Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 0.0e+00 1429.1 752 100.0
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 4.6e-226 788.5 757 61.0
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 5.4e-211 738.4 769 58.9
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 2.9e-172 609.8 787 50.1
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 1.5e-165 587.4 779 47.5
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 1.2e-162 577.8 794 47.0
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 1.4e-161 574.3 783 48.4
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 3.1e-158 563.1 790 46.1
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 2.0e-152 543.9 773 45.1
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 1.4e-150 537.7 786 48.3
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 2.4e-150 537.0 784 44.6
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 1.5e-149 534.3 769 45.6
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 1.9e-147 527.3 786 46.1
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 2.3e-145 520.4 787 47.0
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 1.5e-144 517.7 725 46.9
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 2.0e-144 517.3 801 42.8
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 2.6e-144 516.9 801 42.9
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 1.2e-138 498.0 786 43.4
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 3.6e-138 496.5 795 43.3
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 1.8e-137 494.2 782 45.4
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 3.3e-136 490.0 799 43.3
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 3.3e-136 490.0 777 42.1
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 4.1e-134 483.0 791 43.1
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.6e-133 481.1 795 41.0
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 1.0e-132 478.4 795 41.0
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 1.3e-132 478.0 776 41.9
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 1.5e-131 474.6 729 45.8
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 3.6e-130 469.9 773 44.2
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 1.8e-129 467.6 936 38.5
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 8.8e-129 465.3 784 41.2
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 3.4e-128 463.4 779 42.6
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 4.4e-128 463.0 902 39.1
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 9.8e-128 461.8 772 41.2
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 3.5e-125 453.4 615 48.5
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 4.5e-125 453.0 797 40.7
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 1.8e-121 441.0 727 42.5
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 2.3e-121 440.7 700 42.9
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 4.0e-121 439.9 811 42.0
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 3.4e-120 436.8 776 39.7
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 3.5e-117 426.8 795 41.8
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 3.5e-117 426.8 795 41.8
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 5.0e-116 422.9 717 41.3
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 2.5e-115 420.6 763 41.8
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 1.4e-113 414.8 774 41.1
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 3.1e-113 413.7 854 39.0
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 1.1e-110 405.2 786 37.9
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 9.2e-110 402.1 769 38.2
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 3.0e-108 397.1 764 39.5
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 1.4e-105 388.3 773 39.7
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 3.1e-105 387.1 789 37.5
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 5.2e-105 386.3 584 41.6
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 6.4e-103 379.4 789 36.2
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 4.1e-102 376.7 755 38.5
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 5.4e-102 376.3 787 36.5
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 1.2e-101 375.2 710 38.6
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 2.1e-101 374.4 793 38.0
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 1.6e-98 364.8 776 36.1
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 4.7e-98 363.2 725 37.7
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 4.0e-97 360.1 331 62.8
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 2.9e-95 354.0 791 35.9
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 2.9e-95 354.0 788 35.7
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 4.9e-95 353.2 843 34.3
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 4.9e-95 353.2 724 36.2
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 6.4e-95 352.8 686 38.0
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 1.1e-94 352.1 806 35.7
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 7.1e-94 349.4 730 37.5
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 6.0e-93 346.3 850 33.8
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 1.0e-92 345.5 797 34.8
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 2.3e-92 344.4 349 55.9
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 3.0e-92 344.0 783 35.2
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 5.1e-92 343.2 720 36.7
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 5.1e-92 343.2 720 36.7
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 5.1e-92 343.2 720 36.7
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 2.8e-90 337.4 768 36.2
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 6.2e-90 336.3 818 35.0
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 5.8e-88 329.7 660 38.0
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 5.4e-86 323.2 798 34.1
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 2.7e-85 320.9 714 35.9
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 3.5e-85 320.5 726 34.6
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 1.1e-83 315.5 722 33.5
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 7.3e-83 312.8 547 38.4
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 2.2e-79 301.2 807 34.8
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 1.7e-76 291.6 716 34.4
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 1.6e-74 285.0 571 36.3
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 1.1e-67 262.3 710 32.5
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 4.0e-65 253.8 279 51.3
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 4.9e-63 246.9 471 39.7
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 1.6e-61 241.9 760 29.7
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 2.3e-60 238.0 274 48.9
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 1.1e-57 229.2 227 56.4
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 2.2e-55 221.5 163 76.7
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 2.4e-49 201.4 437 37.3
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 3.7e-42 177.6 262 43.9
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 8.2e-42 176.4 359 36.5
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 3.1e-41 174.5 385 40.5
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 5.3e-41 173.7 279 38.4
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 3.6e-37 161.0 622 28.0
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 3.6e-37 161.0 726 26.6
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 9.7e-35 152.9 299 43.1
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 1.3e-34 152.5 578 27.2
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 2.2e-34 151.8 345 36.2
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 9.4e-30 136.3 151 58.3
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 4.4e-27 127.5 134 57.5
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 1.3e-26 125.9 155 49.0
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 2.6e-24 118.2 164 49.4
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 1.6e-21 109.0 334 28.7
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 3.7e-18 97.8 342 28.9
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 4.1e-17 94.4 118 45.8
Hma1.2p1_1460F.1_g284990 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 1.3e-15 89.4 166 45.8
Hma1.2p1_1819F.1_g304030 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 1.7e-15 89.0 90 51.1
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 6.5e-15 87.0 638 22.4
Mapoly0016s0037 Marchantia polymorpha HOM05D006140 ORTHO05D007834 7.5e-11 73.6 486 22.4
AagrBONN_evm.TU.Sc2ySwM_344.4141 Anthoceros agrestis HOM05D006140 ORTHO05D007834 1.6e-08 65.9 179 27.4
Medtr5g019630 Medicago truncatula HOM05D006140 ORTHO05D007834 5.9e-08 63.9 106 41.5
Oeu063929.1 Olea europaea HOM05D006140 ORTHO05D007834 1.0e-07 63.2 54 59.3
unitig_32.g10972 Utricularia gibba HOM05D006140 ORTHO05D007834 2.3e-07 62.0 138 36.2
TAR629G2830 Trochodendron aralioides HOM05D006140 ORTHO05D007834 2.9e-07 61.6 190 33.2
Os02g0128300 Oryza sativa ssp. japonica HOM05D006140 ORTHO05D007834 3.8e-07 61.2 168 25.6
SMO367G0412 Selaginella moellendorffii HOM05D006140 ORTHO05D007834 1.5e-06 59.3 272 21.3


User provided reference genes

Program Settings