Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p003189 Quercus lobata HOM05D007891 ORTHO05D009992 4.4e-30 134.0 71 100.0
Cfa011885 Carpinus fangiana HOM05D007891 ORTHO05D009992 1.4e-15 85.9 49 89.8
COL.COLO4_10847 Corchorus olitorius HOM05D007891 ORTHO05D009992 2.6e-14 81.6 48 87.5
MD06G1124700 Malus domestica HOM05D007891 ORTHO05D009992 3.4e-14 81.3 61 73.8
Manes.01G000186 Manihot esculenta HOM05D007891 ORTHO05D009992 4.4e-14 80.9 57 77.2
MD00G1096700 Malus domestica HOM05D007891 ORTHO05D009992 5.8e-14 80.5 61 72.1
Ciclev10023227m.g Citrus clementina HOM05D007891 ORTHO05D009992 1.3e-13 79.3 48 85.4
Haze_09219 Corylus avellana HOM05D000010 ORTHO05D000063 1.7e-13 79.0 43 90.7
Duzib205G0121 Durio zibethinus HOM05D007891 ORTHO05D009992 2.9e-13 78.2 53 77.4
Prupe.5G135300 Prunus persica HOM05D007891 ORTHO05D009992 2.9e-13 78.2 61 73.8
Thecc.03G215400 Theobroma cacao HOM05D007891 ORTHO05D009992 3.7e-13 77.8 57 75.4
RcHm_v2.0_Chr7g0187861 Rosa chinensis HOM05D007891 ORTHO05D009992 8.3e-13 76.6 48 81.2
Potri.011G149400 Populus trichocarpa HOM05D007891 ORTHO05D009992 1.4e-12 75.9 57 71.9
Gorai.004G128000 Gossypium raimondii HOM05D007891 ORTHO05D009992 1.9e-12 75.5 57 71.9
Gohir.A02G095100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 3.2e-12 74.7 48 81.2
Nn3g18767 Nelumbo nucifera HOM05D007891 ORTHO05D009992 3.2e-12 74.7 52 75.0
CANSAT21G1412 Cannabis sativa HOM05D007891 ORTHO05D009992 4.1e-12 74.3 47 83.0
Gohir.D03G088400 Gossypium hirsutum HOM05D007891 ORTHO05D009992 4.1e-12 74.3 48 81.2
Gorai.003G073400 Gossypium raimondii HOM05D007891 ORTHO05D009992 4.1e-12 74.3 48 81.2
PGR042G1189 Punica granatum HOM05D007891 ORTHO05D009992 4.1e-12 74.3 57 71.9
ATR0579G034 Amborella trichopoda HOM05D007891 ORTHO05D009992 7.1e-12 73.6 50 76.0
Gohir.D08G121300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 9.2e-12 73.2 57 70.2
TWI15G0344 Tripterygium wilfordii HOM05D007891 ORTHO05D009992 9.2e-12 73.2 57 71.9
Zm00001eb250770 Zea mays HOM05D007891 ORTHO05D009992 9.2e-12 73.2 52 71.2
Migut.A01060 Erythranthe guttata HOM05D007891 ORTHO05D009992 1.2e-11 72.8 54 72.2
Gohir.A08G108600 Gossypium hirsutum HOM05D007891 ORTHO05D009992 2.1e-11 72.0 57 68.4
Phvul.006G173900 Phaseolus vulgaris HOM05D007891 ORTHO05D009992 4.6e-11 70.9 57 68.4
Os04g0581700 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 1.0e-10 69.7 49 71.4
PSO063G6751 Papaver somniferum HOM05D007891 ORTHO05D009992 1.0e-10 69.7 58 63.8
Gohir.A09G187300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.3e-10 69.3 50 76.0
Nn1g05266 Nelumbo nucifera HOM05D007891 ORTHO05D009992 1.3e-10 69.3 52 73.1
CSS0018813 Camellia sinensis var. sinensis HOM05D007891 ORTHO05D009992 1.7e-10 68.9 54 66.7
Medtr2g016650 Medicago truncatula HOM05D007891 ORTHO05D009992 2.3e-10 68.6 48 75.0
Ca_00459_v3 Cicer arietinum L. HOM05D007891 ORTHO05D009992 3.9e-10 67.8 47 76.6
TPR.G27295 Trifolium pratense HOM05D007891 ORTHO05D009992 5.1e-10 67.4 58 62.1
Gohir.D09G182100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 6.6e-10 67.0 50 74.0
Gorai.006G204200 Gossypium raimondii HOM05D007891 ORTHO05D009992 6.6e-10 67.0 50 74.0
SalBow6G2331 Salvia bowleyana HOM05D007891 ORTHO05D009992 6.6e-10 67.0 51 68.6
Lj6g0010842 Lotus japonicus HOM05D007891 ORTHO05D009992 1.1e-09 66.2 57 64.9
Zm00001eb072990 Zea mays HOM05D007891 ORTHO05D009992 1.1e-09 66.2 49 69.4
ClCG01G001300 Citrullus lanatus HOM05D007891 ORTHO05D009992 1.9e-09 65.5 51 60.8
Eucgr.L00345 Eucalyptus grandis HOM05D007891 ORTHO05D009992 1.9e-09 65.5 57 59.6
Lalb_Chr20g0117551 Lupinus albus HOM05D007891 ORTHO05D009992 1.9e-09 65.5 48 72.9
Os07g0469200 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 1.9e-09 65.5 62 61.3
arahy.Tifrunner.gnm1.ann1.GMZ6HP Arachis hypogaea HOM05D007891 ORTHO05D009992 3.3e-09 64.7 68 58.8
Carub.0001s3132 Capsella rubella HOM05D007891 ORTHO05D009992 3.3e-09 64.7 55 58.2
CsaV3_5G001430 Cucumis sativus L. HOM05D007891 ORTHO05D009992 4.3e-09 64.3 50 62.0
CiPaw.11G108500 Carya illinoinensis HOM05D007891 ORTHO05D009992 9.5e-09 63.2 40 80.0
A09p33310 Brassica napus HOM05D007891 ORTHO05D009992 1.6e-08 62.4 57 54.4
BraA09t38876Z Brassica rapa HOM05D007891 ORTHO05D009992 1.6e-08 62.4 57 54.4
THA.LOC104806463 Tarenaya hassleriana HOM05D007891 ORTHO05D009992 3.6e-08 61.2 48 64.6
Actinidia22232 Actinidia chinensis HOM05D007891 ORTHO05D009992 6.2e-08 60.5 65 58.5
Sed0006175 Sechium edule HOM05D007891 ORTHO05D009992 6.2e-08 60.5 44 68.2
AT1G33055 Arabidopsis thaliana HOM05D007891 ORTHO05D009992 8.1e-08 60.1 57 56.1
AL1G47370 Arabidopsis lyrata HOM05D007891 ORTHO05D009992 1.8e-07 58.9 57 54.4
C05p32460 Brassica napus HOM05D007891 ORTHO05D009992 2.4e-07 58.5 57 52.6
BolC5t31978H Brassica oleracea HOM05D007891 ORTHO05D009992 2.4e-07 58.5 57 52.6
Thhalv10009221m.g Eutrema salsugineum HOM05D007891 ORTHO05D009992 3.1e-07 58.2 57 50.9
BcaC05g27811 Brassica carinata HOM05D007891 ORTHO05D009992 1.2e-06 56.2 55 50.9
C05p38140 Brassica napus HOM05D007891 ORTHO05D009992 1.2e-06 56.2 55 50.9
Potri.001G452500 Populus trichocarpa HOM05D007891 ORTHO05D009992 1.5e-06 55.8 39 71.8
Zm00001eb096350 Zea mays HOM05D007891 ORTHO05D009992 1.5e-06 55.8 51 64.7
Zm00001eb096380 Zea mays HOM05D007891 ORTHO05D009992 1.5e-06 55.8 51 64.7
Zm00001eb096470 Zea mays HOM05D007891 ORTHO05D009992 1.5e-06 55.8 51 64.7
HPP92_022259 Vanilla planifolia HOM05D007891 ORTHO05D009992 2.0e-06 55.5 47 66.0
BcaB03g13704 Brassica carinata HOM05D007891 ORTHO05D009992 3.4e-06 54.7 57 47.4
A05p24400 Brassica napus HOM05D007891 ORTHO05D009992 3.4e-06 54.7 65 46.2
BraA05t21332Z Brassica rapa HOM05D007891 ORTHO05D009992 3.4e-06 54.7 65 46.2
Zm00001eb096410 Zea mays HOM05D007891 ORTHO05D009992 3.4e-06 54.7 51 62.7
Zm00001eb096420 Zea mays HOM05D007891 ORTHO05D009992 3.4e-06 54.7 51 62.7
BcaB04g17933 Brassica carinata HOM05D007891 ORTHO05D009992 5.8e-06 53.9 45 57.8
C04p42520 Brassica napus HOM05D007891 ORTHO05D009992 7.6e-06 53.5 56 51.8
BolC4t25828H Brassica oleracea HOM05D007891 ORTHO05D009992 9.9e-06 53.1 57 47.4


User provided reference genes

Program Settings