Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 6.2e-248 860.5 492 100.0
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 5.5e-87 325.9 529 45.6
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 2.3e-69 267.3 517 40.4
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.4e-34 151.0 198 42.9
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 1.2e-33 148.7 144 49.3
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 8.6e-32 142.5 202 42.6
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 1.6e-30 138.3 136 51.5
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.6e-30 138.3 202 42.6
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 6.2e-30 136.3 131 50.4
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 3.4e-28 130.6 235 37.4
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 4.4e-28 130.2 155 47.1
Haze_08029 Corylus avellana HOM05D006236 ORTHO05D003486 7.5e-28 129.4 486 31.5
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 4.9e-27 126.7 207 34.3
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 1.4e-26 125.2 111 53.2
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.6e-25 120.2 434 26.0
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.7e-24 118.2 110 50.0
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 5.0e-24 116.7 114 47.4
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 8.6e-24 115.9 181 36.5
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 8.6e-24 115.9 514 26.8
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 7.3e-23 112.8 228 32.9
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 9.5e-23 112.5 136 44.9
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 9.5e-23 112.5 107 51.4
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.6e-22 111.7 483 29.4
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 6.2e-22 109.8 113 47.8
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 6.2e-22 109.8 232 30.6
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 8.1e-22 109.4 188 39.4
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 8.1e-22 109.4 122 45.9
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 6.8e-21 106.3 114 47.4
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 6.8e-21 106.3 213 32.9
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 8.9e-21 105.9 106 48.1
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.2e-20 105.5 218 31.2
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 1.5e-20 105.1 102 48.0
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 3.4e-20 104.0 113 44.2
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 3.4e-20 104.0 434 24.7
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 3.4e-20 104.0 113 44.2
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 3.4e-20 104.0 112 43.8
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 1.3e-19 102.1 108 49.1
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 1.7e-19 101.7 112 45.5
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 1.7e-19 101.7 111 45.0
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 2.2e-19 101.3 109 45.9
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.9e-19 100.9 108 48.1
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 8.3e-19 99.4 118 41.5
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 8.3e-19 99.4 108 48.1
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.1e-18 99.0 88 55.7
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 1.1e-18 99.0 148 38.5
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 1.4e-18 98.6 108 47.2
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.4e-18 98.6 451 24.6
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 1.4e-18 98.6 117 42.7
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 2.4e-18 97.8 107 47.7
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 3.2e-18 97.4 204 34.3
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 5.4e-18 96.7 202 31.7
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 7.1e-18 96.3 182 35.2
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 7.1e-18 96.3 278 27.3
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 9.2e-18 95.9 154 31.8
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 9.2e-18 95.9 154 31.8
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 9.2e-18 95.9 156 31.4
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 1.2e-17 95.5 101 47.5
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.6e-17 95.1 108 45.4
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 2.1e-17 94.7 154 31.2
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 2.1e-17 94.7 114 44.7
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 2.1e-17 94.7 431 23.7
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 2.1e-17 94.7 164 37.8
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 2.7e-17 94.4 157 37.6
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.5e-17 94.0 108 44.4
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 3.5e-17 94.0 109 44.0
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.5e-17 94.0 106 41.5
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.0e-17 93.2 165 37.0
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 7.8e-17 92.8 102 42.2
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 1.0e-16 92.4 110 42.7
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.7e-16 91.7 162 34.6
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.7e-16 91.7 168 35.1
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 3.0e-16 90.9 115 42.6
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 3.9e-16 90.5 113 44.2
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.1e-16 90.1 113 41.6
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 6.6e-16 89.7 437 26.1
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 6.6e-16 89.7 455 24.6
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 6.6e-16 89.7 87 47.1
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 8.6e-16 89.4 188 33.5
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.1e-15 89.0 99 43.4
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 1.1e-15 89.0 200 31.5
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.5e-15 88.6 110 41.8
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.3e-15 87.4 159 36.5
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.3e-15 87.4 105 41.9
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 3.3e-15 87.4 428 23.1
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 5.6e-15 86.7 91 47.3
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 9.5e-15 85.9 230 30.0
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 9.5e-15 85.9 171 34.5
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 9.5e-15 85.9 101 45.5
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.2e-14 85.5 154 29.9
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 1.2e-14 85.5 78 50.0
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 1.6e-14 85.1 116 37.1
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 1.6e-14 85.1 108 39.8
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 2.1e-14 84.7 109 43.1
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 2.8e-14 84.3 488 28.7
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 3.6e-14 84.0 114 41.2
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 4.7e-14 83.6 108 42.6
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 4.7e-14 83.6 106 41.5
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 6.2e-14 83.2 428 23.6
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 8.1e-14 82.8 148 32.4
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.1e-13 82.4 111 40.5
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.4e-13 82.0 117 39.3
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.4e-13 82.0 103 43.7
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.8e-13 81.6 102 45.1
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 2.3e-13 81.3 52 65.4
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 2.3e-13 81.3 110 37.3
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.3e-13 81.3 451 22.8
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 3.1e-13 80.9 173 28.9
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 3.1e-13 80.9 105 42.9
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 4.0e-13 80.5 107 43.0
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 4.0e-13 80.5 88 46.6
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 6.8e-13 79.7 100 40.0
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 6.8e-13 79.7 105 42.9
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 6.8e-13 79.7 105 42.9
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 6.8e-13 79.7 102 42.2
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 6.8e-13 79.7 105 42.9
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 6.8e-13 79.7 114 40.4
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 8.9e-13 79.3 133 32.3
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 8.9e-13 79.3 174 27.0
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 1.5e-12 78.6 132 35.6
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.0e-12 78.2 99 43.4
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 2.0e-12 78.2 120 39.2
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 2.6e-12 77.8 105 41.9
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 2.6e-12 77.8 105 41.9
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.4e-12 77.4 158 33.5
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 4.4e-12 77.0 102 40.2
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 4.4e-12 77.0 102 40.2
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 5.8e-12 76.6 110 36.4
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 7.6e-12 76.3 106 38.7
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 1.3e-11 75.5 102 40.2
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 1.3e-11 75.5 99 39.4
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.3e-11 75.5 143 34.3
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 1.3e-11 75.5 110 36.4
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 1.7e-11 75.1 103 40.8
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 1.7e-11 75.1 102 40.2
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 1.7e-11 75.1 102 39.2
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 1.7e-11 75.1 108 39.8
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 1.7e-11 75.1 106 35.8
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 1.7e-11 75.1 126 34.9
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 2.2e-11 74.7 111 36.0
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 2.2e-11 74.7 111 36.0
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 2.9e-11 74.3 111 39.6
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 2.9e-11 74.3 93 43.0
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 3.7e-11 73.9 124 33.9
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 4.9e-11 73.6 118 34.7
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 4.9e-11 73.6 105 36.2
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 6.4e-11 73.2 118 34.7
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 6.4e-11 73.2 102 39.2
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 8.4e-11 72.8 114 37.7
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 8.4e-11 72.8 87 46.0
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 1.1e-10 72.4 182 26.9
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.4e-10 72.0 102 38.2
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 1.4e-10 72.0 136 35.3
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 1.9e-10 71.6 105 35.2
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 1.9e-10 71.6 105 35.2
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 2.4e-10 71.2 109 38.5
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 2.4e-10 71.2 92 41.3
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 3.2e-10 70.9 102 39.2
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 4.1e-10 70.5 106 35.8
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 5.4e-10 70.1 101 35.6
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 7.1e-10 69.7 106 34.9
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 9.2e-10 69.3 113 35.4
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 1.2e-09 68.9 109 37.6
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 1.2e-09 68.9 108 37.0
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.2e-09 68.9 100 38.0
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.6e-09 68.6 427 23.0
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 2.7e-09 67.8 110 30.0
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 2.7e-09 67.8 110 30.0
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 4.6e-09 67.0 89 44.9
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.0e-09 66.6 432 24.1
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.0e-08 65.9 114 32.5
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 1.0e-08 65.9 101 33.7
ECA246G0424 Erigeron canadensis HOM05D006236 ORTHO05D003486 1.7e-08 65.1 108 34.3
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.7e-08 65.1 90 42.2
Cc10_g13660 Coffea canephora HOM05D006236 ORTHO05D003486 2.3e-08 64.7 81 44.4
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 3.0e-08 64.3 103 36.9
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 3.0e-08 64.3 174 28.7
PSO528G0025 Papaver somniferum HOM05D020877 ORTHO05D003486 8.6e-08 62.8 111 33.3
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 8.6e-08 62.8 104 37.5
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.1e-07 62.4 95 36.8
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.1e-07 62.4 95 36.8
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 1.1e-07 62.4 246 23.6
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 1.5e-07 62.0 161 28.0
unitig_899.g14422 Utricularia gibba HOM05D006236 ORTHO05D003486 1.5e-07 62.0 82 37.8
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 1.9e-07 61.6 182 26.4
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.1e-06 58.2 108 28.7
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.1e-06 58.2 108 28.7


User provided reference genes

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