 65.7
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 2.3e-123 446.0 358 66.2
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 3.9e-123 445.3 359 64.3
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 5.1e-123 444.9 357 66.1
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 6.7e-123 444.5 362 65.5
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 8.8e-123 444.1 363 62.8
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 1.5e-122 443.4 359 65.7
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 2.0e-122 443.0 359 65.7
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 3.3e-122 442.2 355 65.9
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 4.4e-122 441.8 359 66.6
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 7.4e-122 441.0 359 65.2
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 7.4e-122 441.0 359 65.2
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 2.2e-121 439.5 329 69.0
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 2.8e-121 439.1 361 64.5
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 8.2e-121 437.6 359 64.9
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 8.2e-121 437.6 354 65.0
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.4e-120 436.8 358 65.1
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 1.8e-120 436.4 357 65.3
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 2.4e-120 436.0 354 65.5
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 5.3e-120 434.9 355 65.1
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 5.9e-119 431.4 383 61.1
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 1.7e-118 429.9 360 63.6
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 2.2e-118 429.5 259 84.6
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 2.2e-118 429.5 362 63.0
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 2.2e-118 429.5 331 68.0
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 5.0e-118 428.3 366 62.6
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 5.0e-118 428.3 353 64.6
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 5.0e-118 428.3 356 64.6
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 2.5e-117 426.0 371 60.6
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 9.4e-117 424.1 345 66.4
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 8.0e-116 421.0 369 61.5
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 1.0e-115 420.6 365 61.4
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 3.0e-115 419.1 362 61.9
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 8.8e-115 417.5 267 80.1
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 2.6e-114 416.0 435 56.6
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.7e-113 413.3 363 62.5
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 1.4e-112 410.2 368 61.1
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 9.1e-112 407.5 260 80.8
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 1.2e-111 407.1 328 63.7
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 2.6e-111 406.0 362 63.0
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 1.1e-109 400.6 280 74.3
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 5.5e-109 398.3 269 78.1
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 6.1e-108 394.8 275 76.0
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 1.0e-107 394.0 364 59.1
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 1.4e-107 393.7 355 61.7
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 1.4e-107 393.7 356 60.4
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 3.3e-106 389.0 262 75.6
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 3.7e-105 385.6 282 71.3
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 8.2e-105 384.4 342 63.5
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 9.1e-104 380.9 353 57.2
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 1.6e-103 380.2 262 74.0
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 3.8e-102 375.6 338 61.8
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 8.5e-102 374.4 357 58.0
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 7.2e-101 371.3 258 73.3
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 2.7e-100 369.4 351 59.5
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 4.7e-100 368.6 301 63.5
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 1.3e-97 360.5 327 59.6
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.0e-95 353.2 346 56.6
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 3.8e-94 349.0 251 70.5
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 8.6e-94 347.8 264 68.2
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 2.1e-92 343.2 356 53.1
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.0e-91 340.9 314 60.2
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.0e-91 340.9 207 83.1
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 2.3e-91 339.7 199 86.4
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 2.0e-90 336.7 347 53.0
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 7.5e-90 334.7 299 60.9
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 1.6e-87 327.0 327 53.2
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.1e-85 320.9 271 64.9
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.2e-82 310.8 237 65.0
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 4.1e-80 302.4 358 45.8
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 3.6e-68 262.7 311 49.8
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 5.2e-67 258.8 186 67.7
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 3.3e-61 239.6 349 41.5
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 5.4e-56 222.2 142 78.2
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 5.6e-53 212.2 341 39.6
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 4.9e-49 199.1 217 50.2
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.3e-46 191.0 148 68.2
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 4.9e-41 172.6 380 32.9
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 1.1e-40 171.4 199 46.2
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.3e-33 147.9 176 51.1
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 8.4e-33 145.2 108 69.4
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 3.3e-29 133.3 186 38.2
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 4.6e-23 112.8 77 76.6
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.0e-22 111.7 137 48.2
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 3.0e-22 110.2 96 61.5
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 1.6e-20 104.4 73 67.1
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 1.6e-20 104.4 73 67.1
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 8.5e-17 92.0 198 34.3
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.7e-15 87.0 116 45.7
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 2.5e-13 80.5 145 38.6
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 8.5e-09 65.5 49 67.3
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.6e-07 61.2 96 35.4
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 6.1e-07 59.3 52 55.8
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 3.0e-06 57.0 179 27.4
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 3.0e-06 57.0 171 29.2
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 5.1e-06 56.2 103 33.0
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 6.7e-06 55.8 120 29.2
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 6.7e-06 55.8 120 28.3
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 8.8e-06 55.5 88 36.4
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 8.8e-06 55.5 88 36.4
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 8.8e-06 55.5 89 34.8


User provided reference genes

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