Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 3.8e-137 491.5 245 100.0
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.3e-92 343.6 184 84.8
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.6e-92 343.2 184 87.5
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.6e-92 343.2 184 87.5
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.4e-91 339.3 182 84.1
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.1e-91 339.0 184 86.4
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 5.3e-91 338.2 184 84.2
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.1e-91 337.4 182 83.5
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 9.1e-91 337.4 182 83.5
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 9.1e-91 337.4 184 85.3
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.2e-90 337.0 176 88.1
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.2e-90 337.0 182 87.4
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.5e-90 336.7 180 87.2
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.6e-90 335.9 177 88.1
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 7.7e-90 334.3 175 89.1
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 1.3e-89 333.6 183 84.7
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 3.8e-89 332.0 182 84.1
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 3.8e-89 332.0 175 87.4
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 5.0e-89 331.6 185 82.7
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 6.5e-89 331.3 181 84.0
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 1.4e-88 330.1 183 83.6
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 4.2e-88 328.6 236 67.4
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 9.4e-88 327.4 178 84.3
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 1.2e-87 327.0 180 82.8
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.2e-87 327.0 183 81.4
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.6e-87 326.6 182 81.9
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 2.1e-87 326.2 179 83.8
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 3.6e-87 325.5 184 82.6
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 3.6e-87 325.5 179 84.9
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 6.1e-87 324.7 174 86.8
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 3.0e-86 322.4 179 82.7
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.1e-85 320.5 183 82.0
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.6e-85 319.3 178 83.1
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 5.7e-85 318.2 176 82.4
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 5.7e-85 318.2 184 77.7
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 7.4e-85 317.8 177 80.2
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 9.7e-85 317.4 176 81.2
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.3e-84 317.0 181 82.3
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 2.2e-84 316.2 182 79.7
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.7e-84 315.5 178 81.5
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 3.7e-84 315.5 181 79.6
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.7e-84 315.5 184 76.6
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 4.8e-84 315.1 176 81.2
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 4.8e-84 315.1 180 80.6
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 6.3e-84 314.7 177 81.4
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 6.3e-84 314.7 179 77.7
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 8.2e-84 314.3 177 81.4
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 8.2e-84 314.3 183 76.5
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.1e-83 313.9 176 83.0
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.4e-83 313.5 176 79.5
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 1.4e-83 313.5 180 77.8
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.4e-83 312.8 178 79.8
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 2.4e-83 312.8 176 79.5
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 5.3e-83 311.6 182 79.7
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 5.3e-83 311.6 176 82.4
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 6.9e-83 311.2 177 79.7
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 6.9e-83 311.2 177 79.7
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.2e-82 310.5 173 83.2
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 2.0e-82 309.7 175 80.0
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.6e-82 309.3 179 79.9
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 2.6e-82 309.3 179 79.9
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 3.4e-82 308.9 176 82.4
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 4.5e-82 308.5 176 79.5
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 4.5e-82 308.5 175 80.0
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 4.5e-82 308.5 175 80.0
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 5.9e-82 308.1 180 78.3
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 5.9e-82 308.1 181 76.8
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 7.7e-82 307.8 181 77.9
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 1.0e-81 307.4 177 78.5
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.7e-81 306.6 180 78.3
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 2.2e-81 306.2 177 80.2
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 2.2e-81 306.2 181 77.9
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 3.8e-81 305.4 178 80.3
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 5.0e-81 305.1 180 77.2
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 8.5e-81 304.3 278 58.3
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 8.5e-81 304.3 169 81.1
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 1.1e-80 303.9 176 78.4
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 1.1e-80 303.9 173 80.9
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 4.2e-80 302.0 172 78.5
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 5.5e-80 301.6 177 78.0
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 7.2e-80 301.2 180 77.8
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 9.4e-80 300.8 171 83.0
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 9.4e-80 300.8 183 74.3
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.2e-79 300.4 172 80.2
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.2e-79 300.4 177 77.4
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 2.7e-79 299.3 172 77.3
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 3.6e-79 298.9 178 76.4
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 3.6e-79 298.9 172 79.1
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 4.7e-79 298.5 186 74.7
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 4.7e-79 298.5 176 77.3
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 7.9e-79 297.7 175 78.9
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 1.0e-78 297.4 181 75.1
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.0e-78 297.4 181 75.7
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.8e-78 296.6 180 75.6
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.8e-78 296.6 180 75.6
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 2.3e-78 296.2 179 76.0
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 3.9e-78 295.4 180 74.4
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 3.9e-78 295.4 180 74.4
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 6.7e-78 294.7 181 72.4
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 8.8e-78 294.3 180 75.0
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 8.8e-78 294.3 180 75.0
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 2.0e-77 293.1 172 77.3
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 4.4e-77 292.0 174 77.0
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.8e-76 289.3 178 75.8
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 6.3e-76 288.1 170 76.5
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.4e-75 287.0 149 88.6
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.8e-75 286.6 176 72.7
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 1.8e-75 286.6 247 61.1
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.1e-75 285.4 172 75.6
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.1e-75 285.4 172 75.6
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 1.2e-74 283.9 172 73.3
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 2.0e-74 283.1 175 78.3
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 3.5e-74 282.3 170 74.7
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 2.2e-73 279.6 179 72.6
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 2.2e-73 279.6 173 71.7
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 2.5e-72 276.2 146 87.0
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 1.2e-71 273.9 174 73.6
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 1.6e-71 273.5 170 74.1
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 2.7e-71 272.7 176 70.5
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 2.7e-71 272.7 146 86.3
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 1.4e-70 270.4 148 85.1
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 3.3e-69 265.8 169 71.6
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.5e-69 264.6 184 66.3
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 2.2e-68 263.1 177 70.6
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 4.1e-67 258.8 140 85.0
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.2e-66 257.3 177 67.8
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.6e-63 246.9 138 79.7
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 2.7e-63 246.1 141 77.3
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 6.1e-63 245.0 195 67.2
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 4.4e-61 238.8 138 76.1
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 6.3e-60 235.0 183 63.9
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 2.7e-58 229.6 170 60.6
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 3.5e-58 229.2 182 63.2
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.5e-58 229.2 158 70.3
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.9e-56 223.4 154 69.5
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.9e-56 223.4 144 68.8
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 4.2e-56 222.2 164 64.0
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 5.5e-56 221.9 164 62.2
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 1.5e-53 213.8 111 87.4
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 7.5e-53 211.5 168 56.0
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 6.3e-52 208.4 166 57.8
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 9.2e-51 204.5 168 57.1
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 4.7e-47 192.2 173 57.8
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 6.1e-47 191.8 178 54.5
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 6.2e-39 165.2 143 58.7
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 7.0e-35 151.8 143 55.9
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 9.2e-35 151.4 91 74.7
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 3.9e-33 146.0 84 78.6
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.5e-32 143.3 95 68.4
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 4.7e-31 139.0 98 67.3
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 7.5e-29 131.7 71 84.5
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.2e-28 130.2 82 67.1
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 5.4e-27 125.6 213 32.9
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.3e-25 120.2 71 76.1
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 5.6e-24 115.5 78 70.5
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 8.9e-22 108.2 137 40.1
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.2e-20 103.6 67 70.1
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.2e-20 103.6 63 74.6
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 9.2e-19 98.2 84 57.1
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 1.1e-14 84.7 46 82.6
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.8e-14 84.0 47 76.6
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 9.9e-13 78.2 39 84.6
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 4.9e-12 75.9 47 70.2
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.4e-12 75.1 46 71.7
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.7e-09 65.1 43 67.4
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 4.8e-07 59.3 36 69.4
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 5.3e-06 55.8 36 69.4
arahy.Tifrunner.gnm1.ann1.T252JQ Arachis hypogaea HOM05D004168 ORTHO05D004999 6.9e-06 55.5 40 62.5


User provided reference genes

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