Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p003984 Quercus lobata HOM05D000044 ORTHO05D337302 2.6e-48 194.9 89 100.0
QL02p013226 Quercus lobata HOM05D000044 ORTHO05D004085 4.0e-12 74.7 51 74.5
QL04p080658 Quercus lobata HOM05D000044 ORTHO05D004085 4.0e-12 74.7 51 74.5
arahy.Tifrunner.gnm1.ann1.UJVA88 Arachis hypogaea HOM05D000044 ORTHO05D004085 2.6e-11 72.0 51 68.6
TWI53G1536 Tripterygium wilfordii HOM05D000044 ORTHO05D004085 3.4e-11 71.6 51 68.6
arahy.Tifrunner.gnm1.ann1.RJ01H2 Arachis hypogaea HOM05D000044 ORTHO05D004085 5.7e-11 70.9 51 66.7
Haze_07822 Corylus avellana HOM05D000039 ORTHO05D004085 1.7e-10 69.3 51 68.6
Lalb_Chr25g0284761 Lupinus albus HOM05D000044 ORTHO05D004085 1.1e-09 66.6 51 64.7
FvH4_3g15230 Fragaria vesca HOM05D000039 ORTHO05D004085 1.8e-09 65.9 51 64.7
FAN16G0885 Fragaria x ananassa HOM05D000039 ORTHO05D004085 1.8e-09 65.9 51 64.7
Potri.007G067200 Populus trichocarpa HOM05D000044 ORTHO05D004085 2.4e-09 65.5 51 62.7
RcHm_v2.0_Chr5g0025671 Rosa chinensis HOM05D000044 ORTHO05D004085 3.1e-09 65.1 51 64.7
Cfa022971 Carpinus fangiana HOM05D000039 ORTHO05D004085 5.4e-09 64.3 48 64.6
FAN21G3494 Fragaria x ananassa HOM05D000044 ORTHO05D004085 7.0e-09 63.9 51 62.7
FAN25G0142 Fragaria x ananassa HOM05D000039 ORTHO05D004085 7.0e-09 63.9 51 62.7
MD05G1224400 Malus domestica HOM05D000039 ORTHO05D004085 7.0e-09 63.9 51 62.7
MD10G1206100 Malus domestica HOM05D000044 ORTHO05D004085 7.0e-09 63.9 51 62.7
CiPaw.12G008200 Carya illinoinensis HOM05D000039 ORTHO05D004085 9.2e-09 63.5 48 64.6
FvH4_3g15220 Fragaria vesca HOM05D000044 ORTHO05D004085 9.2e-09 63.5 51 60.8
FAN16G1038 Fragaria x ananassa HOM05D000044 ORTHO05D004085 9.2e-09 63.5 51 60.8
FAN21G0720 Fragaria x ananassa HOM05D000044 ORTHO05D004085 9.2e-09 63.5 51 60.8
TPR.G7582 Trifolium pratense HOM05D000039 ORTHO05D010697 9.2e-09 63.5 66 47.0
Glyma.15G259500 Glycine max HOM05D000044 ORTHO05D004085 1.2e-08 63.2 51 56.9
RcHm_v2.0_Chr5g0025691 Rosa chinensis HOM05D000044 ORTHO05D010697 1.2e-08 63.2 51 60.8
TAR626G0795 Trochodendron aralioides HOM05D000044 ORTHO05D004085 1.2e-08 63.2 67 52.2
Glyma.08G168000 Glycine max HOM05D000044 ORTHO05D004085 1.6e-08 62.8 51 56.9
FAN11G3908 Fragaria x ananassa HOM05D000039 ORTHO05D004085 2.0e-08 62.4 51 60.8
Prupe.7G035800 Prunus persica HOM05D000044 ORTHO05D004085 2.0e-08 62.4 51 62.7
GSVIVG01010156001 Vitis vinifera HOM05D000044 ORTHO05D004085 2.0e-08 62.4 51 62.7
FAN25G1014 Fragaria x ananassa HOM05D000044 ORTHO05D004085 2.7e-08 62.0 53 54.7
Ciclev10017909m.g Citrus clementina HOM05D000044 ORTHO05D004085 3.5e-08 61.6 51 58.8
RcHm_v2.0_Chr5g0025661 Rosa chinensis HOM05D000044 ORTHO05D004085 3.5e-08 61.6 51 60.8
Dinv08138 Davidia involucrata HOM05D000039 ORTHO05D004085 4.5e-08 61.2 51 60.8
Medtr2g067440 Medicago truncatula HOM05D000044 ORTHO05D004085 4.5e-08 61.2 47 59.6
Phvul.005G059700 Phaseolus vulgaris HOM05D000044 ORTHO05D004085 5.9e-08 60.8 51 54.9
Rhsim06G0241800 Rhododendron simsii HOM05D000044 ORTHO05D004085 5.9e-08 60.8 51 60.8
FAN11G3443 Fragaria x ananassa HOM05D000044 ORTHO05D004085 7.8e-08 60.5 48 60.4
Phvul.005G059500 Phaseolus vulgaris HOM05D000044 ORTHO05D004085 7.8e-08 60.5 51 54.9
VMungo1080G0559 Vigna mungo HOM05D000044 ORTHO05D004085 7.8e-08 60.5 51 54.9
Actinidia07386 Actinidia chinensis HOM05D000044 ORTHO05D004085 1.0e-07 60.1 48 60.4
EL10Ac7g16551 Beta vulgaris HOM05D000044 ORTHO05D004085 1.7e-07 59.3 51 56.9
Cpa.g.sc34.24 Carica papaya HOM05D000039 ORTHO05D004085 1.7e-07 59.3 51 54.9
vmacro11703 Vaccinium macrocarpon HOM05D000044 ORTHO05D004085 1.7e-07 59.3 51 58.8
Eucgr.F01472 Eucalyptus grandis HOM05D000039 ORTHO05D004085 2.3e-07 58.9 51 54.9
Medtr2g077990 Medicago truncatula HOM05D000044 ORTHO05D004085 2.3e-07 58.9 50 58.0
Medtr2g078280 Medicago truncatula HOM05D000044 ORTHO05D004085 2.3e-07 58.9 50 58.0
Medtr2g078610 Medicago truncatula HOM05D000044 ORTHO05D004085 2.3e-07 58.9 50 58.0
Prupe.4G276800 Prunus persica HOM05D000044 ORTHO05D004085 2.9e-07 58.5 50 58.0
Medtr2g067450 Medicago truncatula HOM05D000044 ORTHO05D004085 3.9e-07 58.2 50 54.0
Lj3g0014381 Lotus japonicus HOM05D000044 ORTHO05D004085 5.0e-07 57.8 51 58.8
PGR083G2485 Punica granatum HOM05D000044 ORTHO05D004085 5.0e-07 57.8 51 49.0
TPR.G33832 Trifolium pratense HOM05D000044 ORTHO05D004085 5.0e-07 57.8 47 55.3
CSS0021870 Camellia sinensis var. sinensis HOM05D000039 ORTHO05D004085 6.6e-07 57.4 51 56.9
Cc05_g02980 Coffea canephora HOM05D000044 ORTHO05D004085 6.6e-07 57.4 49 57.1
Ca_03605_v3 Cicer arietinum L. HOM05D000044 ORTHO05D004085 8.6e-07 57.0 50 50.0
Thecc.07G166500 Theobroma cacao HOM05D000044 ORTHO05D004085 1.1e-06 56.6 51 52.9
CANSAT80G1790 Cannabis sativa HOM05D000044 ORTHO05D004085 1.9e-06 55.8 51 54.9
Ca_29951_v3 Cicer arietinum L. HOM05D000044 ORTHO05D004085 3.3e-06 55.1 47 51.1
Nitab4.5_0001315g0260 Nicotiana tabacum HOM05D000044 ORTHO05D004085 5.6e-06 54.3 48 54.2
Nitab4.5_0007758g0060 Nicotiana tabacum HOM05D000039 ORTHO05D004085 5.6e-06 54.3 48 54.2
CAN.G438.11 Capsicum annuum HOM05D000039 ORTHO05D004085 9.5e-06 53.5 48 54.2
Hma1.2p1_0151F.1_g067540 Hydrangea macrophylla HOM05D000039 ORTHO05D004085 9.5e-06 53.5 51 54.9
Hma1.2p1_0637F.1_g193375 Hydrangea macrophylla HOM05D000039 ORTHO05D004085 9.5e-06 53.5 51 54.9
GSVIVG01017084001 Vitis vinifera HOM05D000044 ORTHO05D004085 9.5e-06 53.5 48 58.3


User provided reference genes

Program Settings