Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 3.5e-213 745.0 450 100.0
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.9e-182 642.9 451 85.1
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.9e-182 642.9 451 81.6
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 1.7e-103 380.6 466 46.8
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 7.2e-102 375.2 454 48.2
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 1.2e-101 374.4 478 46.9
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 2.7e-101 373.2 459 47.5
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.0e-100 371.3 468 46.6
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.0e-100 371.3 467 46.5
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.8e-100 370.5 444 50.7
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 8.8e-100 368.2 467 48.2
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 7.4e-99 365.2 449 47.2
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 9.7e-99 364.8 455 46.6
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.7e-98 364.0 449 47.0
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 2.2e-98 363.6 453 46.4
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 6.3e-98 362.1 461 47.3
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 8.2e-98 361.7 434 50.5
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 8.2e-98 361.7 467 45.0
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 2.4e-97 360.1 496 47.2
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 2.4e-97 360.1 506 43.5
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 7.0e-97 358.6 449 46.8
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 7.0e-97 358.6 501 45.7
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 7.7e-96 355.1 477 44.0
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.0e-95 354.8 418 50.2
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 1.3e-95 354.4 447 46.5
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 1.7e-95 354.0 447 46.5
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.2e-95 353.6 418 50.2
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 3.8e-95 352.8 438 47.7
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 5.0e-95 352.4 461 47.3
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 5.0e-95 352.4 418 50.0
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 8.5e-95 351.7 443 47.9
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.9e-94 350.5 492 43.3
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 4.2e-94 349.4 456 44.5
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 5.5e-94 349.0 455 52.3
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 7.2e-94 348.6 418 49.8
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.6e-93 347.4 455 45.5
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.1e-93 347.1 470 46.4
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 2.7e-93 346.7 457 47.3
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 4.7e-93 345.9 521 47.0
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 4.7e-93 345.9 521 47.0
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 4.7e-93 345.9 452 43.8
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.0e-92 344.7 492 41.7
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.0e-92 344.7 428 48.8
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.8e-92 344.0 452 46.0
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.8e-92 344.0 445 47.2
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 2.3e-92 343.6 457 45.7
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 4.0e-92 342.8 442 45.9
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 4.0e-92 342.8 451 45.9
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 6.8e-92 342.0 445 44.3
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 6.8e-92 342.0 422 48.3
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 1.2e-91 341.3 469 45.6
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.0e-91 340.5 452 45.6
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.0e-91 340.5 467 45.6
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 2.0e-91 340.5 451 45.9
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 2.6e-91 340.1 429 45.7
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 2.6e-91 340.1 489 43.6
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 3.4e-91 339.7 441 46.7
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 4.4e-91 339.3 433 45.7
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 4.4e-91 339.3 433 45.7
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 5.7e-91 339.0 433 46.0
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 5.7e-91 339.0 464 45.9
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 7.5e-91 338.6 451 44.6
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 9.7e-91 338.2 456 44.5
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.7e-90 337.4 455 43.3
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 2.8e-90 336.7 434 45.9
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 3.7e-90 336.3 460 45.4
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 3.7e-90 336.3 482 43.8
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 8.3e-90 335.1 457 43.5
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.1e-89 334.7 465 46.0
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 1.8e-89 334.0 465 45.8
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 5.3e-89 332.4 499 42.5
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 3.5e-88 329.7 446 43.5
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 4.5e-88 329.3 441 44.4
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 4.5e-88 329.3 444 41.7
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 7.7e-88 328.6 453 42.4
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 1.0e-87 328.2 454 42.3
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 1.0e-87 328.2 442 43.0
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.7e-87 327.4 439 43.5
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 1.5e-86 324.3 486 40.1
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.9e-86 323.9 494 39.7
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.2e-86 322.8 421 47.7
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 5.5e-86 322.4 459 42.7
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 1.6e-85 320.9 452 44.7
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 2.7e-85 320.1 406 46.8
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 4.7e-85 319.3 410 46.6
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 4.7e-85 319.3 333 53.2
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 3.0e-84 316.6 331 55.0
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 4.0e-84 316.2 494 39.7
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 4.0e-84 316.2 456 39.9
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 3.4e-83 313.2 497 42.3
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 1.3e-82 311.2 471 41.6
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.2e-82 310.5 431 42.2
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.4e-81 307.0 426 47.9
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.2e-80 304.7 405 45.9
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.2e-80 304.7 405 45.9
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.6e-80 304.3 434 48.6
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 1.6e-80 304.3 422 47.9
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 2.0e-80 303.9 324 50.0
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 7.7e-80 302.0 462 43.3
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 4.0e-76 289.7 444 40.3
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 2.8e-74 283.5 408 41.9
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 4.1e-73 279.6 410 42.2
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 5.0e-71 272.7 414 42.0
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 4.3e-70 269.6 425 40.9
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 5.6e-70 269.2 414 40.3
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 6.1e-69 265.8 408 40.0
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 6.1e-69 265.8 411 39.7
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 6.8e-68 262.3 297 53.5
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.3e-66 258.1 412 41.0
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 8.3e-66 255.4 520 35.8
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 1.1e-62 245.0 311 48.6
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 1.1e-57 228.4 366 40.7
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 5.4e-57 226.1 330 43.6
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 7.1e-57 225.7 295 45.8
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.2e-56 224.9 380 38.9
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 6.6e-55 219.2 413 34.6
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 1.9e-54 217.6 430 38.8
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.5e-54 217.2 296 41.6
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 2.5e-54 217.2 420 36.2
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 1.2e-51 208.4 419 35.3
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 8.6e-47 192.2 409 32.5
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.6e-37 161.4 232 44.0
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 5.3e-36 156.4 281 37.4
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 4.4e-35 153.3 702 22.8
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.9e-33 147.9 188 46.3
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.0e-31 142.1 278 36.3
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.0e-31 142.1 187 43.3
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 1.9e-30 137.9 355 31.8
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.2e-26 124.4 630 23.3
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 3.8e-26 123.6 191 41.4
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.9e-22 111.3 194 37.1
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 1.4e-20 105.1 157 36.3
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 2.0e-19 101.3 72 62.5
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 2.6e-19 100.9 190 35.3
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 3.4e-19 100.5 197 35.5
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.2e-18 97.8 75 64.0
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 2.9e-18 97.4 458 22.9
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 1.1e-17 95.5 76 59.2
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 1.4e-17 95.1 584 21.9
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.4e-17 95.1 68 61.8
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 3.0e-15 87.4 116 39.7
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 3.9e-15 87.0 400 24.0
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.5e-14 85.1 80 50.0
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 4.3e-14 83.6 74 48.6
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 8.2e-13 79.3 65 53.8
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 9.0e-12 75.9 72 44.4
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 9.0e-12 75.9 194 28.9
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.3e-10 72.0 152 33.6
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 1.7e-10 71.6 192 28.1
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 7.1e-09 66.2 155 33.5
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 4.6e-08 63.5 82 41.5
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 1.0e-07 62.4 78 43.6
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 7.4e-06 56.2 96 36.5
SMO347G0189 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 7.4e-06 56.2 97 34.0
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 9.7e-06 55.8 96 36.5


User provided reference genes

Program Settings