Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 1.2e-109 399.8 196 100.0
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 1.5e-83 313.2 197 78.7
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 4.0e-81 305.1 202 76.2
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 7.8e-77 290.8 183 78.1
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 8.6e-76 287.3 213 71.8
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 8.0e-74 280.8 198 74.2
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 8.0e-74 280.8 198 74.2
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 1.3e-68 263.5 204 68.1
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 8.6e-68 260.8 196 66.3
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.5e-67 260.0 201 68.7
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 9.5e-67 257.3 204 66.7
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 3.6e-66 255.4 200 66.0
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 3.6e-66 255.4 197 65.0
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 4.7e-66 255.0 204 65.7
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 4.7e-66 255.0 199 64.8
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 6.2e-66 254.6 201 66.2
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.8e-65 253.1 200 65.5
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 3.4e-64 248.8 202 64.9
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 4.4e-64 248.4 197 66.0
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.8e-64 248.1 200 65.0
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 7.5e-64 247.7 198 65.2
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.5e-64 247.7 200 65.0
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 9.9e-64 247.3 200 63.5
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.3e-63 246.9 200 64.5
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.9e-63 245.7 200 64.5
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.7e-63 245.4 200 64.0
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.9e-62 243.0 203 63.5
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 1.9e-62 243.0 198 62.6
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.4e-62 242.7 200 63.0
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 3.2e-62 242.3 202 64.4
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.1e-62 241.9 200 63.5
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 7.1e-62 241.1 207 62.8
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 9.2e-62 240.7 200 62.5
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.2e-61 240.4 203 64.5
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.6e-61 240.0 158 76.6
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.6e-61 240.0 200 63.0
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 3.5e-61 238.8 200 62.0
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 4.6e-61 238.4 153 80.4
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 7.8e-61 237.7 200 62.0
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 3.0e-60 235.7 205 63.4
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 8.6e-60 234.2 200 63.5
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 9.5e-59 230.7 200 64.5
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.2e-58 230.3 200 60.0
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.2e-58 230.3 199 61.3
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.6e-58 229.9 202 61.9
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 1.6e-58 229.9 199 62.3
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.8e-58 229.2 202 60.9
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 3.6e-58 228.8 200 60.0
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 8.1e-58 227.6 201 64.2
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 1.4e-57 226.9 195 60.5
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 2.4e-57 226.1 216 59.3
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 4.0e-57 225.3 200 61.0
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 4.0e-57 225.3 197 58.9
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 6.8e-57 224.6 199 63.3
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 2.6e-56 222.6 199 61.3
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.6e-56 222.6 200 57.5
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 4.4e-56 221.9 199 60.3
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 4.4e-56 221.9 199 60.3
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 5.8e-56 221.5 212 55.7
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.3e-55 220.3 199 60.8
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 2.9e-55 219.2 199 60.8
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 2.9e-55 219.2 199 60.8
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 2.9e-55 219.2 202 57.4
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 4.9e-55 218.4 203 58.1
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 6.4e-55 218.0 198 60.1
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 1.4e-54 216.9 205 59.0
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.4e-54 216.9 200 59.0
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 1.4e-54 216.9 200 59.5
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 2.4e-54 216.1 203 58.1
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.4e-54 216.1 196 58.7
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.4e-54 216.1 201 56.7
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 3.2e-54 215.7 201 59.7
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 3.2e-54 215.7 196 58.2
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 5.4e-54 214.9 198 62.6
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 5.4e-54 214.9 200 56.0
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.1e-53 213.0 201 56.2
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 6.0e-53 211.5 204 56.4
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 7.8e-53 211.1 199 57.8
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.0e-52 210.7 197 54.3
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 1.3e-52 210.3 201 58.2
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 1.1e-51 207.2 200 58.5
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 1.1e-51 207.2 200 58.5
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 1.5e-51 206.8 199 57.3
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.9e-51 206.5 200 55.5
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 5.6e-51 204.9 200 56.5
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 5.6e-51 204.9 200 56.5
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.2e-50 203.8 201 54.7
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 2.1e-50 203.0 327 41.3
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 2.8e-50 202.6 200 55.5
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 2.8e-50 202.6 210 51.9
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 3.6e-50 202.2 200 56.0
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 3.6e-50 202.2 261 47.1
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 6.2e-50 201.4 198 56.1
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 8.1e-50 201.1 193 56.5
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 8.1e-50 201.1 270 45.9
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 1.1e-49 200.7 201 56.7
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 1.8e-49 199.9 196 53.1
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 1.8e-49 199.9 196 53.1
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 1.8e-49 199.9 196 53.1
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 4.0e-49 198.7 203 55.7
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 4.0e-49 198.7 209 53.6
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 6.9e-49 198.0 200 54.0
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 9.0e-49 197.6 197 53.8
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 9.0e-49 197.6 199 55.8
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.2e-48 197.2 203 54.7
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 3.4e-48 195.7 201 53.7
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 4.4e-48 195.3 197 51.8
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 1.3e-47 193.7 198 52.5
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.3e-47 193.7 197 55.3
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 1.7e-47 193.4 199 54.3
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 1.7e-47 193.4 199 54.3
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.7e-47 193.4 197 52.8
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 1.7e-47 193.4 197 53.8
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 1.7e-47 193.4 197 53.8
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.2e-47 193.0 199 56.3
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 8.4e-47 191.0 199 51.8
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.9e-46 189.9 203 55.2
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.2e-46 189.1 198 55.1
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 4.2e-46 188.7 198 51.5
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 5.4e-46 188.3 203 52.7
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.6e-45 186.8 202 55.4
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 3.5e-45 185.7 202 52.5
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 1.0e-44 184.1 198 53.0
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 1.7e-44 183.3 196 51.5
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.7e-44 183.3 200 50.0
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 4.3e-43 178.7 205 49.8
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 5.6e-43 178.3 224 48.7
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.1e-42 176.4 119 73.9
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 8.1e-42 174.5 201 52.2
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 1.1e-41 174.1 201 50.2
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 2.0e-40 169.9 198 47.5
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 2.6e-40 169.5 199 49.2
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 4.5e-40 168.7 180 49.4
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 5.8e-40 168.3 201 47.3
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.9e-39 166.0 191 52.4
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 4.9e-39 165.2 194 47.9
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.1e-38 164.1 95 84.2
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 9.3e-38 161.0 201 47.8
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 4.6e-37 158.7 197 48.7
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 6.0e-37 158.3 198 44.9
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 8.1e-34 147.9 155 52.3
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 1.1e-33 147.5 96 70.8
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 9.9e-32 141.0 201 42.3
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 6.4e-31 138.3 156 53.8
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.4e-30 137.1 129 55.0
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.9e-30 136.7 168 48.8
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 4.2e-30 135.6 90 67.8
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 6.0e-29 131.7 168 45.8
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 1.3e-28 130.6 147 49.7
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 6.7e-28 128.3 153 48.4
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 5.6e-27 125.2 137 49.6
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 7.4e-27 124.8 154 51.3
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 9.6e-27 124.4 139 52.5
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 2.8e-26 122.9 129 52.7
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 1.1e-25 120.9 165 43.6
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 9.0e-25 117.9 160 49.4
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 1.2e-24 117.5 88 69.3
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 1.5e-19 100.5 161 42.9
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 4.3e-19 99.0 123 50.4
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 8.2e-18 94.7 73 65.8
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 3.1e-17 92.8 195 37.4
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 5.0e-15 85.5 139 38.8
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 7.2e-14 81.6 44 86.4
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 9.4e-14 81.3 54 74.1
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 7.9e-13 78.2 44 79.5
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 7.9e-13 78.2 44 79.5
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 5.1e-12 75.5 52 63.5
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 4.8e-10 68.9 102 42.2
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 4.8e-10 68.9 102 42.2
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 6.3e-10 68.6 105 38.1
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 2.4e-09 66.6 121 38.0
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 6.9e-09 65.1 102 41.2
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 6.9e-09 65.1 102 41.2
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 1.3e-07 60.8 79 43.0
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 1.7e-07 60.5 116 35.3


User provided reference genes

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