Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 5.8e-172 607.4 302 100.0
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 2.2e-139 499.2 289 86.2
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.5e-138 495.7 286 86.0
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 3.5e-137 491.9 282 83.7
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 2.3e-136 489.2 282 84.4
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 3.0e-136 488.8 283 83.0
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 3.9e-136 488.4 280 84.6
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 5.1e-136 488.0 282 84.0
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.1e-135 486.9 281 84.7
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 3.3e-135 485.3 281 83.6
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 7.4e-135 484.2 280 84.3
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.3e-134 483.4 280 82.5
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 2.8e-134 482.3 296 80.4
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 2.8e-134 482.3 280 83.9
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 4.8e-134 481.5 284 82.7
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 8.2e-134 480.7 282 83.0
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 1.8e-133 479.6 281 80.8
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 1.8e-133 479.6 280 83.6
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 3.1e-133 478.8 286 82.5
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 3.1e-133 478.8 283 82.7
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 4.1e-133 478.4 280 82.9
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 9.0e-133 477.2 287 79.4
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 2.6e-132 475.7 282 82.6
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 4.5e-132 474.9 282 82.3
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 4.5e-132 474.9 297 80.1
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 2.9e-131 472.2 286 81.5
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.9e-131 472.2 280 81.8
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 8.4e-131 470.7 280 81.4
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 1.1e-130 470.3 281 79.0
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.4e-130 469.9 282 81.2
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 1.9e-130 469.5 282 79.8
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 5.5e-130 468.0 278 81.7
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 2.1e-129 466.1 281 79.4
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 2.1e-129 466.1 282 80.1
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 3.5e-129 465.3 313 74.4
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.0e-128 463.8 282 79.1
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 1.3e-128 463.4 283 79.2
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 8.7e-128 460.7 293 76.5
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 1.1e-127 460.3 280 79.3
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 1.5e-127 459.9 281 77.6
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 2.5e-127 459.1 281 76.9
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 7.4e-127 457.6 273 82.1
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 9.7e-127 457.2 286 78.3
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 9.7e-127 457.2 282 77.7
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 4.8e-126 454.9 280 78.6
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.5e-124 449.9 289 74.0
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 2.0e-124 449.5 280 76.4
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 3.4e-124 448.7 279 77.4
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 1.3e-123 446.8 286 76.2
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 1.7e-123 446.4 275 78.9
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.2e-123 446.0 284 80.6
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 6.5e-123 444.5 288 73.6
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 6.5e-123 444.5 280 76.4
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.1e-122 443.7 275 78.5
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 1.9e-122 443.0 281 75.8
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 1.9e-122 443.0 281 76.2
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 2.5e-122 442.6 282 75.2
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 3.2e-122 442.2 278 77.0
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 4.2e-122 441.8 281 78.3
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 5.5e-122 441.4 280 75.0
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 1.2e-121 440.3 286 76.6
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 7.9e-121 437.6 301 71.1
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 7.9e-121 437.6 278 74.5
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.8e-120 436.4 280 73.9
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 1.8e-120 436.4 279 73.5
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 3.0e-120 435.6 263 79.5
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 5.1e-120 434.9 296 71.3
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 6.7e-120 434.5 282 73.4
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 1.1e-119 433.7 301 70.8
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 2.0e-119 433.0 277 75.5
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 3.3e-119 432.2 288 72.6
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.3e-118 430.3 284 72.9
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 9.1e-117 424.1 280 73.2
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 1.7e-115 419.9 283 73.9
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 2.9e-115 419.1 281 72.6
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 4.2e-114 415.2 245 80.0
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 2.1e-113 412.9 280 70.7
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 7.9e-113 411.0 295 69.8
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 3.9e-112 408.7 283 70.3
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 4.1e-109 398.7 273 74.7
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 3.5e-108 395.6 248 77.8
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 5.0e-107 391.7 285 66.7
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 9.7e-103 377.5 279 65.6
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 1.3e-102 377.1 484 45.5
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 5.0e-99 365.2 281 68.3
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 1.1e-98 364.0 238 75.2
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 7.2e-98 361.3 224 76.3
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 2.7e-97 359.4 224 75.4
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 4.0e-96 355.5 204 81.4
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 2.6e-95 352.8 229 76.4
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 1.7e-94 350.1 195 82.6
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 2.8e-94 349.4 280 64.3
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 6.3e-94 348.2 226 73.5
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.4e-93 347.1 231 72.7
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.8e-93 346.7 231 72.7
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 1.3e-91 340.5 189 85.7
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.5e-90 337.0 187 84.0
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 1.5e-87 327.0 233 69.5
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 4.4e-87 325.5 319 56.7
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 1.3e-86 323.9 249 68.3
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 4.9e-86 322.0 279 55.6
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 2.4e-85 319.7 256 67.2
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 5.4e-85 318.5 186 83.9
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 3.5e-84 315.8 282 58.5
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 5.9e-84 315.1 264 60.2
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 4.9e-78 295.4 231 65.8
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 5.4e-77 292.0 294 54.1
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 3.3e-74 282.7 221 67.0
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.3e-72 276.6 172 77.3
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.3e-72 276.6 172 77.3
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 5.2e-72 275.4 218 60.1
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 9.8e-71 271.2 247 58.3
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.3e-70 270.8 163 78.5
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.7e-70 270.4 152 82.9
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 2.3e-67 260.0 281 52.0
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 9.8e-63 244.6 293 44.7
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.3e-51 207.6 235 49.4
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 1.5e-50 204.1 187 54.5
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 4.3e-50 202.6 163 66.9
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 3.5e-44 183.0 95 89.5
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 4.2e-37 159.5 105 76.2
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 3.4e-31 139.8 207 37.2
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 4.5e-31 139.4 112 63.4
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.3e-19 100.5 66 80.3
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 3.0e-19 100.1 64 81.2
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 5.7e-18 95.9 70 71.4
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 2.2e-14 84.0 77 54.5
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 5.0e-14 82.8 48 72.9
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.2e-13 80.1 45 77.8
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 1.1e-10 71.6 35 80.0
Eucgr.L00581 Eucalyptus grandis HOM05D005203 ORTHO05D192196 3.8e-06 56.6 77 46.8


User provided reference genes

Program Settings